Wall clock time and date at job start Tue Mar 31 2020 18:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48498 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47336 * 300.00730 * 3 2 1 6 6 H 1.48506 * 109.46834 * 60.00354 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00363 * 197.36691 * 7 2 1 9 9 N 1.36937 * 119.99953 * 17.35896 * 7 2 1 10 10 C 1.46935 * 120.62866 * 27.67595 * 9 7 2 11 11 C 1.53197 * 108.77543 * 126.41090 * 10 9 7 12 12 C 1.53043 * 109.31117 * 54.63623 * 11 10 9 13 13 C 1.53047 * 109.52620 * 298.64048 * 12 11 10 14 14 H 1.09000 * 109.49675 * 301.40692 * 13 12 11 15 15 C 1.52997 * 109.49771 * 181.31352 * 13 12 11 16 16 N 1.46494 * 109.47089 * 174.99943 * 15 13 12 17 17 C 1.34780 * 119.99947 * 179.97438 * 16 15 13 18 18 O 1.21600 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.47518 * 120.00078 * 180.02562 * 17 16 15 20 20 C 1.36597 * 125.77142 * 180.02562 * 19 17 16 21 21 N 1.34806 * 106.84195 * 179.97438 * 20 19 17 22 22 C 1.46501 * 126.59777 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47549 * 124.99883 * 22 21 20 24 24 C 1.53001 * 117.50010 * 243.75054 * 23 22 21 25 25 C 1.52996 * 117.50195 * 175.08737 * 23 22 21 26 26 N 1.40206 * 106.81227 * 359.97438 * 21 20 19 27 27 N 1.28760 * 108.36704 * 359.75036 * 26 21 20 28 28 C 1.46922 * 120.63446 * 207.69606 * 9 7 2 29 29 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58612 * 6.62572 * 10 9 7 31 31 H 1.08997 * 109.70206 * 246.27134 * 10 9 7 32 32 H 1.08994 * 109.49527 * 294.68626 * 11 10 9 33 33 H 1.08996 * 109.49341 * 174.58476 * 11 10 9 34 34 H 1.08998 * 109.46235 * 58.65409 * 12 11 10 35 35 H 1.08996 * 109.45635 * 178.63241 * 12 11 10 36 36 H 1.09002 * 109.47045 * 295.00107 * 15 13 12 37 37 H 1.09007 * 109.47329 * 54.99746 * 15 13 12 38 38 H 0.96999 * 120.00356 * 0.02562 * 16 15 13 39 39 H 1.08003 * 126.57870 * 359.94822 * 20 19 17 40 40 H 1.09001 * 109.47113 * 244.99986 * 22 21 20 41 41 H 1.09000 * 109.47108 * 4.99379 * 22 21 20 42 42 H 1.09004 * 115.54735 * 29.41659 * 23 22 21 43 43 H 1.08998 * 117.49982 * 359.97438 * 24 23 22 44 44 H 1.08996 * 117.50193 * 145.01400 * 24 23 22 45 45 H 1.08999 * 117.50180 * 214.97892 * 25 23 22 46 46 H 1.08999 * 117.49868 * 359.97438 * 25 23 22 47 47 H 1.09002 * 109.58987 * 353.37394 * 28 9 7 48 48 H 1.08999 * 109.59251 * 113.65944 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0534 -1.2234 0.2786 9 7 1.3725 -2.3608 -0.3549 10 6 0.2279 -2.3338 -1.2758 11 6 0.5008 -3.3034 -2.4301 12 6 0.8187 -4.6889 -1.8629 13 6 2.0743 -4.6091 -0.9916 14 1 2.9082 -4.2389 -1.5880 15 6 2.4103 -6.0006 -0.4514 16 7 3.6765 -5.9466 0.2832 17 6 4.1739 -7.0628 0.8518 18 8 3.5714 -8.1146 0.7552 19 6 5.4487 -7.0084 1.5920 20 6 6.0583 -8.0625 2.2110 21 7 7.1923 -7.5880 2.7643 22 6 8.1762 -8.3543 3.5331 23 6 9.5608 -8.1810 2.9058 24 6 10.2355 -9.4267 2.3279 25 6 10.7498 -8.8128 3.6325 26 7 7.2497 -6.2202 2.4616 27 7 6.2103 -5.9147 1.7658 28 6 1.8193 -3.6547 0.1789 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3253 -1.6686 31 1 -0.6756 -2.6390 -0.7481 32 1 1.3494 -2.9454 -3.0129 33 1 -0.3800 -3.3652 -3.0692 34 1 -0.0204 -5.0356 -1.2598 35 1 0.9894 -5.3864 -2.6829 36 1 1.6160 -6.3322 0.2174 37 1 2.5017 -6.7005 -1.2821 38 1 4.1567 -5.1074 0.3612 39 1 5.7002 -9.0807 2.2501 40 1 8.1953 -7.9929 4.5613 41 1 7.9026 -9.4094 3.5240 42 1 9.7297 -7.2338 2.3935 43 1 9.6931 -10.3697 2.3949 44 1 10.8485 -9.2990 1.4357 45 1 11.7009 -8.2815 3.5980 46 1 10.5456 -9.3516 4.5577 47 1 2.7401 -3.5177 0.7459 48 1 1.0480 -4.0680 0.8288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023673390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:08 Heat of formation + Delta-G solvation = 98.366641 kcal Electronic energy + Delta-G solvation = -27957.331083 eV Core-core repulsion = 24050.580171 eV Total energy + Delta-G solvation = -3906.750912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.38489 -39.40396 -38.24988 -37.68619 -34.83036 -34.37387 -32.92632 -31.27247 -30.39434 -30.21191 -28.33465 -25.67008 -25.20952 -23.46160 -23.00976 -22.74111 -22.03005 -21.45359 -20.85628 -20.17379 -19.08476 -18.26333 -16.86165 -16.56518 -16.34284 -15.93669 -15.53162 -15.17808 -14.83650 -14.75229 -14.64536 -14.22294 -13.97669 -13.69133 -13.53500 -13.37615 -12.72939 -12.61776 -12.29326 -12.23413 -12.16161 -12.12290 -12.11751 -11.46365 -11.23393 -11.14630 -10.97151 -10.86085 -10.67933 -10.48856 -10.42777 -10.19992 -10.14153 -10.08039 -9.85137 -9.52799 -9.47963 -9.36399 -8.85387 -8.41728 -6.62483 -5.74084 -3.16070 0.93531 1.62953 1.72170 3.09063 3.25666 3.31754 3.40918 3.48915 3.51746 3.73077 4.06013 4.12955 4.29594 4.34658 4.53240 4.57667 4.61436 4.76776 4.81312 5.03293 5.14019 5.18159 5.27898 5.35213 5.48420 5.49098 5.52160 5.52827 5.61901 5.68156 5.87350 5.99381 6.05425 6.09745 6.29196 6.37680 6.42469 6.54943 6.65758 6.74954 6.83892 6.90871 7.02581 7.44730 7.54754 7.72419 7.84507 7.85447 8.25422 8.49630 9.26249 9.89742 10.46237 11.34314 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002344 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.297956 B =11944.013216 C =13523.582215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.128 3.872 16 N -0.706 5.706 17 C 0.602 3.398 18 O -0.548 6.548 19 C -0.098 4.098 20 C 0.092 3.908 21 N -0.360 5.360 22 C 0.155 3.845 23 C -0.177 4.177 24 C -0.176 4.176 25 C -0.165 4.165 26 N -0.061 5.061 27 N -0.200 5.200 28 C 0.153 3.847 29 H 0.252 0.748 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.412 0.588 39 H 0.204 0.796 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.052 0.948 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.620 -21.190 4.655 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.004 3.996 16 N -0.356 5.356 17 C 0.386 3.614 18 O -0.425 6.425 19 C -0.238 4.238 20 C -0.065 4.065 21 N -0.145 5.145 22 C 0.034 3.966 23 C -0.195 4.195 24 C -0.213 4.213 25 C -0.202 4.202 26 N -0.042 5.042 27 N -0.073 5.073 28 C 0.026 3.974 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.220 0.780 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.070 0.930 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 16.890 -20.491 4.771 26.980 hybrid contribution 0.184 0.300 0.059 0.357 sum 17.075 -20.191 4.829 26.880 Atomic orbital electron populations 1.70051 1.05254 1.25302 1.54138 1.25027 0.95273 0.98400 1.01065 0.86247 0.79473 0.84031 0.77199 1.20183 1.21626 1.21802 1.19235 0.92739 0.84835 1.41121 0.91575 1.44052 1.35811 1.01204 1.50281 1.20796 0.88526 0.98421 0.87962 1.22173 1.00074 0.95970 0.99885 1.21339 0.96695 0.97740 0.97936 1.21954 0.98897 0.93512 0.99511 0.90723 1.21526 0.84387 0.98216 0.95472 1.45888 1.24556 1.11555 1.53607 1.16739 0.82290 0.84148 0.78229 1.90789 1.60195 1.29903 1.61616 1.21533 1.01020 0.90302 1.10918 1.23347 0.87127 1.01351 0.94687 1.50466 1.16802 1.09483 1.37740 1.21587 0.85038 0.95305 0.94716 1.22549 0.91825 0.99661 1.05505 1.23158 1.03798 0.96451 0.97915 1.23005 0.97537 1.03266 0.96425 1.82010 1.16466 0.89590 1.16097 1.74709 0.99809 1.24292 1.08526 1.20909 0.97614 0.86808 0.92100 0.93760 0.89555 0.96485 0.92736 0.93212 0.92456 0.93426 0.91297 0.91701 0.75214 0.77959 0.87834 0.87621 0.86075 0.88309 0.88279 0.88000 0.88187 0.92953 0.96344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 11.19 55.49 0.62 -25.88 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.85 2.99 -172.33 -0.52 -15.37 16 10 C 0.17 4.05 5.31 -3.70 -0.02 4.03 16 11 C -0.14 -2.70 6.08 -26.61 -0.16 -2.87 16 12 C -0.10 -1.65 5.17 -26.68 -0.14 -1.78 16 13 C -0.12 -2.00 2.37 -90.51 -0.21 -2.22 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.13 1.92 5.07 -4.05 -0.02 1.89 16 16 N -0.71 -10.50 5.33 -61.35 -0.33 -10.83 16 17 C 0.60 9.00 7.82 -12.48 -0.10 8.91 16 18 O -0.55 -9.17 16.86 5.28 0.09 -9.08 16 19 C -0.10 -1.30 6.99 -83.55 -0.58 -1.89 16 20 C 0.09 0.89 11.27 -16.84 -0.19 0.70 16 21 N -0.36 -3.28 3.69 -61.06 -0.23 -3.51 16 22 C 0.15 0.76 6.82 -4.04 -0.03 0.73 16 23 C -0.18 -0.94 5.93 -90.62 -0.54 -1.48 16 24 C -0.18 -0.74 10.18 -26.69 -0.27 -1.01 16 25 C -0.16 -0.60 10.25 -26.69 -0.27 -0.88 16 26 N -0.06 -0.79 13.48 60.35 0.81 0.03 16 27 N -0.20 -2.88 12.04 32.85 0.40 -2.49 16 28 C 0.15 3.18 5.60 -3.73 -0.02 3.16 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 6.14 7.39 -40.82 -0.30 5.84 16 39 H 0.20 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 0.23 7.82 -51.93 -0.41 -0.18 16 42 H 0.12 0.91 7.94 -51.93 -0.41 0.50 16 43 H 0.10 0.30 8.03 -51.93 -0.42 -0.11 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.05 1.08 7.14 -51.93 -0.37 0.71 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -33.54 394.31 -8.71 -42.25 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.69 Total: 1.77 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.79 Total: 0.18 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.76 Total: -58.04 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.54 -8.71 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023673390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.620 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds