Wall clock time and date at job start Tue Mar 31 2020 18:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99387 * 2 1 4 4 H 1.48501 * 109.47214 * 264.72355 * 3 2 1 5 5 H 1.48495 * 109.47250 * 24.73243 * 3 2 1 6 6 H 1.48505 * 109.46703 * 144.73336 * 3 2 1 7 7 C 1.38810 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99548 * 34.46414 * 7 2 1 9 9 N 1.36926 * 120.00205 * 214.45983 * 7 2 1 10 10 C 1.46924 * 120.63232 * 39.88522 * 9 7 2 11 11 C 1.53192 * 108.78015 * 126.41162 * 10 9 7 12 12 C 1.53047 * 109.31055 * 54.63562 * 11 10 9 13 13 C 1.53042 * 109.53771 * 298.64062 * 12 11 10 14 14 C 1.46928 * 120.63220 * 219.90829 * 9 7 2 15 15 H 1.09002 * 109.70156 * 113.72993 * 14 9 7 16 16 C 1.52994 * 109.58876 * 353.37340 * 14 9 7 17 17 N 1.46507 * 109.47057 * 59.79495 * 16 14 9 18 18 C 1.34773 * 120.00028 * 180.02562 * 17 16 14 19 19 O 1.21287 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99991 * 180.02562 * 18 17 16 21 21 H 1.09001 * 109.68504 * 299.99895 * 20 18 17 22 22 C 1.53428 * 109.69506 * 179.45182 * 20 18 17 23 23 C 1.53101 * 109.55827 * 190.56283 * 22 20 18 24 24 C 1.53426 * 109.58173 * 70.05163 * 23 22 20 25 25 C 1.50596 * 108.33632 * 310.17948 * 24 23 22 26 26 N 1.32908 * 129.16694 * 196.54134 * 25 24 23 27 27 N 1.29022 * 108.63451 * 179.87471 * 26 25 24 28 28 N 1.29108 * 110.26168 * 0.02939 * 27 26 25 29 29 H 0.96995 * 126.00639 * 180.02562 * 28 27 26 30 30 C 1.34345 * 108.00395 * 0.03321 * 28 27 26 31 31 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.58470 * 6.62914 * 10 9 7 33 33 H 1.08997 * 109.59031 * 246.20503 * 10 9 7 34 34 H 1.09003 * 109.49382 * 294.69008 * 11 10 9 35 35 H 1.08993 * 109.50050 * 174.59184 * 11 10 9 36 36 H 1.08996 * 109.45782 * 58.65843 * 12 11 10 37 37 H 1.08996 * 109.45790 * 178.61534 * 12 11 10 38 38 H 1.08998 * 109.49443 * 181.31997 * 13 12 11 39 39 H 1.09004 * 109.49588 * 301.40967 * 13 12 11 40 40 H 1.08999 * 109.47586 * 179.79248 * 16 14 9 41 41 H 1.09002 * 109.47312 * 299.80046 * 16 14 9 42 42 H 0.97000 * 119.99775 * 0.02562 * 17 16 14 43 43 H 1.09003 * 109.45917 * 310.59270 * 22 20 18 44 44 H 1.09008 * 109.45785 * 70.53547 * 22 20 18 45 45 H 1.08999 * 109.45808 * 190.08449 * 23 22 20 46 46 H 1.08999 * 109.45155 * 310.02156 * 23 22 20 47 47 H 1.09001 * 109.68893 * 69.88520 * 24 23 22 48 48 H 1.08999 * 109.69488 * 190.46471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.6090 1.9822 -1.3941 5 1 1.3962 2.6822 0.5857 6 1 3.4875 1.4750 0.8084 7 6 2.0103 -1.2021 0.0005 8 1 1.6125 -2.0556 -0.5284 9 7 3.1994 -1.3058 0.6715 10 6 3.3785 -0.6640 1.9810 11 6 3.8634 -1.7158 2.9836 12 6 5.1229 -2.3926 2.4378 13 6 4.7950 -3.0969 1.1192 14 6 4.3207 -2.0607 0.0956 15 1 5.1385 -1.3802 -0.1414 16 6 3.8597 -2.7718 -1.1782 17 7 3.3863 -1.7801 -2.1471 18 6 2.9284 -2.1788 -3.3504 19 8 2.9087 -3.3585 -3.6313 20 6 2.4420 -1.1586 -4.3472 21 1 1.6080 -0.5994 -3.9231 22 6 1.9904 -1.8655 -5.6319 23 6 1.7475 -0.8268 -6.7302 24 6 3.0879 -0.2309 -7.1798 25 6 3.8512 0.1968 -5.9541 26 7 4.8965 1.0121 -5.8582 27 7 5.2351 1.1040 -4.6165 28 7 4.4547 0.3803 -3.8856 29 1 4.5044 0.2829 -2.9218 30 6 3.5617 -0.2143 -4.6942 31 1 -0.4851 0.8400 0.0004 32 1 2.4284 -0.2491 2.3175 33 1 4.1188 0.1319 1.8996 34 1 3.0840 -2.4633 3.1321 35 1 4.0920 -1.2342 3.9342 36 1 5.8935 -1.6411 2.2662 37 1 5.4841 -3.1243 3.1604 38 1 5.6868 -3.5983 0.7431 39 1 4.0069 -3.8314 1.2853 40 1 4.6938 -3.3282 -1.6059 41 1 3.0494 -3.4599 -0.9373 42 1 3.4024 -0.8366 -1.9226 43 1 2.7648 -2.5612 -5.9550 44 1 1.0677 -2.4133 -5.4399 45 1 1.2593 -1.3041 -7.5798 46 1 1.1086 -0.0327 -6.3439 47 1 3.6595 -0.9822 -7.7248 48 1 2.9096 0.6322 -7.8212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024623850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:11 Heat of formation + Delta-G solvation = 67.795508 kcal Electronic energy + Delta-G solvation = -30831.183848 eV Core-core repulsion = 26923.107272 eV Total energy + Delta-G solvation = -3908.076576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.47677 -39.69456 -38.19875 -36.68323 -34.54201 -33.80219 -33.18851 -31.27133 -30.87569 -30.26381 -30.07667 -26.47482 -25.16770 -24.13798 -23.07112 -22.59550 -22.51719 -20.92165 -20.55943 -19.60445 -19.42519 -18.11163 -17.09928 -16.56395 -16.08259 -15.73328 -15.50060 -15.26413 -14.87825 -14.36996 -13.98490 -13.92102 -13.77004 -13.65114 -13.50735 -13.38798 -13.17051 -12.68510 -12.39011 -12.28741 -11.99700 -11.73527 -11.63049 -11.42446 -11.39141 -11.27796 -11.06874 -10.96658 -10.80543 -10.66175 -10.61541 -10.33182 -10.32570 -10.03318 -9.84466 -9.77471 -9.54246 -8.81086 -8.73384 -8.49534 -6.95947 -6.31819 -3.62758 1.54269 2.50767 2.62752 2.92897 3.08295 3.27137 3.30267 3.53075 4.23383 4.30205 4.46802 4.62452 4.68613 4.84395 4.86870 5.01096 5.18698 5.24663 5.26859 5.35362 5.37245 5.39417 5.41195 5.58652 5.66833 5.75355 5.82506 5.85653 5.90709 5.97992 6.02038 6.04780 6.11272 6.14254 6.23533 6.30553 6.33218 6.34993 6.41390 6.50785 6.65071 6.75655 6.77655 6.84476 6.94429 7.76671 7.86185 8.19419 8.44750 8.51942 8.74130 9.45849 9.95549 10.82443 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004600 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.622612 B = 6085.157203 C = 6463.848405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.053 3.947 3 Si 0.819 3.181 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.255 1.255 7 C -0.281 4.281 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.143 3.857 11 C -0.138 4.138 12 C -0.108 4.108 13 C -0.126 4.126 14 C 0.155 3.845 15 H 0.032 0.968 16 C 0.135 3.865 17 N -0.696 5.696 18 C 0.516 3.484 19 O -0.542 6.542 20 C -0.037 4.037 21 H 0.124 0.876 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.032 4.032 25 C -0.013 4.013 26 N -0.260 5.260 27 N -0.087 5.087 28 N -0.378 5.378 29 H 0.445 0.555 30 C 0.000 4.000 31 H 0.265 0.735 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.398 0.602 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -2.310 -5.924 8.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.150 4.150 3 Si 0.645 3.355 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.179 1.179 7 C -0.408 4.408 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.018 3.982 11 C -0.177 4.177 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.048 3.952 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.348 5.348 18 C 0.301 3.699 19 O -0.420 6.420 20 C -0.060 4.060 21 H 0.141 0.859 22 C -0.132 4.132 23 C -0.159 4.159 24 C -0.071 4.071 25 C -0.153 4.153 26 N -0.126 5.126 27 N -0.066 5.066 28 N -0.098 5.098 29 H 0.293 0.707 30 C -0.136 4.136 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.235 0.765 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.772 -2.063 -6.246 9.441 hybrid contribution -0.487 0.984 1.172 1.606 sum 6.285 -1.079 -5.074 8.149 Atomic orbital electron populations 1.70069 1.06248 1.27156 1.47086 1.25547 0.94695 0.97192 0.97614 0.87771 0.82437 0.86822 0.78456 1.21681 1.21686 1.17906 1.18678 0.95080 0.95766 1.31303 0.90198 1.44338 1.10608 1.60954 1.16280 1.21333 0.99201 0.92887 0.84822 1.22047 0.97429 0.99981 0.98252 1.21365 0.97735 0.98959 0.96547 1.21900 1.00326 0.98420 0.95946 1.20869 0.90732 0.92631 0.90944 0.95062 1.21329 0.98723 0.91116 0.87706 1.46053 1.63370 1.11164 1.14172 1.20148 0.77880 0.89411 0.82499 1.90665 1.55349 1.17623 1.78330 1.20111 0.94734 0.93569 0.97617 0.85871 1.21429 1.03134 0.97386 0.91268 1.21696 0.96478 0.98841 0.98893 1.19995 0.94178 1.00953 0.92000 1.21703 0.97854 1.00573 0.95147 1.74789 1.12169 1.16429 1.09181 1.78554 1.15997 1.14703 0.97330 1.44870 1.21542 1.31369 1.11999 0.70746 1.21575 0.97714 1.02782 0.91510 0.92452 0.91533 0.95723 0.91920 0.93130 0.92835 0.93101 0.92658 0.91550 0.92246 0.90728 0.76519 0.90129 0.89636 0.90066 0.91106 0.89778 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.38 13.97 55.49 0.78 -22.61 16 2 C 0.05 1.32 4.82 -17.43 -0.08 1.23 16 3 Si 0.82 18.35 27.30 -169.99 -4.64 13.71 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.25 -5.46 5.12 56.52 0.29 -5.17 16 7 C -0.28 -6.52 6.75 -15.07 -0.10 -6.63 16 8 H 0.08 2.08 6.55 -52.48 -0.34 1.74 16 9 N -0.60 -11.90 2.48 -164.78 -0.41 -12.31 16 10 C 0.14 2.73 4.55 -3.71 -0.02 2.72 16 11 C -0.14 -2.20 6.08 -26.61 -0.16 -2.36 16 12 C -0.11 -1.52 5.88 -26.69 -0.16 -1.68 16 13 C -0.13 -1.85 5.37 -26.61 -0.14 -1.99 16 14 C 0.15 2.59 3.02 -67.60 -0.20 2.39 16 15 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 16 C 0.13 2.29 4.46 -4.04 -0.02 2.27 16 17 N -0.70 -12.03 3.54 -60.29 -0.21 -12.25 16 18 C 0.52 8.96 7.14 -10.99 -0.08 8.88 16 19 O -0.54 -10.62 15.83 5.55 0.09 -10.53 16 20 C -0.04 -0.54 2.90 -92.78 -0.27 -0.81 16 21 H 0.12 1.85 8.14 -51.93 -0.42 1.42 16 22 C -0.09 -1.15 4.66 -26.46 -0.12 -1.28 16 23 C -0.12 -1.19 5.90 -26.46 -0.16 -1.34 16 24 C -0.03 -0.35 6.30 -27.71 -0.17 -0.52 16 25 C -0.01 -0.19 7.11 -83.10 -0.59 -0.78 16 26 N -0.26 -4.38 12.40 33.18 0.41 -3.96 16 27 N -0.09 -1.49 13.40 60.35 0.81 -0.68 16 28 N -0.38 -5.98 6.76 33.39 0.23 -5.76 16 29 H 0.45 6.64 6.86 -190.08 -1.30 5.34 16 30 C 0.00 0.01 6.38 -82.50 -0.53 -0.52 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 33 H 0.02 0.48 6.65 -51.93 -0.35 0.13 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.42 7.43 -51.93 -0.39 1.04 16 42 H 0.40 7.00 5.46 -40.82 -0.22 6.78 16 43 H 0.08 1.04 7.74 -51.93 -0.40 0.64 16 44 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -28.73 366.20 -8.77 -37.49 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.53 Total: 11.79 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.81 Total: -0.43 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 1.60 Total: -57.56 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.64 Total: 13.71 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.73 -8.77 -37.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.291 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds