Wall clock time and date at job start Tue Mar 31 2020 18:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47122 * 274.90474 * 3 2 1 5 5 H 1.48498 * 109.46899 * 34.90440 * 3 2 1 6 6 H 1.48504 * 109.47117 * 154.90361 * 3 2 1 7 7 C 1.38815 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00028 * 339.76103 * 7 2 1 9 9 N 1.36936 * 119.99818 * 159.75365 * 7 2 1 10 10 C 1.46927 * 120.62654 * 152.77146 * 9 7 2 11 11 C 1.53188 * 108.77591 * 126.39616 * 10 9 7 12 12 C 1.53043 * 109.31403 * 54.63123 * 11 10 9 13 13 C 1.53042 * 109.53798 * 298.63618 * 12 11 10 14 14 H 1.09004 * 109.50109 * 301.38275 * 13 12 11 15 15 C 1.53006 * 109.49752 * 181.31603 * 13 12 11 16 16 N 1.46493 * 109.46864 * 175.06533 * 15 13 12 17 17 C 1.34778 * 120.00076 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99442 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00434 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.45918 * 59.96906 * 19 17 16 21 21 C 1.53110 * 109.45837 * 179.91786 * 19 17 16 22 22 C 1.53424 * 109.57657 * 190.08765 * 21 19 17 23 23 C 1.50587 * 108.33733 * 310.19196 * 22 21 19 24 24 N 1.32915 * 129.16108 * 196.60957 * 23 22 21 25 25 N 1.29014 * 108.63894 * 179.77421 * 24 23 22 26 26 N 1.29110 * 110.25823 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.01058 * 180.10644 * 26 25 24 28 28 C 1.34400 * 107.98358 * 0.06559 * 26 25 24 29 29 C 1.50534 * 129.25273 * 179.84895 * 28 26 25 30 30 C 1.46935 * 120.60802 * 332.75355 * 9 7 2 31 31 H 0.97004 * 119.99705 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.58923 * 6.60339 * 10 9 7 33 33 H 1.09007 * 109.58612 * 246.17704 * 10 9 7 34 34 H 1.09001 * 109.49688 * 294.68086 * 11 10 9 35 35 H 1.08999 * 109.52754 * 174.60271 * 11 10 9 36 36 H 1.09008 * 109.46088 * 178.62159 * 12 11 10 37 37 H 1.08999 * 109.46202 * 58.65666 * 12 11 10 38 38 H 1.08998 * 109.46715 * 295.06682 * 15 13 12 39 39 H 1.08999 * 109.47019 * 55.06869 * 15 13 12 40 40 H 0.97004 * 120.00436 * 0.02562 * 16 15 13 41 41 H 1.08999 * 109.45443 * 310.12345 * 21 19 17 42 42 H 1.09004 * 109.45093 * 70.05939 * 21 19 17 43 43 H 1.09004 * 109.68712 * 190.47539 * 22 21 19 44 44 H 1.09000 * 109.68508 * 69.90592 * 22 21 19 45 45 H 1.09002 * 109.69591 * 76.72171 * 29 28 26 46 46 H 1.09004 * 109.72630 * 316.15416 * 29 28 26 47 47 H 1.08998 * 109.56173 * 113.80367 * 30 9 7 48 48 H 1.08994 * 109.61209 * 353.37488 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3941 2.1062 -1.3949 5 1 1.5034 2.6205 0.8011 6 1 3.5958 1.4123 0.5938 7 6 2.0102 -1.2022 0.0005 8 1 1.5202 -2.1085 0.3245 9 7 3.3161 -1.2390 -0.4098 10 6 4.2334 -2.2656 0.1035 11 6 4.8801 -2.9869 -1.0831 12 6 5.5404 -1.9571 -2.0027 13 6 4.4779 -0.9967 -2.5420 14 1 3.7181 -1.5610 -3.0828 15 6 5.1338 0.0122 -3.4869 16 7 4.1012 0.8559 -4.0935 17 6 4.4478 1.8230 -4.9659 18 8 5.6146 1.9945 -5.2489 19 6 3.3856 2.6913 -5.5895 20 1 2.8457 3.2235 -4.8064 21 6 4.0426 3.7025 -6.5330 22 6 3.0055 4.7439 -6.9732 23 6 1.7783 4.0162 -7.4548 24 7 0.7681 4.4695 -8.1901 25 7 -0.0712 3.5074 -8.3756 26 7 0.3435 2.4335 -7.7910 27 1 -0.1097 1.5759 -7.7854 28 6 1.5140 2.7125 -7.1924 29 6 2.4061 1.8132 -6.3791 30 6 3.8260 -0.2527 -1.3722 31 1 -0.4850 0.8401 0.0004 32 1 3.6780 -2.9824 0.7084 33 1 5.0068 -1.7942 0.7101 34 1 4.1163 -3.5326 -1.6372 35 1 5.6335 -3.6851 -0.7185 36 1 6.0224 -2.4698 -2.8352 37 1 6.2868 -1.3949 -1.4415 38 1 5.8296 0.6362 -2.9259 39 1 5.6735 -0.5208 -4.2696 40 1 3.1680 0.7190 -3.8668 41 1 4.8620 4.2021 -6.0162 42 1 4.4297 3.1828 -7.4095 43 1 3.4142 5.3501 -7.7818 44 1 2.7461 5.3832 -6.1293 45 1 2.9608 1.1491 -7.0420 46 1 1.8030 1.2233 -5.6889 47 1 4.5657 0.3831 -0.8858 48 1 3.0022 0.3581 -1.7413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023695374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:26 Heat of formation + Delta-G solvation = 60.355683 kcal Electronic energy + Delta-G solvation = -29438.745801 eV Core-core repulsion = 25530.346610 eV Total energy + Delta-G solvation = -3908.399191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.67504 -40.15869 -38.31188 -36.78545 -34.95106 -34.11684 -33.19271 -31.48876 -30.78574 -30.53723 -30.19283 -26.15114 -25.39150 -24.73895 -23.39816 -23.01767 -22.49227 -21.06935 -20.72900 -19.72826 -19.36376 -18.43883 -17.22029 -16.91860 -16.42556 -15.96103 -15.77732 -15.55948 -14.62151 -14.31475 -14.28250 -14.14569 -14.06338 -13.87678 -13.72437 -13.38513 -13.32344 -12.96395 -12.63335 -12.35750 -12.25564 -12.12838 -11.83007 -11.69553 -11.54382 -11.44788 -11.30793 -10.90180 -10.84715 -10.69313 -10.60855 -10.54849 -10.21774 -10.05466 -9.80297 -9.78203 -9.55177 -9.14002 -9.02561 -8.73965 -7.08483 -6.06539 -3.42419 1.29345 2.28635 2.36103 2.64096 3.13442 3.16736 3.39391 3.41329 3.93049 4.20468 4.39727 4.42403 4.45774 4.65138 4.71786 4.80270 4.97314 5.05779 5.07483 5.13677 5.15204 5.21458 5.28056 5.34168 5.44844 5.51059 5.52573 5.70644 5.74214 5.76098 5.82034 5.92378 5.94820 6.01233 6.04239 6.06051 6.21731 6.25405 6.40594 6.46563 6.48365 6.57881 6.60312 6.62422 6.87646 7.48322 7.84629 8.16745 8.21424 8.21614 8.82924 9.60227 9.98604 11.09196 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003517 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.688012 B = 7960.449215 C = 9043.026226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.880 3.120 4 H -0.290 1.290 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.079 0.921 15 C 0.125 3.875 16 N -0.724 5.724 17 C 0.519 3.481 18 O -0.540 6.540 19 C -0.106 4.106 20 H 0.107 0.893 21 C -0.098 4.098 22 C -0.035 4.035 23 C -0.016 4.016 24 N -0.258 5.258 25 N -0.089 5.089 26 N -0.380 5.380 27 H 0.450 0.550 28 C -0.009 4.009 29 C -0.040 4.040 30 C 0.134 3.866 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.404 0.596 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.027 0.973 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 1.342 -12.867 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.218 1.218 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.140 4.140 14 H 0.098 0.902 15 C 0.001 3.999 16 N -0.376 5.376 17 C 0.305 3.695 18 O -0.417 6.417 19 C -0.128 4.128 20 H 0.125 0.875 21 C -0.137 4.137 22 C -0.074 4.074 23 C -0.156 4.156 24 N -0.124 5.124 25 N -0.068 5.068 26 N -0.099 5.099 27 H 0.295 0.705 28 C -0.145 4.145 29 C -0.079 4.079 30 C 0.008 3.992 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.240 0.760 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.044 0.956 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.264 2.304 -13.900 15.852 hybrid contribution 0.217 -0.208 0.836 0.888 sum 7.480 2.095 -13.064 15.199 Atomic orbital electron populations 1.69833 1.05665 1.26516 1.53045 1.25275 0.95207 0.97418 0.99680 0.87010 0.80214 0.84759 0.76944 1.21791 1.23122 1.19539 1.18962 0.84751 0.94789 1.40226 0.89602 1.44347 1.08538 1.33030 1.47014 1.20963 0.92434 0.91237 0.93354 1.21988 0.99433 0.97483 0.98457 1.21345 0.96979 0.96874 0.98709 1.21985 0.98407 0.96558 0.97060 0.90232 1.21474 0.90279 0.92324 0.95831 1.46163 1.11619 1.34883 1.44902 1.20332 0.89740 0.80422 0.79018 1.90693 1.19499 1.69564 1.61967 1.21394 0.95548 0.96633 0.99196 0.87469 1.21468 0.97483 0.95546 0.99181 1.20026 0.89082 0.96860 1.01397 1.21772 0.99066 0.92367 1.02351 1.74823 1.01175 1.21571 1.14880 1.78573 1.21193 0.89213 1.17843 1.44702 1.16161 1.13590 1.35459 0.70456 1.21751 0.90786 0.98025 1.03905 1.20143 0.94770 0.95695 0.97315 1.21365 0.96869 0.91789 0.89129 0.92759 0.91904 0.95966 0.91968 0.92544 0.92750 0.92300 0.91572 0.91559 0.76025 0.89238 0.90657 0.89187 0.89542 0.88735 0.88877 0.95556 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.35 13.97 55.49 0.78 -25.58 16 2 C 0.02 0.63 5.24 -17.43 -0.09 0.53 16 3 Si 0.88 21.13 24.35 -169.99 -4.14 16.99 16 4 H -0.29 -6.42 6.70 56.52 0.38 -6.04 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.51 6.46 56.52 0.36 -6.15 16 7 C -0.26 -6.81 10.04 -15.06 -0.15 -6.96 16 8 H 0.09 2.43 8.05 -52.49 -0.42 2.01 16 9 N -0.61 -13.32 2.77 -172.32 -0.48 -13.80 16 10 C 0.15 2.67 6.52 -3.71 -0.02 2.64 16 11 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 12 C -0.10 -1.38 5.17 -26.69 -0.14 -1.51 16 13 C -0.12 -1.80 2.37 -90.50 -0.21 -2.01 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.12 1.69 5.07 -4.04 -0.02 1.67 16 16 N -0.72 -9.37 5.23 -60.30 -0.32 -9.68 16 17 C 0.52 6.63 7.13 -10.99 -0.08 6.55 16 18 O -0.54 -8.47 15.81 5.56 0.09 -8.38 16 19 C -0.11 -1.06 2.50 -91.49 -0.23 -1.29 16 20 H 0.11 1.07 8.12 -51.93 -0.42 0.65 16 21 C -0.10 -0.92 4.64 -26.45 -0.12 -1.05 16 22 C -0.03 -0.32 6.30 -27.72 -0.17 -0.49 16 23 C -0.02 -0.18 7.11 -83.13 -0.59 -0.77 16 24 N -0.26 -3.58 12.40 33.16 0.41 -3.17 16 25 N -0.09 -1.15 13.40 60.35 0.81 -0.34 16 26 N -0.38 -3.63 6.97 33.39 0.23 -3.40 16 27 H 0.45 2.59 8.96 -190.07 -1.70 0.89 16 28 C -0.01 -0.09 7.15 -82.50 -0.59 -0.68 16 29 C -0.04 -0.33 5.43 -27.74 -0.15 -0.48 16 30 C 0.13 2.61 3.28 -3.71 -0.01 2.60 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 5.07 7.37 -40.82 -0.30 4.77 16 41 H 0.09 0.87 7.76 -51.93 -0.40 0.47 16 42 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.09 0.69 7.90 -51.93 -0.41 0.28 16 47 H 0.03 0.54 6.98 -51.93 -0.36 0.17 16 48 H 0.07 1.43 3.71 -51.93 -0.19 1.23 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -33.33 371.94 -8.66 -41.99 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.89 Total: 3.15 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.75 Total: -3.39 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 1.43 Total: -55.96 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.33 -8.66 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023695374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.346 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds