Wall clock time and date at job start Tue Mar 31 2020 18:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48505 * 109.47085 * 185.00175 * 3 2 1 5 5 H 1.48508 * 109.47279 * 304.99714 * 3 2 1 6 6 H 1.48500 * 109.47544 * 65.00010 * 3 2 1 7 7 C 1.38814 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 161.02623 * 7 2 1 9 9 N 1.36943 * 119.99855 * 341.02880 * 7 2 1 10 10 C 1.46923 * 120.63025 * 330.18425 * 9 7 2 11 11 C 1.53199 * 108.77224 * 233.58849 * 10 9 7 12 12 C 1.53046 * 109.31142 * 305.36267 * 11 10 9 13 13 C 1.53046 * 109.53525 * 61.36958 * 12 11 10 14 14 C 1.46927 * 120.62685 * 150.16178 * 9 7 2 15 15 H 1.08997 * 109.58341 * 246.34188 * 14 9 7 16 16 C 1.52995 * 109.58906 * 6.62724 * 14 9 7 17 17 N 1.46509 * 109.47136 * 297.74675 * 16 14 9 18 18 C 1.34775 * 119.99928 * 277.12863 * 17 16 14 19 19 O 1.21276 * 120.00084 * 4.74799 * 18 17 16 20 20 C 1.50701 * 119.99652 * 184.75223 * 18 17 16 21 21 H 1.08994 * 109.72219 * 327.27955 * 20 18 17 22 22 C 1.53439 * 109.69187 * 206.71386 * 20 18 17 23 23 C 1.53106 * 109.55038 * 190.58034 * 22 20 18 24 24 C 1.53422 * 109.57375 * 70.08211 * 23 22 20 25 25 C 1.50604 * 108.33103 * 310.18510 * 24 23 22 26 26 N 1.32909 * 129.16070 * 196.57463 * 25 24 23 27 27 N 1.29012 * 108.63536 * 179.79415 * 26 25 24 28 28 N 1.29108 * 110.26047 * 0.02562 * 27 26 25 29 29 H 0.97004 * 126.00880 * 180.02562 * 28 27 26 30 30 C 1.34397 * 107.98359 * 0.06145 * 28 27 26 31 31 H 0.96993 * 120.00038 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.58700 * 353.37221 * 10 9 7 33 33 H 1.08995 * 109.58440 * 113.66182 * 10 9 7 34 34 H 1.08995 * 109.50134 * 65.31806 * 11 10 9 35 35 H 1.09000 * 109.49300 * 185.38405 * 11 10 9 36 36 H 1.08995 * 109.45822 * 181.38530 * 12 11 10 37 37 H 1.08994 * 109.46132 * 301.34774 * 12 11 10 38 38 H 1.09000 * 109.49614 * 178.68356 * 13 12 11 39 39 H 1.08998 * 109.49429 * 58.58340 * 13 12 11 40 40 H 1.09000 * 109.47651 * 177.74967 * 16 14 9 41 41 H 1.08998 * 109.47475 * 57.74843 * 16 14 9 42 42 H 0.97002 * 119.99933 * 97.12681 * 17 16 14 43 43 H 1.08995 * 109.45700 * 310.61158 * 22 20 18 44 44 H 1.08999 * 109.45837 * 70.57305 * 22 20 18 45 45 H 1.09007 * 109.45268 * 190.10163 * 23 22 20 46 46 H 1.08997 * 109.45583 * 310.06595 * 23 22 20 47 47 H 1.09007 * 109.69123 * 190.47856 * 24 23 22 48 48 H 1.08995 * 109.70129 * 69.89566 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7056 1.3490 -0.1221 5 1 1.8023 2.4479 -1.1470 6 1 1.9853 2.3423 1.2689 7 6 2.0103 -1.2022 0.0005 8 1 3.0462 -1.2278 -0.3035 9 7 1.3813 -2.3557 0.3866 10 6 0.2903 -2.3204 1.3701 11 6 0.6173 -3.2968 2.5044 12 6 0.8887 -4.6834 1.9163 13 6 2.0946 -4.6136 0.9764 14 6 1.7843 -3.6521 -0.1752 15 1 0.9737 -4.0552 -0.7822 16 6 3.0321 -3.4701 -1.0416 17 7 2.7225 -2.5793 -2.1628 18 6 2.1329 -3.0706 -3.2707 19 8 1.7806 -4.2305 -3.3066 20 6 1.9117 -2.1785 -4.4650 21 1 1.7239 -1.1578 -4.1320 22 6 0.7118 -2.6870 -5.2750 23 6 0.6487 -1.9495 -6.6152 24 6 1.8142 -2.4003 -7.5053 25 6 3.0856 -2.3090 -6.7033 26 7 4.3459 -2.3067 -7.1254 27 7 5.1236 -2.2077 -6.1008 28 7 4.4273 -2.1448 -5.0154 29 1 4.7802 -2.0667 -4.1152 30 6 3.1277 -2.2075 -5.3519 31 1 -0.4850 0.8400 -0.0004 32 1 0.1936 -1.3120 1.7724 33 1 -0.6435 -2.6137 0.8906 34 1 1.5008 -2.9495 3.0400 35 1 -0.2268 -3.3515 3.1919 36 1 1.0975 -5.3856 2.7233 37 1 0.0137 -5.0195 1.3600 38 1 2.3017 -5.6060 0.5760 39 1 2.9641 -4.2538 1.5265 40 1 3.3528 -4.4387 -1.4250 41 1 3.8309 -3.0344 -0.4413 42 1 2.9418 -1.6360 -2.1077 43 1 0.8216 -3.7566 -5.4539 44 1 -0.2066 -2.5047 -4.7169 45 1 -0.2953 -2.1768 -7.1106 46 1 0.7186 -0.8756 -6.4423 47 1 1.8828 -1.7503 -8.3777 48 1 1.6551 -3.4299 -7.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024623855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:17 Heat of formation + Delta-G solvation = 44.634590 kcal Electronic energy + Delta-G solvation = -30493.665276 eV Core-core repulsion = 26584.584367 eV Total energy + Delta-G solvation = -3909.080909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.60035 -41.03708 -39.34064 -37.70457 -35.75018 -34.98658 -34.85805 -32.54316 -31.74003 -31.30008 -31.17214 -27.75292 -26.82597 -25.28588 -24.23339 -23.82323 -23.62516 -22.47781 -21.46523 -20.73605 -20.54006 -19.53609 -18.41442 -18.25866 -17.30881 -16.87314 -16.71616 -16.44643 -15.83977 -15.57714 -15.40563 -15.02337 -14.96533 -14.84966 -14.61347 -14.55489 -14.40773 -14.06620 -13.72534 -13.19641 -13.14719 -12.91543 -12.74161 -12.60836 -12.50525 -12.47323 -12.33647 -12.18274 -12.01799 -11.97569 -11.84594 -11.68710 -11.57053 -11.38592 -11.36366 -11.08104 -10.84726 -10.48826 -9.95138 -9.83217 -8.56709 -7.78982 -5.24032 0.38693 1.35860 1.45750 1.51365 1.53897 1.58862 1.69169 2.33381 2.52472 3.17287 3.36247 3.46380 3.58849 3.61609 3.79253 3.91100 4.09268 4.18874 4.21885 4.25616 4.27416 4.33025 4.39020 4.45428 4.57228 4.61033 4.67455 4.75370 4.82582 4.95576 4.96334 4.97679 5.09299 5.10695 5.15705 5.19370 5.26981 5.29156 5.34467 5.41902 5.44625 5.55132 5.63130 5.71493 5.76620 5.80048 6.43222 6.61043 7.18602 7.25050 7.29785 7.91305 8.50535 9.27287 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.004293 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.696419 B = 6519.940786 C = 7377.514381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.041 4.041 3 Si 0.942 3.058 4 H -0.256 1.256 5 H -0.298 1.298 6 H -0.305 1.305 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.594 5.594 10 C 0.180 3.820 11 C -0.132 4.132 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.155 3.845 15 H -0.003 1.003 16 C 0.130 3.870 17 N -0.696 5.696 18 C 0.512 3.488 19 O -0.573 6.573 20 C -0.026 4.026 21 H 0.121 0.879 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.033 4.033 25 C -0.013 4.013 26 N -0.284 5.284 27 N -0.105 5.105 28 N -0.368 5.368 29 H 0.457 0.543 30 C 0.002 3.998 31 H 0.245 0.755 32 H 0.048 0.952 33 H -0.017 1.017 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.410 0.590 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -4.363 -6.482 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.772 3.228 4 H -0.180 1.180 5 H -0.225 1.225 6 H -0.233 1.233 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.318 5.318 10 C 0.054 3.946 11 C -0.171 4.171 12 C -0.143 4.143 13 C -0.161 4.161 14 C 0.048 3.952 15 H 0.015 0.985 16 C 0.005 3.995 17 N -0.347 5.347 18 C 0.297 3.703 19 O -0.453 6.453 20 C -0.050 4.050 21 H 0.139 0.861 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.072 4.072 25 C -0.154 4.154 26 N -0.149 5.149 27 N -0.084 5.084 28 N -0.089 5.089 29 H 0.305 0.695 30 C -0.135 4.135 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.002 0.998 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.249 0.751 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.120 0.880 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.087 -5.068 -7.258 10.210 hybrid contribution -0.758 1.646 1.545 2.382 sum 4.328 -3.422 -5.714 7.943 Atomic orbital electron populations 1.70212 1.06799 1.25295 1.55220 1.25635 0.95472 1.00637 1.01941 0.85597 0.79473 0.81420 0.76290 1.18008 1.22529 1.23268 1.19375 0.93324 0.85157 1.39089 0.89984 1.44245 1.40137 1.01912 1.45501 1.20485 0.88441 0.97143 0.88543 1.22013 1.00725 0.96271 0.98054 1.21350 0.97678 0.96560 0.98684 1.21892 0.98454 0.98815 0.96984 1.20940 0.94666 0.86980 0.92613 0.98501 1.21426 0.96960 0.94163 0.86907 1.46156 1.60242 1.13346 1.14912 1.20621 0.77184 0.87940 0.84518 1.90643 1.51236 1.19594 1.83819 1.19971 0.91893 1.01560 0.91582 0.86126 1.21500 0.94793 1.01212 0.96258 1.21650 0.99051 1.00554 0.93478 1.20179 0.86015 1.03912 0.97103 1.22262 0.95382 1.05981 0.91770 1.74782 1.01451 1.17125 1.21582 1.78486 1.20334 1.21582 0.87967 1.44734 1.04934 1.47760 1.11454 0.69511 1.21496 0.86249 1.09323 0.96437 0.94544 0.93362 0.99842 0.92519 0.92150 0.90678 0.93996 0.91209 0.91336 0.90564 0.88570 0.75139 0.91014 0.90591 0.87570 0.90690 0.87953 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.13 11.46 21.65 0.25 -49.88 16 2 C -0.04 -1.96 4.84 84.86 0.41 -1.55 16 3 Si 0.94 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.30 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.24 -10.68 7.22 84.03 0.61 -10.08 16 8 H 0.08 3.29 5.28 -2.91 -0.02 3.28 16 9 N -0.59 -26.06 2.98 -675.24 -2.01 -28.07 16 10 C 0.18 8.20 5.30 86.37 0.46 8.66 16 11 C -0.13 -4.68 6.08 30.68 0.19 -4.49 16 12 C -0.11 -3.29 5.88 30.62 0.18 -3.11 16 13 C -0.12 -3.80 5.37 30.67 0.16 -3.64 16 14 C 0.15 5.86 3.10 44.97 0.14 6.00 16 15 H 0.00 -0.12 7.87 -2.39 -0.02 -0.14 16 16 C 0.13 4.09 4.68 86.38 0.40 4.49 16 17 N -0.70 -21.81 4.34 -463.06 -2.01 -23.81 16 18 C 0.51 16.80 6.81 87.66 0.60 17.40 16 19 O -0.57 -22.61 15.39 -3.02 -0.05 -22.66 16 20 C -0.03 -0.71 2.90 -12.19 -0.04 -0.75 16 21 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 22 C -0.10 -2.43 4.97 30.78 0.15 -2.27 16 23 C -0.11 -1.93 5.90 30.77 0.18 -1.74 16 24 C -0.03 -0.63 6.30 29.96 0.19 -0.44 16 25 C -0.01 -0.35 7.11 41.75 0.30 -0.06 16 26 N -0.28 -8.63 12.40 -48.99 -0.61 -9.24 16 27 N -0.11 -3.10 13.40 37.02 0.50 -2.60 16 28 N -0.37 -9.29 6.92 -48.27 -0.33 -9.62 16 29 H 0.46 9.19 8.96 -219.68 -1.97 7.22 16 30 C 0.00 0.04 6.43 41.50 0.27 0.31 16 31 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 32 H 0.05 2.48 6.26 -2.39 -0.01 2.46 16 33 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 2.30 7.72 -2.39 -0.02 2.28 16 41 H 0.10 2.71 7.30 -2.39 -0.02 2.70 16 42 H 0.41 12.33 6.78 -92.71 -0.63 11.70 16 43 H 0.07 1.95 7.46 -2.39 -0.02 1.93 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 47 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.17 372.48 0.36 -64.80 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -1.60 Total: 31.22 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.20 Total: 8.73 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -4.22 Total: -123.23 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -65.17 0.36 -64.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.439 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds