Wall clock time and date at job start Tue Mar 31 2020 18:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99376 * 2 1 4 4 H 1.48499 * 109.47093 * 174.99303 * 3 2 1 5 5 H 1.48496 * 109.47517 * 54.99324 * 3 2 1 6 6 H 1.48496 * 109.47309 * 294.98913 * 3 2 1 7 7 C 1.38809 * 120.00694 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00202 * 203.74664 * 7 2 1 9 9 N 1.36939 * 119.99550 * 23.74899 * 7 2 1 10 10 C 1.46926 * 120.63202 * 35.83196 * 9 7 2 11 11 C 1.53190 * 108.77670 * 126.37084 * 10 9 7 12 12 C 1.53032 * 109.31622 * 54.63331 * 11 10 9 13 13 C 1.53048 * 109.53872 * 298.63581 * 12 11 10 14 14 C 1.46925 * 120.63207 * 215.55005 * 9 7 2 15 15 H 1.08999 * 109.58735 * 113.84171 * 14 9 7 16 16 C 1.53007 * 109.58388 * 353.42103 * 14 9 7 17 17 N 1.46499 * 109.47071 * 177.60934 * 16 14 9 18 18 C 1.34778 * 119.99928 * 183.22078 * 17 16 14 19 19 O 1.21282 * 119.99994 * 5.16306 * 18 17 16 20 20 C 1.50693 * 120.00099 * 185.16233 * 18 17 16 21 21 H 1.09008 * 109.69028 * 40.34156 * 20 18 17 22 22 C 1.53438 * 109.69504 * 160.88343 * 20 18 17 23 23 C 1.53111 * 109.55703 * 169.43763 * 22 20 18 24 24 C 1.53419 * 109.57949 * 289.95005 * 23 22 20 25 25 C 1.50598 * 108.33835 * 49.82343 * 24 23 22 26 26 N 1.32904 * 129.16603 * 163.47795 * 25 24 23 27 27 N 1.29021 * 108.63746 * 180.10648 * 26 25 24 28 28 N 1.29111 * 110.25570 * 359.97052 * 27 26 25 29 29 H 0.96998 * 125.99901 * 179.91249 * 28 27 26 30 30 C 1.34395 * 107.98735 * 359.92924 * 28 27 26 31 31 H 0.97000 * 119.99416 * 185.79268 * 1 2 3 32 32 H 1.09007 * 109.58421 * 246.15486 * 10 9 7 33 33 H 1.08997 * 109.58801 * 6.43233 * 10 9 7 34 34 H 1.09001 * 109.49814 * 174.58894 * 11 10 9 35 35 H 1.09001 * 109.49476 * 294.64878 * 11 10 9 36 36 H 1.08993 * 109.46458 * 58.65590 * 12 11 10 37 37 H 1.09006 * 109.46013 * 178.63459 * 12 11 10 38 38 H 1.08997 * 109.49679 * 181.31841 * 13 12 11 39 39 H 1.09003 * 109.49853 * 301.38248 * 13 12 11 40 40 H 1.09004 * 109.47065 * 297.60375 * 16 14 9 41 41 H 1.08997 * 109.47114 * 57.60762 * 16 14 9 42 42 H 0.97000 * 120.00287 * 3.21710 * 17 16 14 43 43 H 1.09005 * 109.45310 * 289.46356 * 22 20 18 44 44 H 1.09000 * 109.45377 * 49.41069 * 22 20 18 45 45 H 1.09003 * 109.45195 * 49.98115 * 23 22 20 46 46 H 1.08999 * 109.45362 * 169.93269 * 23 22 20 47 47 H 1.08998 * 109.69486 * 169.53821 * 24 23 22 48 48 H 1.09007 * 109.68631 * 290.10976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7054 1.3493 0.1222 5 1 1.8019 2.4481 1.1467 6 1 1.9853 2.3422 -1.2690 7 6 2.0104 -1.2020 0.0005 8 1 3.0218 -1.2414 0.3772 9 7 1.4127 -2.3380 -0.4766 10 6 0.4940 -2.2762 -1.6215 11 6 0.9651 -3.2719 -2.6860 12 6 1.0938 -4.6614 -2.0578 13 6 2.1363 -4.6223 -0.9380 14 6 1.6827 -3.6426 0.1428 15 1 0.7747 -4.0181 0.6146 16 6 2.7857 -3.4935 1.1927 17 7 3.0132 -4.7836 1.8486 18 6 3.8999 -4.8787 2.8592 19 8 4.4399 -3.8810 3.2880 20 6 4.2202 -6.2246 3.4563 21 1 4.2924 -6.9701 2.6643 22 6 5.5501 -6.1491 4.2180 23 6 5.7445 -7.4276 5.0378 24 6 4.7428 -7.4507 6.1996 25 6 3.3713 -7.1622 5.6485 26 7 2.1825 -7.3664 6.2064 27 7 1.2683 -6.9767 5.3835 28 7 1.8057 -6.5213 4.3014 29 1 1.3298 -6.1708 3.5323 30 6 3.1401 -6.6186 4.4280 31 1 -0.4849 -0.8358 0.0848 32 1 -0.5130 -2.5379 -1.2965 33 1 0.4936 -1.2680 -2.0357 34 1 0.2396 -3.3059 -3.4989 35 1 1.9332 -2.9571 -3.0755 36 1 0.1309 -4.9649 -1.6470 37 1 1.4056 -5.3766 -2.8190 38 1 2.2444 -5.6174 -0.5067 39 1 3.0939 -4.2956 -1.3436 40 1 3.7056 -3.1646 0.7091 41 1 2.4824 -2.7564 1.9361 42 1 2.5257 -5.5693 1.5556 43 1 6.3701 -6.0452 3.5073 44 1 5.5375 -5.2878 4.8859 45 1 5.5808 -8.2962 4.3999 46 1 6.7598 -7.4541 5.4335 47 1 4.7499 -8.4333 6.6712 48 1 5.0121 -6.6894 6.9318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024623852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:14 Heat of formation + Delta-G solvation = 31.163369 kcal Electronic energy + Delta-G solvation = -29685.684559 eV Core-core repulsion = 25776.019495 eV Total energy + Delta-G solvation = -3909.665065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.65223 -41.18926 -39.68013 -37.78203 -36.15649 -35.17929 -35.04107 -32.76588 -31.73777 -31.29083 -31.21404 -27.74814 -26.79157 -25.48500 -24.32892 -23.88844 -23.64733 -22.48735 -21.93925 -20.85534 -20.56323 -19.61619 -19.02881 -18.23448 -17.41711 -17.17126 -16.72084 -16.37377 -15.81114 -15.79715 -15.49057 -15.22809 -15.08792 -15.01221 -14.87408 -14.69063 -14.54800 -14.37870 -13.94651 -13.35464 -13.23815 -13.17284 -12.82596 -12.70836 -12.54302 -12.48186 -12.26143 -12.03803 -12.02340 -11.95698 -11.77209 -11.72550 -11.68136 -11.39781 -11.36718 -11.07354 -10.99041 -10.49238 -10.28739 -10.00833 -8.91571 -8.20914 -5.50848 0.33433 1.26281 1.40268 1.54084 1.60240 1.62139 1.76361 1.93806 2.60451 3.11996 3.19539 3.32767 3.47003 3.54723 3.70541 3.84467 3.89902 4.01347 4.05491 4.14443 4.21439 4.25485 4.29894 4.35695 4.43198 4.45965 4.56878 4.61148 4.75311 4.92706 4.95783 4.97963 4.98653 5.00792 5.10209 5.12970 5.17434 5.19902 5.27540 5.29081 5.30586 5.31698 5.46102 5.57562 5.69776 5.91346 6.32171 6.40501 7.02392 7.07361 7.26110 7.73362 8.20162 8.97226 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003218 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.471054 B = 8698.083555 C = 9326.062515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.066 4.066 3 Si 1.107 2.893 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.350 4.350 8 H 0.046 0.954 9 N -0.608 5.608 10 C 0.160 3.840 11 C -0.130 4.130 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.163 3.837 15 H 0.027 0.973 16 C 0.151 3.849 17 N -0.712 5.712 18 C 0.508 3.492 19 O -0.567 6.567 20 C -0.017 4.017 21 H 0.158 0.842 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.039 4.039 25 C -0.012 4.012 26 N -0.288 5.288 27 N -0.111 5.111 28 N -0.371 5.371 29 H 0.455 0.545 30 C -0.006 4.006 31 H 0.255 0.745 32 H 0.005 0.995 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.412 0.588 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.840 -20.831 2.353 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.264 4.264 3 Si 0.933 3.067 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.480 4.480 8 H 0.064 0.936 9 N -0.334 5.334 10 C 0.034 3.966 11 C -0.169 4.169 12 C -0.142 4.142 13 C -0.160 4.160 14 C 0.057 3.943 15 H 0.045 0.955 16 C 0.027 3.973 17 N -0.366 5.366 18 C 0.294 3.706 19 O -0.445 6.445 20 C -0.040 4.040 21 H 0.175 0.825 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.078 4.078 25 C -0.153 4.153 26 N -0.153 5.153 27 N -0.089 5.089 28 N -0.091 5.091 29 H 0.303 0.697 30 C -0.143 4.143 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.249 0.751 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.754 -18.796 3.450 21.455 hybrid contribution -0.272 -0.577 -1.003 1.188 sum 9.482 -19.374 2.448 21.708 Atomic orbital electron populations 1.70843 1.07559 1.29496 1.49970 1.27057 0.96617 1.04761 0.97959 0.82951 0.74340 0.72708 0.76697 1.20160 1.22248 1.20978 1.20007 0.96294 0.89142 1.42514 0.93635 1.44194 1.54052 1.02674 1.32440 1.20796 0.90908 0.97346 0.87517 1.21952 1.00888 0.96395 0.97688 1.21383 0.99003 0.95934 0.97929 1.21923 0.98793 0.98855 0.96471 1.20663 0.94201 0.87318 0.92154 0.95524 1.21031 0.98189 0.83942 0.94177 1.45997 1.42852 1.12247 1.35489 1.21067 0.78788 0.91540 0.79223 1.90748 1.52612 1.39799 1.61343 1.20159 0.93164 0.93774 0.96939 0.82480 1.21587 0.93129 0.99794 0.99693 1.21652 1.00001 0.96952 0.95803 1.20245 0.84884 1.03887 0.98772 1.22366 0.96870 1.03651 0.92373 1.74815 0.98583 1.18294 1.23650 1.78563 1.21781 1.16338 0.92244 1.44805 1.06001 1.41953 1.16370 0.69743 1.21684 0.85007 1.07350 1.00257 0.93535 0.97749 0.94828 0.91155 0.93114 0.92211 0.89934 0.89012 0.92859 0.93040 0.94637 0.75122 0.88405 0.92205 0.89314 0.87596 0.88023 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.64 12.73 21.65 0.28 -56.37 16 2 C -0.07 -3.71 4.68 84.86 0.40 -3.32 16 3 Si 1.11 51.87 29.98 68.60 2.06 53.93 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.35 -18.88 8.22 84.03 0.69 -18.19 16 8 H 0.05 2.54 6.56 -2.91 -0.02 2.52 16 9 N -0.61 -28.33 2.73 -676.03 -1.85 -30.18 16 10 C 0.16 7.08 4.82 86.36 0.42 7.50 16 11 C -0.13 -4.30 6.08 30.67 0.19 -4.12 16 12 C -0.11 -2.71 5.89 30.62 0.18 -2.53 16 13 C -0.12 -3.21 5.12 30.53 0.16 -3.06 16 14 C 0.16 5.80 3.03 44.83 0.14 5.93 16 15 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 16 C 0.15 5.40 3.89 86.38 0.34 5.74 16 17 N -0.71 -17.08 5.34 -463.05 -2.47 -19.55 16 18 C 0.51 13.01 6.95 87.65 0.61 13.62 16 19 O -0.57 -20.75 15.82 -3.04 -0.05 -20.80 16 20 C -0.02 -0.27 2.90 -12.20 -0.04 -0.31 16 21 H 0.16 1.21 8.14 -2.38 -0.02 1.19 16 22 C -0.10 -1.49 4.88 30.78 0.15 -1.34 16 23 C -0.11 -0.93 5.90 30.77 0.18 -0.75 16 24 C -0.04 -0.54 6.30 29.96 0.19 -0.35 16 25 C -0.01 -0.26 7.11 41.75 0.30 0.04 16 26 N -0.29 -8.06 12.40 -48.99 -0.61 -8.66 16 27 N -0.11 -3.07 13.40 37.02 0.50 -2.58 16 28 N -0.37 -8.02 6.92 -48.27 -0.33 -8.36 16 29 H 0.46 7.77 8.92 -219.68 -1.96 5.81 16 30 C -0.01 -0.12 6.43 41.50 0.27 0.14 16 31 H 0.25 15.62 7.00 -92.71 -0.65 14.97 16 32 H 0.00 0.21 7.88 -2.38 -0.02 0.19 16 33 H 0.03 1.72 6.86 -2.39 -0.02 1.70 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.09 1.63 7.13 -2.39 -0.02 1.61 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 2.05 7.56 -2.38 -0.02 2.03 16 41 H 0.04 1.61 7.53 -2.39 -0.02 1.59 16 42 H 0.41 6.42 7.41 -92.71 -0.69 5.73 16 43 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.06 1.23 7.49 -2.39 -0.02 1.21 16 45 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -78.22 374.86 0.14 -78.08 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -1.53 Total: 15.47 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.16 Total: -0.99 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -4.49 Total: -125.69 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.06 Total: 53.93 kcal Total: -78.22 0.14 -78.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.240 kcal (2) G-P(sol) polarization free energy of solvation -78.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds