Wall clock time and date at job start Tue Mar 31 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99508 * 2 1 4 4 H 1.48495 * 109.47259 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47025 * 120.00353 * 3 2 1 6 6 H 1.48503 * 109.46879 * 239.99417 * 3 2 1 7 7 C 1.38812 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99900 * 193.73886 * 7 2 1 9 9 N 1.36938 * 119.99922 * 13.73405 * 7 2 1 10 10 C 1.46919 * 120.62792 * 31.21668 * 9 7 2 11 11 C 1.53196 * 108.77573 * 126.36525 * 10 9 7 12 12 C 1.53040 * 109.31085 * 54.63636 * 11 10 9 13 13 C 1.53044 * 109.53334 * 298.63229 * 12 11 10 14 14 C 1.46921 * 120.62824 * 210.93123 * 9 7 2 15 15 H 1.09007 * 109.58505 * 113.85074 * 14 9 7 16 16 C 1.52996 * 109.59076 * 353.42520 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.30664 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21591 * 120.00104 * 0.02562 * 18 17 16 20 20 C 1.47520 * 119.99446 * 179.97438 * 18 17 16 21 21 C 1.36603 * 125.76662 * 179.71946 * 20 18 17 22 22 N 1.34817 * 106.83875 * 179.90193 * 21 20 18 23 23 C 1.46495 * 126.59200 * 180.14956 * 22 21 20 24 24 C 1.53785 * 113.61763 * 12.76867 * 23 22 21 25 25 C 1.53781 * 87.08326 * 220.01804 * 24 23 22 26 26 C 1.53785 * 113.61519 * 275.27019 * 23 22 21 27 27 N 1.40203 * 106.81039 * 0.35891 * 22 21 20 28 28 N 1.28764 * 108.37197 * 359.76942 * 27 22 21 29 29 H 0.96993 * 120.00613 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.59306 * 246.15310 * 10 9 7 31 31 H 1.09005 * 109.58838 * 6.43659 * 10 9 7 32 32 H 1.09001 * 109.49651 * 174.58818 * 11 10 9 33 33 H 1.08999 * 109.49514 * 294.68073 * 11 10 9 34 34 H 1.08991 * 109.46280 * 58.65417 * 12 11 10 35 35 H 1.08999 * 109.45924 * 178.63175 * 12 11 10 36 36 H 1.09005 * 109.49212 * 181.31580 * 13 12 11 37 37 H 1.08996 * 109.50019 * 301.41155 * 13 12 11 38 38 H 1.08998 * 109.46969 * 180.31210 * 16 14 9 39 39 H 1.08997 * 109.47304 * 300.30838 * 16 14 9 40 40 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 41 41 H 1.08001 * 126.58033 * 0.03757 * 21 20 18 42 42 H 1.08997 * 112.84946 * 144.07793 * 23 22 21 43 43 H 1.09003 * 113.61111 * 334.56964 * 24 23 22 44 44 H 1.08995 * 113.61197 * 105.46831 * 24 23 22 45 45 H 1.08997 * 113.61243 * 270.88423 * 25 24 23 46 46 H 1.08994 * 113.69401 * 139.99227 * 25 24 23 47 47 H 1.09000 * 113.61223 * 254.52729 * 26 23 22 48 48 H 1.08994 * 113.61614 * 25.35131 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0671 -1.2153 0.2227 9 7 1.3550 -2.3712 -0.2805 10 6 0.2086 -2.3846 -1.1992 11 6 0.4650 -3.4265 -2.2926 12 6 0.7652 -4.7790 -1.6425 13 6 2.0243 -4.6640 -0.7800 14 6 1.7890 -3.6370 0.3261 15 1 1.0156 -4.0025 1.0018 16 6 3.0888 -3.4149 1.1021 17 7 2.8632 -2.4271 2.1601 18 6 3.8746 -2.0717 2.9770 19 8 4.9744 -2.5705 2.8355 20 6 3.6475 -1.0765 4.0420 21 6 4.5821 -0.6360 4.9356 22 7 3.9691 0.2646 5.7298 23 6 4.5754 1.0088 6.8364 24 6 6.1107 0.9244 6.8676 25 6 5.9947 0.8052 8.3964 26 6 4.5845 0.2365 8.1663 27 7 2.6385 0.3485 5.2959 28 7 2.4847 -0.4543 4.3010 29 1 -0.4851 0.8399 -0.0004 30 1 -0.6963 -2.6457 -0.6507 31 1 0.0907 -1.3994 -1.6507 32 1 -0.4182 -3.5149 -2.9252 33 1 1.3170 -3.1165 -2.8978 34 1 -0.0769 -5.0766 -1.0179 35 1 0.9242 -5.5276 -2.4186 36 1 2.2507 -5.6334 -0.3359 37 1 2.8615 -4.3425 -1.3994 38 1 3.4119 -4.3562 1.5466 39 1 3.8596 -3.0504 0.4231 40 1 1.9857 -2.0294 2.2732 41 1 5.6146 -0.9475 4.9933 42 1 4.1908 2.0248 6.9243 43 1 6.5086 0.0297 6.3887 44 1 6.6049 1.8379 6.5371 45 1 5.9994 1.7661 8.9108 46 1 6.6889 0.0876 8.8336 47 1 3.8468 0.5947 8.8843 48 1 4.5637 -0.8462 8.0426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024441441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:53 Heat of formation + Delta-G solvation = 82.313295 kcal Electronic energy + Delta-G solvation = -29538.543664 eV Core-core repulsion = 25631.096626 eV Total energy + Delta-G solvation = -3907.447038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.29669 -40.60843 -39.74245 -39.17525 -35.72029 -34.87906 -34.15839 -32.55887 -31.82516 -31.54463 -27.88858 -27.11091 -26.82178 -26.36886 -24.29519 -23.74661 -23.30478 -22.23124 -21.38922 -20.69589 -20.51133 -19.38292 -18.26560 -17.44411 -17.24571 -17.07527 -16.91573 -16.42750 -16.03221 -15.75934 -15.64527 -15.22327 -14.99809 -14.79599 -14.51989 -14.18282 -14.04037 -13.76577 -13.60285 -13.51102 -13.41661 -13.20734 -12.87825 -12.84084 -12.83072 -12.56305 -12.32238 -12.06785 -11.99579 -11.84612 -11.76986 -11.50733 -11.50120 -11.27426 -11.12525 -11.07440 -10.92561 -10.50571 -10.36761 -9.79586 -8.52528 -7.82309 -5.26952 0.13226 0.66800 1.10382 1.36739 1.39296 1.43065 2.24560 2.39670 2.49254 3.08477 3.24721 3.35123 3.37381 3.60079 3.66636 3.74254 3.77492 3.91357 4.01991 4.17262 4.25369 4.30197 4.44608 4.45978 4.57369 4.60172 4.65553 4.69241 4.74409 4.82723 4.89466 4.90339 4.93505 5.03121 5.04960 5.16833 5.25201 5.28940 5.31486 5.40366 5.49706 5.53698 5.60556 5.65668 5.76806 5.87202 6.45890 6.59826 6.96005 7.22166 7.24906 7.91572 8.43866 9.22792 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003468 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.784993 B = 8072.588003 C = 9153.202622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.935 3.065 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.120 4.120 14 C 0.157 3.843 15 H 0.028 0.972 16 C 0.138 3.862 17 N -0.683 5.683 18 C 0.594 3.406 19 O -0.579 6.579 20 C -0.122 4.122 21 C 0.104 3.896 22 N -0.337 5.337 23 C 0.097 3.903 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.143 4.143 27 N -0.099 5.099 28 N -0.229 5.229 29 H 0.246 0.754 30 H -0.002 1.002 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.413 0.587 41 H 0.235 0.765 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.612 -3.180 13.965 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.766 3.234 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.363 4.363 8 H 0.078 0.922 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.159 4.159 14 C 0.051 3.949 15 H 0.046 0.954 16 C 0.014 3.986 17 N -0.331 5.331 18 C 0.379 3.621 19 O -0.460 6.460 20 C -0.263 4.263 21 C -0.054 4.054 22 N -0.122 5.122 23 C -0.002 4.002 24 C -0.181 4.181 25 C -0.155 4.155 26 C -0.182 4.182 27 N -0.078 5.078 28 N -0.101 5.101 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.250 0.750 41 H 0.251 0.749 42 H 0.157 0.843 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.108 0.892 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.865 -2.695 14.106 18.008 hybrid contribution 0.344 1.272 -0.297 1.350 sum 11.209 -1.423 13.809 17.842 Atomic orbital electron populations 1.70084 1.05895 1.25134 1.55719 1.25412 0.95536 0.99808 1.01709 0.85841 0.77966 0.82191 0.77376 1.22181 1.22161 1.20734 1.19108 0.91462 0.84821 1.40942 0.92154 1.44235 1.35433 1.02711 1.50157 1.20582 0.87740 0.97082 0.89398 1.22039 1.00502 0.96594 0.98174 1.21349 0.97371 0.96434 0.98880 1.21811 0.98325 0.98552 0.97256 1.20834 0.93044 0.87720 0.93275 0.95447 1.21390 0.97764 0.91039 0.88387 1.45950 1.13884 1.42380 1.30915 1.16944 0.84247 0.80416 0.80480 1.90692 1.24286 1.57313 1.73734 1.21658 0.91694 1.07963 1.04948 1.23590 1.01192 0.90680 0.89917 1.50931 1.08637 1.28283 1.24347 1.24103 0.95674 0.97321 0.83140 1.23547 0.90381 1.05208 0.98985 1.22688 0.95191 1.03291 0.94373 1.23457 1.00137 1.00465 0.94112 1.81882 0.96031 1.19844 1.10065 1.74745 1.23513 1.04263 1.07608 0.94478 0.98427 0.93281 0.91776 0.93408 0.92624 0.90489 0.89654 0.92449 0.89993 0.92862 0.74997 0.74854 0.84274 0.88177 0.88280 0.87501 0.88522 0.89246 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.64 11.22 21.65 0.24 -54.40 16 2 C -0.03 -1.58 4.97 84.86 0.42 -1.16 16 3 Si 0.94 47.82 29.58 68.60 2.03 49.85 16 4 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 5 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 6 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.45 6.98 84.03 0.59 -11.86 16 8 H 0.06 3.31 5.85 -2.91 -0.02 3.29 16 9 N -0.60 -28.88 2.98 -676.04 -2.01 -30.89 16 10 C 0.18 8.41 5.27 86.37 0.46 8.86 16 11 C -0.13 -4.91 6.08 30.67 0.19 -4.73 16 12 C -0.10 -3.14 5.89 30.62 0.18 -2.96 16 13 C -0.12 -3.79 5.34 30.53 0.16 -3.62 16 14 C 0.16 6.19 2.99 44.83 0.13 6.32 16 15 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 16 C 0.14 5.32 4.42 86.38 0.38 5.71 16 17 N -0.68 -29.12 3.84 -466.29 -1.79 -30.91 16 18 C 0.59 24.50 7.82 86.69 0.68 25.18 16 19 O -0.58 -24.38 16.86 -4.00 -0.07 -24.45 16 20 C -0.12 -4.66 6.99 40.82 0.29 -4.37 16 21 C 0.10 2.93 10.49 83.85 0.88 3.81 16 22 N -0.34 -8.99 3.83 -324.03 -1.24 -10.23 16 23 C 0.10 1.53 5.06 45.52 0.23 1.76 16 24 C -0.14 -1.34 7.44 31.12 0.23 -1.11 16 25 C -0.12 -0.71 8.08 31.12 0.25 -0.46 16 26 C -0.14 -1.64 7.88 31.12 0.25 -1.40 16 27 N -0.10 -3.65 13.78 37.02 0.51 -3.14 16 28 N -0.23 -9.67 12.04 -49.99 -0.60 -10.27 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.05 2.66 6.19 -2.38 -0.01 2.65 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.05 2.22 7.41 -2.39 -0.02 2.20 16 40 H 0.41 19.59 7.09 -92.71 -0.66 18.94 16 41 H 0.24 4.58 6.78 -2.91 -0.02 4.56 16 42 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.10 0.90 6.39 -2.39 -0.02 0.89 16 44 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.79 381.30 2.70 -70.09 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.32 Total: 24.36 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 5.31 Total: 19.98 kcal Atomic # 7 Polarization: -134.95 SS G_CDS: -4.89 Total: -139.84 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -72.79 2.70 -70.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024441441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.406 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds