Wall clock time and date at job start Tue Mar 31 2020 18:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47485 * 300.00134 * 3 2 1 6 6 H 1.48507 * 109.46991 * 60.00053 * 3 2 1 7 7 C 1.38813 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99766 * 165.95667 * 7 2 1 9 9 N 1.36943 * 119.99978 * 345.67594 * 7 2 1 10 10 C 1.46928 * 120.63012 * 329.08001 * 9 7 2 11 11 C 1.53188 * 108.77270 * 233.58406 * 10 9 7 12 12 C 1.53048 * 109.31119 * 305.36471 * 11 10 9 13 13 C 1.53035 * 109.53777 * 61.36543 * 12 11 10 14 14 C 1.46926 * 120.62941 * 148.79490 * 9 7 2 15 15 H 1.09001 * 109.58611 * 246.20725 * 14 9 7 16 16 C 1.53004 * 109.58469 * 6.63046 * 14 9 7 17 17 N 1.46502 * 109.47130 * 299.88094 * 16 14 9 18 18 C 1.34779 * 119.99791 * 180.02562 * 17 16 14 19 19 O 1.21589 * 120.00200 * 0.02562 * 18 17 16 20 20 C 1.47524 * 119.99796 * 179.97438 * 18 17 16 21 21 C 1.36591 * 125.76959 * 179.71487 * 20 18 17 22 22 N 1.34817 * 106.83873 * 179.90098 * 21 20 18 23 23 C 1.46501 * 126.59519 * 180.13269 * 22 21 20 24 24 C 1.53001 * 109.47304 * 125.24351 * 23 22 21 25 25 C 1.53006 * 117.49954 * 243.75098 * 24 23 22 26 26 C 1.52996 * 117.49908 * 175.08777 * 24 23 22 27 27 N 1.40208 * 106.81072 * 0.35537 * 22 21 20 28 28 N 1.28764 * 108.36612 * 359.77604 * 27 22 21 29 29 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58465 * 353.37074 * 10 9 7 31 31 H 1.09007 * 109.58567 * 113.65406 * 10 9 7 32 32 H 1.08996 * 109.50311 * 65.31806 * 11 10 9 33 33 H 1.09004 * 109.49966 * 185.38488 * 11 10 9 34 34 H 1.09000 * 109.45899 * 181.38814 * 12 11 10 35 35 H 1.09000 * 109.45973 * 301.35873 * 12 11 10 36 36 H 1.09002 * 109.49924 * 58.58923 * 13 12 11 37 37 H 1.08999 * 109.49737 * 178.64478 * 13 12 11 38 38 H 1.08994 * 109.47065 * 59.88082 * 16 14 9 39 39 H 1.08998 * 109.46759 * 179.88283 * 16 14 9 40 40 H 0.97001 * 119.99842 * 359.97438 * 17 16 14 41 41 H 1.08002 * 126.58112 * 0.04183 * 21 20 18 42 42 H 1.09001 * 109.47264 * 245.24442 * 23 22 21 43 43 H 1.09004 * 109.47170 * 5.24418 * 23 22 21 44 44 H 1.08998 * 115.54626 * 29.41332 * 24 23 22 45 45 H 1.08998 * 117.49369 * 359.97438 * 25 24 23 46 46 H 1.08997 * 117.49641 * 145.01982 * 25 24 23 47 47 H 1.09004 * 117.49730 * 214.97706 * 26 24 23 48 48 H 1.09000 * 117.49993 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0660 -1.2161 -0.2275 9 7 1.3574 -2.3698 0.2924 10 6 0.2151 -2.3773 1.2164 11 6 0.4770 -3.4115 2.3157 12 6 0.7749 -4.7684 1.6735 13 6 2.0299 -4.6588 0.8045 14 6 1.7821 -3.6379 -0.3163 15 1 1.0000 -4.0039 -0.9815 16 6 3.0727 -3.4196 -1.1085 17 7 2.8369 -2.4308 -2.1634 18 6 3.8390 -2.0783 -2.9929 19 8 4.9387 -2.5813 -2.8660 20 6 3.6013 -1.0830 -4.0555 21 6 4.5287 -0.6373 -4.9539 22 7 3.9060 0.2582 -5.7463 23 6 4.5006 1.0008 -6.8603 24 6 3.6740 0.7691 -8.1268 25 6 4.3558 0.0528 -9.2943 26 6 4.0668 1.5536 -9.3802 27 7 2.5811 0.3458 -5.2959 28 7 2.4373 -0.4572 -4.2996 29 1 -0.4850 0.8401 0.0004 30 1 0.1003 -1.3898 1.6634 31 1 -0.6926 -2.6402 0.6731 32 1 1.3314 -3.0971 2.9149 33 1 -0.4032 -3.4957 2.9532 34 1 0.9374 -5.5117 2.4540 35 1 -0.0699 -5.0705 1.0545 36 1 2.8698 -4.3327 1.4179 37 1 2.2552 -5.6312 0.3667 38 1 3.8531 -3.0577 -0.4392 39 1 3.3871 -4.3618 -1.5574 40 1 1.9593 -2.0304 -2.2654 41 1 5.5620 -0.9450 -5.0186 42 1 4.5116 2.0647 -6.6231 43 1 5.5211 0.6546 -7.0242 44 1 2.6136 0.5741 -7.9668 45 1 5.3933 -0.2530 -9.1602 46 1 3.7437 -0.6131 -9.9026 47 1 3.2648 1.8744 -10.0451 48 1 4.9139 2.2352 -9.3025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024733234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:59 Heat of formation + Delta-G solvation = 106.702040 kcal Electronic energy + Delta-G solvation = -29230.079127 eV Core-core repulsion = 25323.689665 eV Total energy + Delta-G solvation = -3906.389462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96015 -38.95735 -38.03598 -37.51696 -34.24063 -33.91539 -32.96021 -31.04056 -30.36310 -29.80570 -28.04741 -25.98554 -24.79237 -23.04550 -22.80330 -22.36148 -22.03980 -21.14010 -20.56920 -19.67712 -19.04431 -17.95173 -16.66130 -16.21363 -15.82877 -15.53699 -15.46368 -15.11694 -14.59450 -14.36092 -14.16608 -13.94043 -13.82791 -13.40283 -13.33877 -13.22866 -12.75810 -12.35452 -12.31639 -11.99568 -11.95644 -11.80684 -11.67495 -11.15048 -11.02908 -10.88943 -10.87476 -10.69254 -10.61320 -10.46593 -10.22102 -10.14675 -10.07073 -9.92198 -9.63909 -9.42272 -9.24943 -9.04962 -8.48299 -8.12510 -6.55640 -5.74391 -3.19745 1.32579 2.08293 2.12590 3.29782 3.40254 3.49780 3.50639 3.76193 3.87397 4.02592 4.34662 4.42428 4.53248 4.55154 4.58121 4.86516 4.99486 5.03122 5.19542 5.25996 5.32538 5.42843 5.43722 5.53121 5.58987 5.65436 5.70254 5.74496 5.75406 6.01814 6.06524 6.14518 6.21135 6.37661 6.41495 6.46997 6.47545 6.64941 6.77549 6.79276 6.92000 7.04659 7.22126 7.45134 7.72539 7.89728 8.12514 8.42278 8.50594 8.88028 9.26419 9.87779 10.45548 11.33027 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003273 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.360381 B = 8553.731900 C = 9601.226618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.016 3.984 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.126 4.126 14 C 0.159 3.841 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.674 5.674 18 C 0.594 3.406 19 O -0.566 6.566 20 C -0.088 4.088 21 C 0.083 3.917 22 N -0.365 5.365 23 C 0.156 3.844 24 C -0.173 4.173 25 C -0.176 4.176 26 C -0.166 4.166 27 N -0.068 5.068 28 N -0.187 5.187 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.424 0.576 41 H 0.201 0.799 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -1.844 -13.487 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.183 4.183 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.052 3.948 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.324 5.324 18 C 0.377 3.623 19 O -0.446 6.446 20 C -0.228 4.228 21 C -0.074 4.074 22 N -0.151 5.151 23 C 0.035 3.965 24 C -0.192 4.192 25 C -0.213 4.213 26 C -0.204 4.204 27 N -0.048 5.048 28 N -0.060 5.060 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.263 0.737 41 H 0.218 0.782 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.251 -1.367 -13.615 15.486 hybrid contribution 0.994 0.875 0.054 1.326 sum 8.245 -0.491 -13.561 15.878 Atomic orbital electron populations 1.70003 1.05099 1.25299 1.53446 1.24994 0.95089 0.97936 1.00331 0.86422 0.79577 0.84860 0.77250 1.20444 1.21582 1.21649 1.19167 0.91989 0.83976 1.43093 0.91331 1.44078 1.36174 1.02015 1.48901 1.20749 0.88523 0.97481 0.88448 1.22191 0.99902 0.96581 0.99605 1.21361 0.97627 0.97350 0.98157 1.22005 0.98166 0.98181 0.98248 1.20828 0.93243 0.88678 0.92072 0.94974 1.21335 0.98518 0.90322 0.88756 1.45871 1.14639 1.41861 1.30001 1.16738 0.84651 0.80500 0.80386 1.90726 1.23987 1.56446 1.73484 1.21629 0.90685 1.06720 1.03741 1.23276 1.00473 0.91794 0.91834 1.50440 1.10497 1.29955 1.24171 1.21503 0.96008 0.97030 0.81991 1.22553 1.01238 1.06782 0.88652 1.23143 1.01670 0.95257 1.01271 1.22995 1.03716 0.94547 0.99145 1.82005 0.93797 1.19512 1.09511 1.74799 1.21737 1.02863 1.06631 0.93711 0.89803 0.96367 0.92852 0.93612 0.93789 0.92890 0.92063 0.93094 0.91357 0.92442 0.73666 0.78247 0.88142 0.87864 0.86071 0.88380 0.88371 0.88118 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 11.24 55.49 0.62 -24.73 16 2 C 0.02 0.44 4.96 -17.43 -0.09 0.36 16 3 Si 0.89 22.39 29.58 -169.99 -5.03 17.37 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.25 -6.57 6.95 -15.06 -0.10 -6.68 16 8 H 0.07 1.84 5.88 -52.49 -0.31 1.53 16 9 N -0.59 -13.87 2.97 -164.52 -0.49 -14.36 16 10 C 0.17 4.02 5.27 -3.71 -0.02 4.00 16 11 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 12 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 13 C -0.13 -2.16 5.40 -26.39 -0.14 -2.30 16 14 C 0.16 3.17 3.03 -67.38 -0.20 2.97 16 15 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 16 C 0.13 2.63 4.44 -4.04 -0.02 2.61 16 17 N -0.67 -14.01 3.84 -61.35 -0.24 -14.25 16 18 C 0.59 12.01 7.82 -12.47 -0.10 11.91 16 19 O -0.57 -12.02 16.86 5.29 0.09 -11.93 16 20 C -0.09 -1.63 6.99 -83.55 -0.58 -2.21 16 21 C 0.08 1.16 11.27 -16.84 -0.19 0.97 16 22 N -0.37 -4.82 3.69 -61.06 -0.23 -5.04 16 23 C 0.16 1.28 6.82 -4.04 -0.03 1.26 16 24 C -0.17 -1.40 5.93 -90.62 -0.54 -1.93 16 25 C -0.18 -1.13 10.18 -26.69 -0.27 -1.40 16 26 C -0.17 -0.98 10.25 -26.69 -0.27 -1.25 16 27 N -0.07 -1.19 13.48 60.35 0.81 -0.38 16 28 N -0.19 -3.74 12.04 32.84 0.40 -3.34 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.08 2.19 6.20 -51.93 -0.32 1.87 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.43 7.42 -51.93 -0.39 1.05 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.42 9.61 7.07 -40.82 -0.29 9.32 16 41 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.54 7.82 -51.93 -0.41 0.13 16 44 H 0.12 1.25 7.94 -51.93 -0.41 0.84 16 45 H 0.10 0.51 8.03 -51.93 -0.42 0.10 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -31.90 388.86 -8.66 -40.57 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.59 Total: 6.77 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.88 Total: 3.47 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.88 Total: -62.10 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.90 -8.66 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024733234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.270 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds