Wall clock time and date at job start Tue Mar 31 2020 18:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47122 * 274.90474 * 3 2 1 5 5 H 1.48498 * 109.46899 * 34.90440 * 3 2 1 6 6 H 1.48504 * 109.47117 * 154.90361 * 3 2 1 7 7 C 1.38815 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00028 * 339.76103 * 7 2 1 9 9 N 1.36936 * 119.99818 * 159.75365 * 7 2 1 10 10 C 1.46927 * 120.62654 * 152.77146 * 9 7 2 11 11 C 1.53188 * 108.77591 * 126.39616 * 10 9 7 12 12 C 1.53043 * 109.31403 * 54.63123 * 11 10 9 13 13 C 1.53042 * 109.53798 * 298.63618 * 12 11 10 14 14 H 1.09004 * 109.50109 * 301.38275 * 13 12 11 15 15 C 1.53006 * 109.49752 * 181.31603 * 13 12 11 16 16 N 1.46493 * 109.46864 * 175.06533 * 15 13 12 17 17 C 1.34778 * 120.00076 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99442 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00434 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.45918 * 59.96906 * 19 17 16 21 21 C 1.53110 * 109.45837 * 179.91786 * 19 17 16 22 22 C 1.53424 * 109.57657 * 190.08765 * 21 19 17 23 23 C 1.50587 * 108.33733 * 310.19196 * 22 21 19 24 24 N 1.32915 * 129.16108 * 196.60957 * 23 22 21 25 25 N 1.29014 * 108.63894 * 179.77421 * 24 23 22 26 26 N 1.29110 * 110.25823 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.01058 * 180.10644 * 26 25 24 28 28 C 1.34400 * 107.98358 * 0.06559 * 26 25 24 29 29 C 1.50534 * 129.25273 * 179.84895 * 28 26 25 30 30 C 1.46935 * 120.60802 * 332.75355 * 9 7 2 31 31 H 0.97004 * 119.99705 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.58923 * 6.60339 * 10 9 7 33 33 H 1.09007 * 109.58612 * 246.17704 * 10 9 7 34 34 H 1.09001 * 109.49688 * 294.68086 * 11 10 9 35 35 H 1.08999 * 109.52754 * 174.60271 * 11 10 9 36 36 H 1.09008 * 109.46088 * 178.62159 * 12 11 10 37 37 H 1.08999 * 109.46202 * 58.65666 * 12 11 10 38 38 H 1.08998 * 109.46715 * 295.06682 * 15 13 12 39 39 H 1.08999 * 109.47019 * 55.06869 * 15 13 12 40 40 H 0.97004 * 120.00436 * 0.02562 * 16 15 13 41 41 H 1.08999 * 109.45443 * 310.12345 * 21 19 17 42 42 H 1.09004 * 109.45093 * 70.05939 * 21 19 17 43 43 H 1.09004 * 109.68712 * 190.47539 * 22 21 19 44 44 H 1.09000 * 109.68508 * 69.90592 * 22 21 19 45 45 H 1.09002 * 109.69591 * 76.72171 * 29 28 26 46 46 H 1.09004 * 109.72630 * 316.15416 * 29 28 26 47 47 H 1.08998 * 109.56173 * 113.80367 * 30 9 7 48 48 H 1.08994 * 109.61209 * 353.37488 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3941 2.1062 -1.3949 5 1 1.5034 2.6205 0.8011 6 1 3.5958 1.4123 0.5938 7 6 2.0102 -1.2022 0.0005 8 1 1.5202 -2.1085 0.3245 9 7 3.3161 -1.2390 -0.4098 10 6 4.2334 -2.2656 0.1035 11 6 4.8801 -2.9869 -1.0831 12 6 5.5404 -1.9571 -2.0027 13 6 4.4779 -0.9967 -2.5420 14 1 3.7181 -1.5610 -3.0828 15 6 5.1338 0.0122 -3.4869 16 7 4.1012 0.8559 -4.0935 17 6 4.4478 1.8230 -4.9659 18 8 5.6146 1.9945 -5.2489 19 6 3.3856 2.6913 -5.5895 20 1 2.8457 3.2235 -4.8064 21 6 4.0426 3.7025 -6.5330 22 6 3.0055 4.7439 -6.9732 23 6 1.7783 4.0162 -7.4548 24 7 0.7681 4.4695 -8.1901 25 7 -0.0712 3.5074 -8.3756 26 7 0.3435 2.4335 -7.7910 27 1 -0.1097 1.5759 -7.7854 28 6 1.5140 2.7125 -7.1924 29 6 2.4061 1.8132 -6.3791 30 6 3.8260 -0.2527 -1.3722 31 1 -0.4850 0.8401 0.0004 32 1 3.6780 -2.9824 0.7084 33 1 5.0068 -1.7942 0.7101 34 1 4.1163 -3.5326 -1.6372 35 1 5.6335 -3.6851 -0.7185 36 1 6.0224 -2.4698 -2.8352 37 1 6.2868 -1.3949 -1.4415 38 1 5.8296 0.6362 -2.9259 39 1 5.6735 -0.5208 -4.2696 40 1 3.1680 0.7190 -3.8668 41 1 4.8620 4.2021 -6.0162 42 1 4.4297 3.1828 -7.4095 43 1 3.4142 5.3501 -7.7818 44 1 2.7461 5.3832 -6.1293 45 1 2.9608 1.1491 -7.0420 46 1 1.8030 1.2233 -5.6889 47 1 4.5657 0.3831 -0.8858 48 1 3.0022 0.3581 -1.7413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023695374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:25 Heat of formation + Delta-G solvation = 36.337899 kcal Electronic energy + Delta-G solvation = -29439.787291 eV Core-core repulsion = 25530.346610 eV Total energy + Delta-G solvation = -3909.440680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.51547 -41.16427 -39.64782 -37.66439 -36.20204 -34.99730 -34.77639 -32.92791 -32.24897 -31.35457 -31.14951 -27.35411 -27.07922 -25.62046 -24.37074 -23.97698 -23.77386 -22.37384 -21.72106 -20.90236 -20.38646 -19.24421 -18.81586 -18.13665 -17.34513 -17.24591 -16.88768 -16.72449 -16.02758 -15.59580 -15.30621 -15.12545 -15.08722 -14.94978 -14.83811 -14.66438 -14.48027 -14.40114 -13.91924 -13.60202 -13.35184 -13.15068 -13.08195 -13.02754 -12.66079 -12.53286 -12.25477 -12.17240 -12.10467 -12.05488 -11.67964 -11.64458 -11.54714 -11.37856 -11.34621 -11.24559 -10.82674 -10.63970 -10.08063 -9.95679 -8.90821 -8.15811 -5.46970 0.47890 1.24415 1.40459 1.42887 1.49073 1.50871 1.81135 2.18965 2.39244 3.06361 3.16044 3.33765 3.42192 3.63740 3.71653 3.87430 3.90855 3.94978 3.96996 4.01849 4.21332 4.32728 4.32903 4.45538 4.47952 4.51909 4.53817 4.65345 4.74334 4.76645 4.79049 4.84784 4.91399 4.96601 5.00635 5.09320 5.12688 5.18675 5.22634 5.27233 5.31680 5.33827 5.47079 5.61555 5.88117 5.92218 6.13873 6.48569 6.93506 7.17682 7.34624 7.64057 8.04674 9.03818 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003517 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.688012 B = 7960.449215 C = 9043.026226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.028 4.028 3 Si 0.937 3.063 4 H -0.260 1.260 5 H -0.319 1.319 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.052 0.948 9 N -0.621 5.621 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.099 4.099 13 C -0.106 4.106 14 H 0.077 0.923 15 C 0.131 3.869 16 N -0.725 5.725 17 C 0.523 3.477 18 O -0.569 6.569 19 C -0.102 4.102 20 H 0.110 0.890 21 C -0.091 4.091 22 C -0.030 4.030 23 C -0.031 4.031 24 N -0.292 5.292 25 N -0.116 5.116 26 N -0.364 5.364 27 H 0.465 0.535 28 C -0.001 4.001 29 C -0.034 4.034 30 C 0.131 3.869 31 H 0.261 0.739 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.407 0.593 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.022 0.978 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.919 0.899 -13.964 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.223 4.223 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.248 1.248 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.069 0.931 9 N -0.345 5.345 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.137 4.137 13 C -0.126 4.126 14 H 0.096 0.904 15 C 0.007 3.993 16 N -0.376 5.376 17 C 0.310 3.690 18 O -0.448 6.448 19 C -0.124 4.124 20 H 0.128 0.872 21 C -0.129 4.129 22 C -0.069 4.069 23 C -0.172 4.172 24 N -0.157 5.157 25 N -0.094 5.094 26 N -0.086 5.086 27 H 0.314 0.686 28 C -0.138 4.138 29 C -0.073 4.073 30 C 0.006 3.994 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.243 0.757 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.040 0.960 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.518 1.832 -15.027 17.882 hybrid contribution -0.452 -0.204 1.256 1.351 sum 9.067 1.627 -13.771 16.568 Atomic orbital electron populations 1.69957 1.07267 1.27044 1.55780 1.25789 0.95661 1.00339 1.00484 0.86070 0.78349 0.80702 0.78190 1.18615 1.24848 1.19601 1.18891 0.86576 0.93501 1.38695 0.93053 1.44496 1.07582 1.34324 1.48103 1.21175 0.91959 0.90508 0.95152 1.21882 0.99773 0.97798 0.96897 1.21381 0.96447 0.96384 0.99529 1.21796 0.98723 0.96696 0.95393 0.90445 1.21384 0.90135 0.91947 0.95828 1.46209 1.11673 1.34922 1.44838 1.20659 0.89757 0.80096 0.78454 1.90686 1.20853 1.70332 1.62924 1.21384 0.95090 0.96492 0.99468 0.87156 1.21395 0.97259 0.95357 0.98915 1.20058 0.88217 0.96791 1.01839 1.22201 0.99354 0.93285 1.02313 1.74780 1.02193 1.22550 1.16182 1.78505 1.21752 0.90007 1.19179 1.44720 1.15903 1.13687 1.34298 0.68618 1.21951 0.90709 0.97780 1.03317 1.20182 0.94394 0.95282 0.97449 1.21391 0.96346 0.91589 0.90074 0.93022 0.93065 0.95229 0.92752 0.89531 0.89652 0.91749 0.92233 0.89921 0.75730 0.89530 0.90702 0.88375 0.88958 0.87270 0.87445 0.95980 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.73 13.97 21.65 0.30 -56.43 16 2 C -0.03 -1.53 5.24 84.86 0.44 -1.08 16 3 Si 0.94 43.64 24.35 68.60 1.67 45.31 16 4 H -0.26 -10.69 6.70 99.48 0.67 -10.02 16 5 H -0.32 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.27 -12.49 6.46 99.48 0.64 -11.85 16 7 C -0.25 -13.18 10.04 84.03 0.84 -12.33 16 8 H 0.05 3.03 8.05 -2.91 -0.02 3.01 16 9 N -0.62 -26.79 2.77 -699.08 -1.94 -28.73 16 10 C 0.14 4.81 6.52 86.36 0.56 5.37 16 11 C -0.12 -3.27 6.08 30.67 0.19 -3.08 16 12 C -0.10 -2.31 5.17 30.62 0.16 -2.15 16 13 C -0.11 -2.86 2.37 -10.71 -0.03 -2.89 16 14 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.13 3.11 5.07 86.38 0.44 3.55 16 16 N -0.73 -16.65 5.23 -463.07 -2.42 -19.07 16 17 C 0.52 11.97 7.13 87.66 0.63 12.59 16 18 O -0.57 -16.47 15.81 -3.04 -0.05 -16.52 16 19 C -0.10 -1.80 2.50 -11.36 -0.03 -1.83 16 20 H 0.11 1.92 8.12 -2.39 -0.02 1.90 16 21 C -0.09 -1.53 4.64 30.77 0.14 -1.38 16 22 C -0.03 -0.51 6.30 29.95 0.19 -0.32 16 23 C -0.03 -0.68 7.11 41.74 0.30 -0.38 16 24 N -0.29 -7.94 12.40 -49.00 -0.61 -8.54 16 25 N -0.12 -2.90 13.40 37.02 0.50 -2.41 16 26 N -0.36 -6.42 6.97 -48.27 -0.34 -6.76 16 27 H 0.46 4.55 8.96 -219.68 -1.97 2.58 16 28 C 0.00 -0.01 7.15 41.50 0.30 0.29 16 29 C -0.03 -0.47 5.43 29.94 0.16 -0.31 16 30 C 0.13 4.83 3.28 86.36 0.28 5.12 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 33 H 0.03 1.00 8.14 -2.38 -0.02 0.99 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.41 9.07 7.37 -92.71 -0.68 8.38 16 41 H 0.09 1.53 7.76 -2.39 -0.02 1.51 16 42 H 0.07 1.27 8.12 -2.38 -0.02 1.25 16 43 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 1.29 8.12 -2.39 -0.02 1.27 16 46 H 0.11 1.26 7.90 -2.38 -0.02 1.24 16 47 H 0.02 0.85 6.98 -2.39 -0.02 0.83 16 48 H 0.05 2.11 3.71 -2.39 -0.01 2.10 16 Total: -1.00 -73.22 371.94 -0.08 -73.30 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -1.76 Total: 18.70 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 4.58 Total: 1.16 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -4.51 Total: -121.94 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.67 Total: 45.31 kcal Total: -73.22 -0.08 -73.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023695374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.635 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds