Wall clock time and date at job start Tue Mar 31 2020 18:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99387 * 2 1 4 4 H 1.48501 * 109.47214 * 264.72355 * 3 2 1 5 5 H 1.48495 * 109.47250 * 24.73243 * 3 2 1 6 6 H 1.48505 * 109.46703 * 144.73336 * 3 2 1 7 7 C 1.38810 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99548 * 34.46414 * 7 2 1 9 9 N 1.36926 * 120.00205 * 214.45983 * 7 2 1 10 10 C 1.46924 * 120.63232 * 39.88522 * 9 7 2 11 11 C 1.53192 * 108.78015 * 126.41162 * 10 9 7 12 12 C 1.53047 * 109.31055 * 54.63562 * 11 10 9 13 13 C 1.53042 * 109.53771 * 298.64062 * 12 11 10 14 14 C 1.46928 * 120.63220 * 219.90829 * 9 7 2 15 15 H 1.09002 * 109.70156 * 113.72993 * 14 9 7 16 16 C 1.52994 * 109.58876 * 353.37340 * 14 9 7 17 17 N 1.46507 * 109.47057 * 59.79495 * 16 14 9 18 18 C 1.34773 * 120.00028 * 180.02562 * 17 16 14 19 19 O 1.21287 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99991 * 180.02562 * 18 17 16 21 21 H 1.09001 * 109.68504 * 299.99895 * 20 18 17 22 22 C 1.53428 * 109.69506 * 179.45182 * 20 18 17 23 23 C 1.53101 * 109.55827 * 190.56283 * 22 20 18 24 24 C 1.53426 * 109.58173 * 70.05163 * 23 22 20 25 25 C 1.50596 * 108.33632 * 310.17948 * 24 23 22 26 26 N 1.32908 * 129.16694 * 196.54134 * 25 24 23 27 27 N 1.29022 * 108.63451 * 179.87471 * 26 25 24 28 28 N 1.29108 * 110.26168 * 0.02939 * 27 26 25 29 29 H 0.96995 * 126.00639 * 180.02562 * 28 27 26 30 30 C 1.34345 * 108.00395 * 0.03321 * 28 27 26 31 31 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.58470 * 6.62914 * 10 9 7 33 33 H 1.08997 * 109.59031 * 246.20503 * 10 9 7 34 34 H 1.09003 * 109.49382 * 294.69008 * 11 10 9 35 35 H 1.08993 * 109.50050 * 174.59184 * 11 10 9 36 36 H 1.08996 * 109.45782 * 58.65843 * 12 11 10 37 37 H 1.08996 * 109.45790 * 178.61534 * 12 11 10 38 38 H 1.08998 * 109.49443 * 181.31997 * 13 12 11 39 39 H 1.09004 * 109.49588 * 301.40967 * 13 12 11 40 40 H 1.08999 * 109.47586 * 179.79248 * 16 14 9 41 41 H 1.09002 * 109.47312 * 299.80046 * 16 14 9 42 42 H 0.97000 * 119.99775 * 0.02562 * 17 16 14 43 43 H 1.09003 * 109.45917 * 310.59270 * 22 20 18 44 44 H 1.09008 * 109.45785 * 70.53547 * 22 20 18 45 45 H 1.08999 * 109.45808 * 190.08449 * 23 22 20 46 46 H 1.08999 * 109.45155 * 310.02156 * 23 22 20 47 47 H 1.09001 * 109.68893 * 69.88520 * 24 23 22 48 48 H 1.08999 * 109.69488 * 190.46471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.6090 1.9822 -1.3941 5 1 1.3962 2.6822 0.5857 6 1 3.4875 1.4750 0.8084 7 6 2.0103 -1.2021 0.0005 8 1 1.6125 -2.0556 -0.5284 9 7 3.1994 -1.3058 0.6715 10 6 3.3785 -0.6640 1.9810 11 6 3.8634 -1.7158 2.9836 12 6 5.1229 -2.3926 2.4378 13 6 4.7950 -3.0969 1.1192 14 6 4.3207 -2.0607 0.0956 15 1 5.1385 -1.3802 -0.1414 16 6 3.8597 -2.7718 -1.1782 17 7 3.3863 -1.7801 -2.1471 18 6 2.9284 -2.1788 -3.3504 19 8 2.9087 -3.3585 -3.6313 20 6 2.4420 -1.1586 -4.3472 21 1 1.6080 -0.5994 -3.9231 22 6 1.9904 -1.8655 -5.6319 23 6 1.7475 -0.8268 -6.7302 24 6 3.0879 -0.2309 -7.1798 25 6 3.8512 0.1968 -5.9541 26 7 4.8965 1.0121 -5.8582 27 7 5.2351 1.1040 -4.6165 28 7 4.4547 0.3803 -3.8856 29 1 4.5044 0.2829 -2.9218 30 6 3.5617 -0.2143 -4.6942 31 1 -0.4851 0.8400 0.0004 32 1 2.4284 -0.2491 2.3175 33 1 4.1188 0.1319 1.8996 34 1 3.0840 -2.4633 3.1321 35 1 4.0920 -1.2342 3.9342 36 1 5.8935 -1.6411 2.2662 37 1 5.4841 -3.1243 3.1604 38 1 5.6868 -3.5983 0.7431 39 1 4.0069 -3.8314 1.2853 40 1 4.6938 -3.3282 -1.6059 41 1 3.0494 -3.4599 -0.9373 42 1 3.4024 -0.8366 -1.9226 43 1 2.7648 -2.5612 -5.9550 44 1 1.0677 -2.4133 -5.4399 45 1 1.2593 -1.3041 -7.5798 46 1 1.1086 -0.0327 -6.3439 47 1 3.6595 -0.9822 -7.7248 48 1 2.9096 0.6322 -7.8212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024623850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:10 Heat of formation + Delta-G solvation = 49.582906 kcal Electronic energy + Delta-G solvation = -30831.973605 eV Core-core repulsion = 26923.107272 eV Total energy + Delta-G solvation = -3908.866334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.68809 -41.08701 -39.60218 -37.75981 -35.94470 -35.04171 -34.89332 -32.71210 -32.40820 -31.40013 -31.20294 -27.90105 -26.64355 -25.35555 -24.28489 -24.09848 -23.62726 -22.28323 -21.93270 -20.92378 -20.57339 -19.38909 -18.57170 -18.05272 -17.39403 -17.23222 -16.89659 -16.70316 -16.31813 -15.47245 -15.42681 -15.05109 -14.94852 -14.84321 -14.80516 -14.73632 -14.53685 -14.33926 -13.87585 -13.54870 -13.26131 -13.14809 -12.89886 -12.76829 -12.71850 -12.52931 -12.40020 -12.25411 -12.10972 -12.05319 -11.70015 -11.66688 -11.55070 -11.42657 -11.29969 -11.22845 -10.91032 -10.52364 -10.03818 -10.00926 -8.65333 -8.25521 -5.51319 0.31194 1.25875 1.30263 1.39067 1.42426 1.44906 1.60140 2.20802 2.42663 2.89926 3.11818 3.31694 3.35255 3.56078 3.73785 3.85294 3.88808 4.11367 4.16226 4.18322 4.24204 4.30051 4.32655 4.41163 4.45010 4.52351 4.57106 4.66039 4.73685 4.91724 4.96377 4.97486 5.00881 5.07552 5.09678 5.16204 5.17998 5.26006 5.29066 5.30461 5.33730 5.41515 5.46226 5.58516 5.62852 5.91273 6.28454 6.43357 6.96480 7.09748 7.22641 7.63483 8.14416 8.93174 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004600 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.622612 B = 6085.157203 C = 6463.848405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.871 3.129 4 H -0.285 1.285 5 H -0.311 1.311 6 H -0.236 1.236 7 C -0.248 4.248 8 H 0.046 0.954 9 N -0.606 5.606 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.123 4.123 14 C 0.153 3.847 15 H 0.049 0.951 16 C 0.137 3.863 17 N -0.698 5.698 18 C 0.512 3.488 19 O -0.567 6.567 20 C -0.032 4.032 21 H 0.118 0.882 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.033 4.033 25 C -0.009 4.009 26 N -0.278 5.278 27 N -0.106 5.106 28 N -0.377 5.377 29 H 0.447 0.553 30 C -0.008 4.008 31 H 0.261 0.739 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.397 0.603 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -2.495 -6.483 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.697 3.303 4 H -0.212 1.212 5 H -0.239 1.239 6 H -0.160 1.160 7 C -0.377 4.377 8 H 0.064 0.936 9 N -0.332 5.332 10 C 0.014 3.986 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.162 4.162 14 C 0.048 3.952 15 H 0.067 0.933 16 C 0.014 3.986 17 N -0.348 5.348 18 C 0.298 3.702 19 O -0.446 6.446 20 C -0.056 4.056 21 H 0.136 0.864 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.072 4.072 25 C -0.150 4.150 26 N -0.144 5.144 27 N -0.084 5.084 28 N -0.098 5.098 29 H 0.294 0.706 30 C -0.145 4.145 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.233 0.767 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.132 0.868 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.848 -2.247 -6.794 11.380 hybrid contribution -1.102 0.930 1.388 2.002 sum 7.746 -1.317 -5.406 9.537 Atomic orbital electron populations 1.70167 1.07795 1.27302 1.50789 1.25890 0.94847 0.99539 0.98576 0.86950 0.81581 0.83071 0.78651 1.21185 1.23901 1.15973 1.18399 0.95680 0.94159 1.29476 0.93637 1.44440 1.10656 1.61291 1.16815 1.21350 0.98108 0.94077 0.85105 1.21957 0.98024 0.98764 0.98350 1.21362 0.96732 0.99603 0.96436 1.21875 1.01015 0.97498 0.95797 1.21063 0.89804 0.93095 0.91277 0.93301 1.21328 0.98305 0.90833 0.88154 1.46096 1.63272 1.11065 1.14353 1.20616 0.77202 0.89618 0.82775 1.90642 1.56365 1.18768 1.78860 1.20146 0.94314 0.92923 0.98172 0.86410 1.21476 1.02839 0.97876 0.90792 1.21693 0.96193 0.98141 0.98956 1.20233 0.94166 1.02090 0.90673 1.22386 0.97036 0.99227 0.96310 1.74774 1.13152 1.17324 1.09120 1.78518 1.16699 1.15477 0.97749 1.44903 1.21551 1.31203 1.12130 0.70582 1.21734 0.97841 1.03063 0.91848 0.92991 0.94381 0.95018 0.93498 0.90921 0.91659 0.90637 0.89745 0.92968 0.90368 0.93499 0.76716 0.90650 0.89527 0.86848 0.91114 0.88178 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.50 13.97 21.65 0.30 -51.20 16 2 C 0.01 0.56 4.82 84.86 0.41 0.97 16 3 Si 0.87 38.51 27.30 68.60 1.87 40.38 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 6 H -0.24 -9.59 5.12 99.48 0.51 -9.08 16 7 C -0.25 -11.77 6.75 84.03 0.57 -11.21 16 8 H 0.05 2.49 6.55 -2.91 -0.02 2.47 16 9 N -0.61 -23.84 2.48 -675.25 -1.68 -25.52 16 10 C 0.14 5.13 4.55 86.36 0.39 5.53 16 11 C -0.13 -3.91 6.08 30.67 0.19 -3.72 16 12 C -0.10 -2.53 5.88 30.62 0.18 -2.35 16 13 C -0.12 -3.25 5.37 30.67 0.16 -3.08 16 14 C 0.15 4.86 3.02 44.97 0.14 5.00 16 15 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 16 C 0.14 4.60 4.46 86.38 0.38 4.99 16 17 N -0.70 -24.17 3.54 -463.05 -1.64 -25.81 16 18 C 0.51 17.90 7.14 87.66 0.63 18.53 16 19 O -0.57 -22.38 15.83 -3.05 -0.05 -22.43 16 20 C -0.03 -0.94 2.90 -12.20 -0.04 -0.98 16 21 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 22 C -0.09 -2.14 4.66 30.77 0.14 -1.99 16 23 C -0.11 -1.90 5.90 30.77 0.18 -1.72 16 24 C -0.03 -0.62 6.30 29.96 0.19 -0.43 16 25 C -0.01 -0.25 7.11 41.76 0.30 0.04 16 26 N -0.28 -9.07 12.40 -48.95 -0.61 -9.68 16 27 N -0.11 -3.55 13.40 37.02 0.50 -3.05 16 28 N -0.38 -11.72 6.76 -48.26 -0.33 -12.05 16 29 H 0.45 13.08 6.86 -219.69 -1.51 11.58 16 30 C -0.01 -0.25 6.38 41.52 0.26 0.01 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.04 1.61 6.89 -2.39 -0.02 1.60 16 33 H 0.03 1.14 6.65 -2.39 -0.02 1.13 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 1.83 7.43 -2.39 -0.02 1.82 16 42 H 0.40 13.93 5.46 -92.71 -0.51 13.43 16 43 H 0.07 1.85 7.74 -2.39 -0.02 1.84 16 44 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 47 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -63.94 366.20 1.24 -62.70 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -1.22 Total: 37.08 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.09 Total: 9.58 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -3.45 Total: -127.31 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.87 Total: 40.38 kcal Total: -63.94 1.24 -62.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.283 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds