Wall clock time and date at job start Tue Mar 31 2020 18:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99376 * 2 1 4 4 H 1.48499 * 109.47093 * 174.99303 * 3 2 1 5 5 H 1.48496 * 109.47517 * 54.99324 * 3 2 1 6 6 H 1.48496 * 109.47309 * 294.98913 * 3 2 1 7 7 C 1.38809 * 120.00694 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00202 * 203.74664 * 7 2 1 9 9 N 1.36939 * 119.99550 * 23.74899 * 7 2 1 10 10 C 1.46926 * 120.63202 * 35.83196 * 9 7 2 11 11 C 1.53190 * 108.77670 * 126.37084 * 10 9 7 12 12 C 1.53032 * 109.31622 * 54.63331 * 11 10 9 13 13 C 1.53048 * 109.53872 * 298.63581 * 12 11 10 14 14 C 1.46925 * 120.63207 * 215.55005 * 9 7 2 15 15 H 1.08999 * 109.58735 * 113.84171 * 14 9 7 16 16 C 1.53007 * 109.58388 * 353.42103 * 14 9 7 17 17 N 1.46499 * 109.47071 * 177.60934 * 16 14 9 18 18 C 1.34778 * 119.99928 * 183.22078 * 17 16 14 19 19 O 1.21282 * 119.99994 * 5.16306 * 18 17 16 20 20 C 1.50693 * 120.00099 * 185.16233 * 18 17 16 21 21 H 1.09008 * 109.69028 * 40.34156 * 20 18 17 22 22 C 1.53438 * 109.69504 * 160.88343 * 20 18 17 23 23 C 1.53111 * 109.55703 * 169.43763 * 22 20 18 24 24 C 1.53419 * 109.57949 * 289.95005 * 23 22 20 25 25 C 1.50598 * 108.33835 * 49.82343 * 24 23 22 26 26 N 1.32904 * 129.16603 * 163.47795 * 25 24 23 27 27 N 1.29021 * 108.63746 * 180.10648 * 26 25 24 28 28 N 1.29111 * 110.25570 * 359.97052 * 27 26 25 29 29 H 0.96998 * 125.99901 * 179.91249 * 28 27 26 30 30 C 1.34395 * 107.98735 * 359.92924 * 28 27 26 31 31 H 0.97000 * 119.99416 * 185.79268 * 1 2 3 32 32 H 1.09007 * 109.58421 * 246.15486 * 10 9 7 33 33 H 1.08997 * 109.58801 * 6.43233 * 10 9 7 34 34 H 1.09001 * 109.49814 * 174.58894 * 11 10 9 35 35 H 1.09001 * 109.49476 * 294.64878 * 11 10 9 36 36 H 1.08993 * 109.46458 * 58.65590 * 12 11 10 37 37 H 1.09006 * 109.46013 * 178.63459 * 12 11 10 38 38 H 1.08997 * 109.49679 * 181.31841 * 13 12 11 39 39 H 1.09003 * 109.49853 * 301.38248 * 13 12 11 40 40 H 1.09004 * 109.47065 * 297.60375 * 16 14 9 41 41 H 1.08997 * 109.47114 * 57.60762 * 16 14 9 42 42 H 0.97000 * 120.00287 * 3.21710 * 17 16 14 43 43 H 1.09005 * 109.45310 * 289.46356 * 22 20 18 44 44 H 1.09000 * 109.45377 * 49.41069 * 22 20 18 45 45 H 1.09003 * 109.45195 * 49.98115 * 23 22 20 46 46 H 1.08999 * 109.45362 * 169.93269 * 23 22 20 47 47 H 1.08998 * 109.69486 * 169.53821 * 24 23 22 48 48 H 1.09007 * 109.68631 * 290.10976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7054 1.3493 0.1222 5 1 1.8019 2.4481 1.1467 6 1 1.9853 2.3422 -1.2690 7 6 2.0104 -1.2020 0.0005 8 1 3.0218 -1.2414 0.3772 9 7 1.4127 -2.3380 -0.4766 10 6 0.4940 -2.2762 -1.6215 11 6 0.9651 -3.2719 -2.6860 12 6 1.0938 -4.6614 -2.0578 13 6 2.1363 -4.6223 -0.9380 14 6 1.6827 -3.6426 0.1428 15 1 0.7747 -4.0181 0.6146 16 6 2.7857 -3.4935 1.1927 17 7 3.0132 -4.7836 1.8486 18 6 3.8999 -4.8787 2.8592 19 8 4.4399 -3.8810 3.2880 20 6 4.2202 -6.2246 3.4563 21 1 4.2924 -6.9701 2.6643 22 6 5.5501 -6.1491 4.2180 23 6 5.7445 -7.4276 5.0378 24 6 4.7428 -7.4507 6.1996 25 6 3.3713 -7.1622 5.6485 26 7 2.1825 -7.3664 6.2064 27 7 1.2683 -6.9767 5.3835 28 7 1.8057 -6.5213 4.3014 29 1 1.3298 -6.1708 3.5323 30 6 3.1401 -6.6186 4.4280 31 1 -0.4849 -0.8358 0.0848 32 1 -0.5130 -2.5379 -1.2965 33 1 0.4936 -1.2680 -2.0357 34 1 0.2396 -3.3059 -3.4989 35 1 1.9332 -2.9571 -3.0755 36 1 0.1309 -4.9649 -1.6470 37 1 1.4056 -5.3766 -2.8190 38 1 2.2444 -5.6174 -0.5067 39 1 3.0939 -4.2956 -1.3436 40 1 3.7056 -3.1646 0.7091 41 1 2.4824 -2.7564 1.9361 42 1 2.5257 -5.5693 1.5556 43 1 6.3701 -6.0452 3.5073 44 1 5.5375 -5.2878 4.8859 45 1 5.5808 -8.2962 4.3999 46 1 6.7598 -7.4541 5.4335 47 1 4.7499 -8.4333 6.6712 48 1 5.0121 -6.6894 6.9318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024623852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:14 Heat of formation + Delta-G solvation = 54.810752 kcal Electronic energy + Delta-G solvation = -29684.659132 eV Core-core repulsion = 25776.019495 eV Total energy + Delta-G solvation = -3908.639637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.73250 -40.01276 -38.20566 -36.96524 -34.78759 -34.09683 -33.42208 -31.43682 -30.52908 -30.38526 -29.82735 -26.38169 -25.04494 -24.52641 -23.36855 -22.87929 -22.22340 -21.07320 -20.76988 -19.81481 -19.29977 -18.56335 -17.56469 -16.95104 -16.35320 -15.87687 -15.68837 -14.90129 -14.73149 -14.38342 -14.19320 -14.08404 -14.02170 -13.71604 -13.64639 -13.50635 -13.24729 -13.01041 -12.56324 -12.42035 -11.88628 -11.74665 -11.66707 -11.54741 -11.48829 -11.34426 -11.18542 -10.93954 -10.73136 -10.59521 -10.54774 -10.36903 -10.13843 -10.08112 -9.97438 -9.86099 -9.24562 -9.10704 -8.96718 -8.44099 -6.95681 -6.13248 -3.43191 1.25180 2.24662 2.36565 2.55169 3.07258 3.47674 3.49690 3.63815 3.93898 4.16412 4.33323 4.45194 4.52639 4.58979 4.87277 4.91477 4.98059 5.01337 5.10932 5.20067 5.27715 5.29043 5.35880 5.49541 5.55849 5.61282 5.67413 5.70231 5.73637 5.74759 5.90738 5.96141 6.03206 6.07914 6.10889 6.28449 6.35461 6.38923 6.48520 6.53228 6.53883 6.67555 6.73693 6.96845 7.08456 7.40886 7.98758 8.11976 8.20974 8.50596 8.99609 9.72230 10.18124 11.11050 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003218 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.471054 B = 8698.083555 C = 9326.062515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.013 4.013 3 Si 1.067 2.933 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.361 4.361 8 H 0.057 0.943 9 N -0.588 5.588 10 C 0.157 3.843 11 C -0.139 4.139 12 C -0.109 4.109 13 C -0.131 4.131 14 C 0.166 3.834 15 H 0.025 0.975 16 C 0.130 3.870 17 N -0.730 5.730 18 C 0.508 3.492 19 O -0.517 6.517 20 C -0.031 4.031 21 H 0.113 0.887 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.036 4.036 25 C -0.006 4.006 26 N -0.259 5.259 27 N -0.080 5.080 28 N -0.378 5.378 29 H 0.448 0.552 30 C -0.007 4.007 31 H 0.269 0.731 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.390 0.610 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 -17.516 3.371 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.217 4.217 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.490 4.490 8 H 0.075 0.925 9 N -0.313 5.313 10 C 0.031 3.969 11 C -0.178 4.178 12 C -0.146 4.146 13 C -0.170 4.170 14 C 0.059 3.941 15 H 0.042 0.958 16 C 0.008 3.992 17 N -0.382 5.382 18 C 0.292 3.708 19 O -0.392 6.392 20 C -0.055 4.055 21 H 0.131 0.869 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.075 4.075 25 C -0.146 4.146 26 N -0.125 5.125 27 N -0.059 5.059 28 N -0.097 5.097 29 H 0.294 0.706 30 C -0.143 4.143 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.224 0.776 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.911 -15.409 4.483 17.892 hybrid contribution 0.284 -1.581 -1.359 2.104 sum 8.195 -16.990 3.124 19.120 Atomic orbital electron populations 1.70730 1.06747 1.30471 1.46612 1.25961 0.96487 1.01756 0.97464 0.83506 0.74612 0.75511 0.76739 1.21590 1.21906 1.21655 1.19899 0.96861 0.87790 1.44458 0.92514 1.43966 1.54150 1.01752 1.31464 1.20915 0.91421 0.97973 0.86592 1.22069 1.01063 0.95989 0.98668 1.21373 0.98636 0.97290 0.97348 1.22014 0.99427 0.97972 0.97631 1.20456 0.94106 0.88621 0.90894 0.95789 1.21621 0.99446 0.82584 0.95575 1.46290 1.42723 1.13343 1.35817 1.20297 0.80018 0.90467 0.80055 1.90757 1.50892 1.37581 1.59950 1.20040 0.93397 0.95821 0.96244 0.86900 1.21522 0.93397 0.99486 0.99593 1.21665 0.99445 0.97804 0.96691 1.20029 0.86395 1.03157 0.97881 1.21715 0.96223 1.04269 0.92362 1.74847 0.97478 1.17265 1.22864 1.78611 1.21149 1.14845 0.91313 1.44775 1.05641 1.42634 1.16630 0.70614 1.21406 0.85069 1.07853 1.00006 0.91977 0.96490 0.90903 0.93154 0.92342 0.92878 0.93404 0.93581 0.91948 0.91073 0.89842 0.77640 0.89869 0.89413 0.91235 0.89921 0.89509 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.25 12.73 55.49 0.71 -25.55 16 2 C -0.01 -0.34 4.68 -17.43 -0.08 -0.42 16 3 Si 1.07 24.92 29.98 -169.99 -5.10 19.83 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.36 -9.42 8.22 -15.06 -0.12 -9.54 16 8 H 0.06 1.52 6.56 -52.49 -0.34 1.17 16 9 N -0.59 -13.43 2.73 -165.03 -0.45 -13.88 16 10 C 0.16 3.40 4.82 -3.71 -0.02 3.38 16 11 C -0.14 -2.41 6.08 -26.62 -0.16 -2.57 16 12 C -0.11 -1.62 5.89 -26.69 -0.16 -1.77 16 13 C -0.13 -1.96 5.12 -26.83 -0.14 -2.09 16 14 C 0.17 3.03 3.03 -67.82 -0.21 2.82 16 15 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 16 C 0.13 2.31 3.89 -4.04 -0.02 2.29 16 17 N -0.73 -9.37 5.34 -60.29 -0.32 -9.69 16 18 C 0.51 6.85 6.95 -10.99 -0.08 6.78 16 19 O -0.52 -9.36 15.82 5.56 0.09 -9.28 16 20 C -0.03 -0.30 2.90 -92.78 -0.27 -0.57 16 21 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 22 C -0.10 -0.87 4.88 -26.45 -0.13 -1.00 16 23 C -0.12 -0.75 5.90 -26.46 -0.16 -0.90 16 24 C -0.04 -0.29 6.30 -27.72 -0.17 -0.46 16 25 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 26 N -0.26 -3.69 12.40 33.16 0.41 -3.27 16 27 N -0.08 -1.13 13.40 60.35 0.81 -0.32 16 28 N -0.38 -4.32 6.92 33.39 0.23 -4.09 16 29 H 0.45 4.14 8.92 -190.07 -1.69 2.45 16 30 C -0.01 -0.08 6.43 -82.50 -0.53 -0.61 16 31 H 0.27 7.84 7.00 -40.82 -0.29 7.56 16 32 H 0.02 0.38 7.88 -51.93 -0.41 -0.03 16 33 H 0.07 1.79 6.86 -51.93 -0.36 1.44 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.54 7.13 -51.93 -0.37 0.17 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.39 7.56 -51.93 -0.39 1.00 16 41 H 0.08 1.80 7.53 -51.93 -0.39 1.41 16 42 H 0.39 3.73 7.41 -40.82 -0.30 3.43 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.95 7.49 -51.93 -0.39 0.56 16 45 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -33.00 374.86 -9.61 -42.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.80 Total: 3.32 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.83 Total: -5.32 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 1.38 Total: -56.79 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.10 Total: 19.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.00 -9.61 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.412 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds