Wall clock time and date at job start Tue Mar 31 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48498 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47336 * 300.00730 * 3 2 1 6 6 H 1.48506 * 109.46834 * 60.00354 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00363 * 197.36691 * 7 2 1 9 9 N 1.36937 * 119.99953 * 17.35896 * 7 2 1 10 10 C 1.46935 * 120.62866 * 27.67595 * 9 7 2 11 11 C 1.53197 * 108.77543 * 126.41090 * 10 9 7 12 12 C 1.53043 * 109.31117 * 54.63623 * 11 10 9 13 13 C 1.53047 * 109.52620 * 298.64048 * 12 11 10 14 14 H 1.09000 * 109.49675 * 301.40692 * 13 12 11 15 15 C 1.52997 * 109.49771 * 181.31352 * 13 12 11 16 16 N 1.46494 * 109.47089 * 174.99943 * 15 13 12 17 17 C 1.34780 * 119.99947 * 179.97438 * 16 15 13 18 18 O 1.21600 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.47518 * 120.00078 * 180.02562 * 17 16 15 20 20 C 1.36597 * 125.77142 * 180.02562 * 19 17 16 21 21 N 1.34806 * 106.84195 * 179.97438 * 20 19 17 22 22 C 1.46501 * 126.59777 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47549 * 124.99883 * 22 21 20 24 24 C 1.53001 * 117.50010 * 243.75054 * 23 22 21 25 25 C 1.52996 * 117.50195 * 175.08737 * 23 22 21 26 26 N 1.40206 * 106.81227 * 359.97438 * 21 20 19 27 27 N 1.28760 * 108.36704 * 359.75036 * 26 21 20 28 28 C 1.46922 * 120.63446 * 207.69606 * 9 7 2 29 29 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58612 * 6.62572 * 10 9 7 31 31 H 1.08997 * 109.70206 * 246.27134 * 10 9 7 32 32 H 1.08994 * 109.49527 * 294.68626 * 11 10 9 33 33 H 1.08996 * 109.49341 * 174.58476 * 11 10 9 34 34 H 1.08998 * 109.46235 * 58.65409 * 12 11 10 35 35 H 1.08996 * 109.45635 * 178.63241 * 12 11 10 36 36 H 1.09002 * 109.47045 * 295.00107 * 15 13 12 37 37 H 1.09007 * 109.47329 * 54.99746 * 15 13 12 38 38 H 0.96999 * 120.00356 * 0.02562 * 16 15 13 39 39 H 1.08003 * 126.57870 * 359.94822 * 20 19 17 40 40 H 1.09001 * 109.47113 * 244.99986 * 22 21 20 41 41 H 1.09000 * 109.47108 * 4.99379 * 22 21 20 42 42 H 1.09004 * 115.54735 * 29.41659 * 23 22 21 43 43 H 1.08998 * 117.49982 * 359.97438 * 24 23 22 44 44 H 1.08996 * 117.50193 * 145.01400 * 24 23 22 45 45 H 1.08999 * 117.50180 * 214.97892 * 25 23 22 46 46 H 1.08999 * 117.49868 * 359.97438 * 25 23 22 47 47 H 1.09002 * 109.58987 * 353.37394 * 28 9 7 48 48 H 1.08999 * 109.59251 * 113.65944 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0534 -1.2234 0.2786 9 7 1.3725 -2.3608 -0.3549 10 6 0.2279 -2.3338 -1.2758 11 6 0.5008 -3.3034 -2.4301 12 6 0.8187 -4.6889 -1.8629 13 6 2.0743 -4.6091 -0.9916 14 1 2.9082 -4.2389 -1.5880 15 6 2.4103 -6.0006 -0.4514 16 7 3.6765 -5.9466 0.2832 17 6 4.1739 -7.0628 0.8518 18 8 3.5714 -8.1146 0.7552 19 6 5.4487 -7.0084 1.5920 20 6 6.0583 -8.0625 2.2110 21 7 7.1923 -7.5880 2.7643 22 6 8.1762 -8.3543 3.5331 23 6 9.5608 -8.1810 2.9058 24 6 10.2355 -9.4267 2.3279 25 6 10.7498 -8.8128 3.6325 26 7 7.2497 -6.2202 2.4616 27 7 6.2103 -5.9147 1.7658 28 6 1.8193 -3.6547 0.1789 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3253 -1.6686 31 1 -0.6756 -2.6390 -0.7481 32 1 1.3494 -2.9454 -3.0129 33 1 -0.3800 -3.3652 -3.0692 34 1 -0.0204 -5.0356 -1.2598 35 1 0.9894 -5.3864 -2.6829 36 1 1.6160 -6.3322 0.2174 37 1 2.5017 -6.7005 -1.2821 38 1 4.1567 -5.1074 0.3612 39 1 5.7002 -9.0807 2.2501 40 1 8.1953 -7.9929 4.5613 41 1 7.9026 -9.4094 3.5240 42 1 9.7297 -7.2338 2.3935 43 1 9.6931 -10.3697 2.3949 44 1 10.8485 -9.2990 1.4357 45 1 11.7009 -8.2815 3.5980 46 1 10.5456 -9.3516 4.5577 47 1 2.7401 -3.5177 0.7459 48 1 1.0480 -4.0680 0.8288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023673390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:07 Heat of formation + Delta-G solvation = 76.395975 kcal Electronic energy + Delta-G solvation = -27958.283803 eV Core-core repulsion = 24050.580171 eV Total energy + Delta-G solvation = -3907.703632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.24093 -40.59797 -39.27775 -38.62001 -36.27235 -35.16886 -34.59454 -32.38431 -32.26015 -31.57332 -28.97703 -27.28219 -26.89360 -24.50983 -23.80023 -23.52701 -23.26571 -22.46027 -22.03356 -21.17398 -20.54998 -19.18616 -18.61624 -17.46584 -17.23378 -17.07373 -16.80942 -16.39363 -16.08759 -15.74952 -15.55143 -15.31886 -15.20282 -15.00055 -14.82262 -14.50940 -14.37141 -14.00271 -13.73100 -13.53551 -13.31684 -13.00603 -12.89402 -12.82312 -12.52190 -12.41981 -12.23988 -12.23682 -11.95085 -11.80445 -11.63883 -11.56484 -11.42892 -11.31431 -11.12808 -11.04349 -10.97439 -10.53464 -10.41162 -10.00869 -8.67023 -7.86613 -5.31551 0.15388 0.61245 1.08282 1.45287 1.47203 1.58141 2.15747 2.24546 2.51255 2.78330 3.18985 3.26172 3.27567 3.60749 3.73455 3.85392 3.91882 3.96916 4.00410 4.03827 4.04497 4.10209 4.15219 4.43698 4.44340 4.52878 4.59676 4.63988 4.76476 4.78206 4.80262 4.90859 4.93002 4.99154 5.03216 5.13190 5.13407 5.22529 5.23843 5.35503 5.39982 5.47238 5.48186 5.58650 5.68384 5.80823 6.38887 6.42210 6.89504 7.11893 7.16052 7.87528 8.38667 9.19516 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002344 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.297956 B =11944.013216 C =13523.582215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.102 4.102 14 H 0.072 0.928 15 C 0.138 3.862 16 N -0.709 5.709 17 C 0.605 3.395 18 O -0.567 6.567 19 C -0.127 4.127 20 C 0.114 3.886 21 N -0.345 5.345 22 C 0.146 3.854 23 C -0.192 4.192 24 C -0.175 4.175 25 C -0.154 4.154 26 N -0.089 5.089 27 N -0.230 5.230 28 C 0.152 3.848 29 H 0.249 0.751 30 H 0.051 0.949 31 H -0.006 1.006 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.410 0.590 39 H 0.242 0.758 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.048 0.952 48 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.076 -23.954 4.784 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.122 4.122 14 H 0.091 0.909 15 C 0.014 3.986 16 N -0.359 5.359 17 C 0.390 3.610 18 O -0.447 6.447 19 C -0.267 4.267 20 C -0.044 4.044 21 N -0.129 5.129 22 C 0.028 3.972 23 C -0.211 4.211 24 C -0.212 4.212 25 C -0.191 4.191 26 N -0.070 5.070 27 N -0.103 5.103 28 C 0.026 3.974 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.013 0.987 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.246 0.754 39 H 0.258 0.742 40 H 0.135 0.865 41 H 0.162 0.838 42 H 0.110 0.890 43 H 0.135 0.865 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.138 0.862 47 H 0.067 0.933 48 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 18.394 -23.270 4.909 30.066 hybrid contribution -0.197 1.078 0.103 1.101 sum 18.198 -22.192 5.012 29.134 Atomic orbital electron populations 1.70198 1.06613 1.25691 1.55617 1.25772 0.96051 1.01451 1.01501 0.85245 0.78656 0.80020 0.76780 1.19189 1.21529 1.22011 1.19528 0.92903 0.86127 1.40352 0.91735 1.44317 1.35908 1.02009 1.51026 1.20649 0.87574 0.97910 0.89182 1.22007 1.00965 0.96028 0.97975 1.21333 0.96313 0.96747 0.98914 1.21718 0.99203 0.93539 0.97736 0.90926 1.21387 0.84451 0.96864 0.95889 1.45914 1.24498 1.11708 1.53790 1.16907 0.82647 0.83627 0.77827 1.90765 1.60989 1.30367 1.62533 1.21519 1.01053 0.91440 1.12724 1.23878 0.86232 1.01920 0.92381 1.50752 1.17060 1.08440 1.36683 1.22077 0.83776 0.96841 0.94544 1.22429 0.92878 0.99018 1.06795 1.23251 1.03514 0.96493 0.97922 1.23100 0.96526 1.02450 0.97039 1.81924 1.16363 0.91871 1.16801 1.74677 1.00574 1.25533 1.09563 1.21013 0.96832 0.85928 0.93629 0.94163 0.93047 0.98746 0.93007 0.91000 0.92272 0.89797 0.91644 0.90013 0.75399 0.74218 0.86540 0.83777 0.89019 0.86519 0.89104 0.88314 0.86197 0.93347 0.97323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 11.19 21.65 0.24 -56.40 16 2 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 3 Si 0.96 46.19 29.59 68.60 2.03 48.22 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.26 -14.63 9.58 84.03 0.81 -13.82 16 8 H 0.06 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -31.29 2.99 -699.14 -2.09 -33.38 16 10 C 0.17 8.47 5.31 86.36 0.46 8.93 16 11 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 12 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 13 C -0.10 -3.32 2.37 -10.72 -0.03 -3.35 16 14 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.14 3.91 5.07 86.38 0.44 4.35 16 16 N -0.71 -20.67 5.33 -466.28 -2.48 -23.15 16 17 C 0.60 17.52 7.82 86.69 0.68 18.20 16 18 O -0.57 -18.10 16.86 -4.03 -0.07 -18.16 16 19 C -0.13 -3.26 6.99 40.81 0.29 -2.97 16 20 C 0.11 1.94 11.27 83.85 0.95 2.88 16 21 N -0.35 -5.65 3.69 -347.10 -1.28 -6.93 16 22 C 0.15 1.02 6.82 86.38 0.59 1.61 16 23 C -0.19 -1.76 5.93 -10.80 -0.06 -1.82 16 24 C -0.17 -1.08 10.18 30.62 0.31 -0.77 16 25 C -0.15 -0.79 10.25 30.62 0.31 -0.47 16 26 N -0.09 -2.29 13.48 37.02 0.50 -1.79 16 27 N -0.23 -6.69 12.04 -50.00 -0.60 -7.30 16 28 C 0.15 6.39 5.60 86.35 0.48 6.88 16 29 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.05 2.87 6.04 -2.39 -0.01 2.85 16 31 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.41 12.29 7.39 -92.71 -0.69 11.61 16 39 H 0.24 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.14 -0.07 7.82 -2.39 -0.02 -0.09 16 42 H 0.09 1.41 7.94 -2.38 -0.02 1.39 16 43 H 0.12 0.31 8.03 -2.39 -0.02 0.29 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.05 2.04 7.14 -2.39 -0.02 2.02 16 48 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -75.65 394.31 2.50 -73.15 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.28 Total: 16.16 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.98 Total: 9.59 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.72 Total: -128.95 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.07 Total: -18.16 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.65 2.50 -73.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023673390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.544 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds