Wall clock time and date at job start Tue Mar 31 2020 18:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48505 * 109.47085 * 185.00175 * 3 2 1 5 5 H 1.48508 * 109.47279 * 304.99714 * 3 2 1 6 6 H 1.48500 * 109.47544 * 65.00010 * 3 2 1 7 7 C 1.38814 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 161.02623 * 7 2 1 9 9 N 1.36943 * 119.99855 * 341.02880 * 7 2 1 10 10 C 1.46923 * 120.63025 * 330.18425 * 9 7 2 11 11 C 1.53199 * 108.77224 * 233.58849 * 10 9 7 12 12 C 1.53046 * 109.31142 * 305.36267 * 11 10 9 13 13 C 1.53046 * 109.53525 * 61.36958 * 12 11 10 14 14 C 1.46927 * 120.62685 * 150.16178 * 9 7 2 15 15 H 1.08997 * 109.58341 * 246.34188 * 14 9 7 16 16 C 1.52995 * 109.58906 * 6.62724 * 14 9 7 17 17 N 1.46509 * 109.47136 * 297.74675 * 16 14 9 18 18 C 1.34775 * 119.99928 * 277.12863 * 17 16 14 19 19 O 1.21276 * 120.00084 * 4.74799 * 18 17 16 20 20 C 1.50701 * 119.99652 * 184.75223 * 18 17 16 21 21 H 1.08994 * 109.72219 * 327.27955 * 20 18 17 22 22 C 1.53439 * 109.69187 * 206.71386 * 20 18 17 23 23 C 1.53106 * 109.55038 * 190.58034 * 22 20 18 24 24 C 1.53422 * 109.57375 * 70.08211 * 23 22 20 25 25 C 1.50604 * 108.33103 * 310.18510 * 24 23 22 26 26 N 1.32909 * 129.16070 * 196.57463 * 25 24 23 27 27 N 1.29012 * 108.63536 * 179.79415 * 26 25 24 28 28 N 1.29108 * 110.26047 * 0.02562 * 27 26 25 29 29 H 0.97004 * 126.00880 * 180.02562 * 28 27 26 30 30 C 1.34397 * 107.98359 * 0.06145 * 28 27 26 31 31 H 0.96993 * 120.00038 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.58700 * 353.37221 * 10 9 7 33 33 H 1.08995 * 109.58440 * 113.66182 * 10 9 7 34 34 H 1.08995 * 109.50134 * 65.31806 * 11 10 9 35 35 H 1.09000 * 109.49300 * 185.38405 * 11 10 9 36 36 H 1.08995 * 109.45822 * 181.38530 * 12 11 10 37 37 H 1.08994 * 109.46132 * 301.34774 * 12 11 10 38 38 H 1.09000 * 109.49614 * 178.68356 * 13 12 11 39 39 H 1.08998 * 109.49429 * 58.58340 * 13 12 11 40 40 H 1.09000 * 109.47651 * 177.74967 * 16 14 9 41 41 H 1.08998 * 109.47475 * 57.74843 * 16 14 9 42 42 H 0.97002 * 119.99933 * 97.12681 * 17 16 14 43 43 H 1.08995 * 109.45700 * 310.61158 * 22 20 18 44 44 H 1.08999 * 109.45837 * 70.57305 * 22 20 18 45 45 H 1.09007 * 109.45268 * 190.10163 * 23 22 20 46 46 H 1.08997 * 109.45583 * 310.06595 * 23 22 20 47 47 H 1.09007 * 109.69123 * 190.47856 * 24 23 22 48 48 H 1.08995 * 109.70129 * 69.89566 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7056 1.3490 -0.1221 5 1 1.8023 2.4479 -1.1470 6 1 1.9853 2.3423 1.2689 7 6 2.0103 -1.2022 0.0005 8 1 3.0462 -1.2278 -0.3035 9 7 1.3813 -2.3557 0.3866 10 6 0.2903 -2.3204 1.3701 11 6 0.6173 -3.2968 2.5044 12 6 0.8887 -4.6834 1.9163 13 6 2.0946 -4.6136 0.9764 14 6 1.7843 -3.6521 -0.1752 15 1 0.9737 -4.0552 -0.7822 16 6 3.0321 -3.4701 -1.0416 17 7 2.7225 -2.5793 -2.1628 18 6 2.1329 -3.0706 -3.2707 19 8 1.7806 -4.2305 -3.3066 20 6 1.9117 -2.1785 -4.4650 21 1 1.7239 -1.1578 -4.1320 22 6 0.7118 -2.6870 -5.2750 23 6 0.6487 -1.9495 -6.6152 24 6 1.8142 -2.4003 -7.5053 25 6 3.0856 -2.3090 -6.7033 26 7 4.3459 -2.3067 -7.1254 27 7 5.1236 -2.2077 -6.1008 28 7 4.4273 -2.1448 -5.0154 29 1 4.7802 -2.0667 -4.1152 30 6 3.1277 -2.2075 -5.3519 31 1 -0.4850 0.8400 -0.0004 32 1 0.1936 -1.3120 1.7724 33 1 -0.6435 -2.6137 0.8906 34 1 1.5008 -2.9495 3.0400 35 1 -0.2268 -3.3515 3.1919 36 1 1.0975 -5.3856 2.7233 37 1 0.0137 -5.0195 1.3600 38 1 2.3017 -5.6060 0.5760 39 1 2.9641 -4.2538 1.5265 40 1 3.3528 -4.4387 -1.4250 41 1 3.8309 -3.0344 -0.4413 42 1 2.9418 -1.6360 -2.1077 43 1 0.8216 -3.7566 -5.4539 44 1 -0.2066 -2.5047 -4.7169 45 1 -0.2953 -2.1768 -7.1106 46 1 0.7186 -0.8756 -6.4423 47 1 1.8828 -1.7503 -8.3777 48 1 1.6551 -3.4299 -7.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024623855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:18 Heat of formation + Delta-G solvation = 63.569209 kcal Electronic energy + Delta-G solvation = -30492.844209 eV Core-core repulsion = 26584.584367 eV Total energy + Delta-G solvation = -3908.259842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.50569 -39.67754 -37.84049 -36.62768 -34.32554 -33.86736 -33.14242 -31.16161 -30.24542 -30.12494 -29.92347 -26.26479 -25.28978 -24.12141 -23.10590 -22.59831 -22.16866 -21.03187 -20.09935 -19.55611 -19.14163 -18.36104 -17.13171 -16.62190 -16.11165 -15.53276 -15.28772 -15.05630 -14.45152 -14.13928 -14.01646 -13.94916 -13.69498 -13.64679 -13.41873 -13.16893 -12.89099 -12.50463 -12.25203 -12.11326 -11.68265 -11.57261 -11.44033 -11.30771 -11.22345 -11.06380 -11.03123 -10.88288 -10.68321 -10.63990 -10.35917 -10.34667 -10.22297 -10.08241 -9.86532 -9.54543 -9.42661 -8.83645 -8.66101 -8.38561 -6.74474 -5.94956 -3.37783 1.49049 2.46819 2.62896 2.90724 3.18553 3.26856 3.31140 3.60406 4.19230 4.29222 4.53862 4.66469 4.84016 4.89723 5.15165 5.20128 5.25297 5.27696 5.33466 5.39343 5.52420 5.55214 5.63387 5.66982 5.82174 5.83134 5.91140 5.97157 6.03399 6.04181 6.10685 6.18800 6.22325 6.30945 6.33184 6.37604 6.56997 6.67523 6.70585 6.76094 6.80690 6.91363 7.09384 7.29037 7.52006 7.58334 7.94408 8.27841 8.40248 8.59179 9.02840 9.69452 10.31304 11.11670 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.004293 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.696419 B = 6519.940786 C = 7377.514381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.008 3.992 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.584 5.584 10 C 0.175 3.825 11 C -0.142 4.142 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.157 3.843 15 H 0.035 0.965 16 C 0.128 3.872 17 N -0.698 5.698 18 C 0.514 3.486 19 O -0.541 6.541 20 C -0.034 4.034 21 H 0.115 0.885 22 C -0.100 4.100 23 C -0.119 4.119 24 C -0.033 4.033 25 C -0.011 4.011 26 N -0.260 5.260 27 N -0.090 5.090 28 N -0.379 5.379 29 H 0.448 0.552 30 C 0.007 3.993 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.407 0.593 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -3.905 -6.311 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.307 5.307 10 C 0.049 3.951 11 C -0.181 4.181 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.049 3.951 15 H 0.053 0.947 16 C 0.004 3.996 17 N -0.349 5.349 18 C 0.298 3.702 19 O -0.418 6.418 20 C -0.058 4.058 21 H 0.133 0.867 22 C -0.138 4.138 23 C -0.157 4.157 24 C -0.072 4.072 25 C -0.151 4.151 26 N -0.126 5.126 27 N -0.069 5.069 28 N -0.098 5.098 29 H 0.294 0.706 30 C -0.129 4.129 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.245 0.755 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.608 -4.600 -7.092 9.191 hybrid contribution -0.280 1.577 1.471 2.174 sum 3.327 -3.023 -5.622 7.198 Atomic orbital electron populations 1.70056 1.05204 1.25435 1.52457 1.25038 0.95110 0.98037 1.00995 0.86511 0.79354 0.84792 0.77765 1.20302 1.21710 1.21371 1.18942 0.92630 0.85163 1.41548 0.92062 1.43986 1.40531 1.00920 1.45311 1.20679 0.89297 0.97754 0.87326 1.22168 1.00075 0.96381 0.99522 1.21354 0.98041 0.97215 0.97902 1.21959 0.98165 0.98613 0.98061 1.20848 0.94732 0.87884 0.91601 0.94707 1.21405 0.97919 0.93293 0.87023 1.46168 1.60562 1.13257 1.14954 1.20162 0.78122 0.88078 0.83863 1.90661 1.49949 1.18042 1.83157 1.20001 0.91200 1.01996 0.92553 0.86698 1.21488 0.95824 1.01605 0.94870 1.21673 0.98050 1.00806 0.95197 1.20006 0.87517 1.02843 0.96852 1.21686 0.94887 1.07194 0.91354 1.74794 1.00633 1.16083 1.21117 1.78535 1.19944 1.20884 0.87502 1.44723 1.05121 1.48676 1.11256 0.70615 1.21491 0.86273 1.08785 0.96373 0.93565 0.90320 0.96518 0.92855 0.93576 0.93820 0.92920 0.93204 0.92419 0.91485 0.90329 0.75467 0.89739 0.89783 0.90101 0.91165 0.89740 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.23 11.46 55.49 0.64 -22.60 16 2 C 0.01 0.21 4.84 -17.43 -0.08 0.12 16 3 Si 0.89 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -5.75 7.22 -15.06 -0.11 -5.86 16 8 H 0.06 1.30 5.28 -52.49 -0.28 1.03 16 9 N -0.58 -12.84 2.98 -164.78 -0.49 -13.34 16 10 C 0.18 3.91 5.30 -3.71 -0.02 3.89 16 11 C -0.14 -2.61 6.08 -26.60 -0.16 -2.77 16 12 C -0.11 -1.79 5.88 -26.68 -0.16 -1.95 16 13 C -0.13 -2.15 5.37 -26.61 -0.14 -2.29 16 14 C 0.16 3.03 3.10 -67.60 -0.21 2.82 16 15 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 16 C 0.13 2.12 4.68 -4.04 -0.02 2.10 16 17 N -0.70 -11.29 4.34 -60.29 -0.26 -11.55 16 18 C 0.51 8.52 6.81 -10.99 -0.07 8.44 16 19 O -0.54 -10.62 15.39 5.56 0.09 -10.54 16 20 C -0.03 -0.47 2.90 -92.78 -0.27 -0.73 16 21 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 22 C -0.10 -1.25 4.97 -26.45 -0.13 -1.38 16 23 C -0.12 -1.17 5.90 -26.46 -0.16 -1.33 16 24 C -0.03 -0.35 6.30 -27.71 -0.17 -0.52 16 25 C -0.01 -0.16 7.11 -83.12 -0.59 -0.75 16 26 N -0.26 -4.09 12.40 33.16 0.41 -3.68 16 27 N -0.09 -1.37 13.40 60.35 0.81 -0.56 16 28 N -0.38 -5.00 6.92 33.39 0.23 -4.76 16 29 H 0.45 4.80 8.96 -190.07 -1.70 3.10 16 30 C 0.01 0.10 6.43 -82.50 -0.53 -0.43 16 31 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.08 1.96 6.26 -51.93 -0.33 1.63 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.07 7.72 -51.93 -0.40 0.67 16 41 H 0.08 1.23 7.30 -51.93 -0.38 0.85 16 42 H 0.41 6.41 6.78 -40.82 -0.28 6.14 16 43 H 0.08 1.16 7.46 -51.93 -0.39 0.77 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -29.58 372.48 -9.62 -39.19 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.79 Total: 8.85 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.83 Total: -0.65 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 1.33 Total: -56.49 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.58 -9.62 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.763 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds