Wall clock time and date at job start Tue Mar 31 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47485 * 300.00134 * 3 2 1 6 6 H 1.48507 * 109.46991 * 60.00053 * 3 2 1 7 7 C 1.38813 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99766 * 165.95667 * 7 2 1 9 9 N 1.36943 * 119.99978 * 345.67594 * 7 2 1 10 10 C 1.46928 * 120.63012 * 329.08001 * 9 7 2 11 11 C 1.53188 * 108.77270 * 233.58406 * 10 9 7 12 12 C 1.53048 * 109.31119 * 305.36471 * 11 10 9 13 13 C 1.53035 * 109.53777 * 61.36543 * 12 11 10 14 14 C 1.46926 * 120.62941 * 148.79490 * 9 7 2 15 15 H 1.09001 * 109.58611 * 246.20725 * 14 9 7 16 16 C 1.53004 * 109.58469 * 6.63046 * 14 9 7 17 17 N 1.46502 * 109.47130 * 299.88094 * 16 14 9 18 18 C 1.34779 * 119.99791 * 180.02562 * 17 16 14 19 19 O 1.21589 * 120.00200 * 0.02562 * 18 17 16 20 20 C 1.47524 * 119.99796 * 179.97438 * 18 17 16 21 21 C 1.36591 * 125.76959 * 179.71487 * 20 18 17 22 22 N 1.34817 * 106.83873 * 179.90098 * 21 20 18 23 23 C 1.46501 * 126.59519 * 180.13269 * 22 21 20 24 24 C 1.53001 * 109.47304 * 125.24351 * 23 22 21 25 25 C 1.53006 * 117.49954 * 243.75098 * 24 23 22 26 26 C 1.52996 * 117.49908 * 175.08777 * 24 23 22 27 27 N 1.40208 * 106.81072 * 0.35537 * 22 21 20 28 28 N 1.28764 * 108.36612 * 359.77604 * 27 22 21 29 29 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58465 * 353.37074 * 10 9 7 31 31 H 1.09007 * 109.58567 * 113.65406 * 10 9 7 32 32 H 1.08996 * 109.50311 * 65.31806 * 11 10 9 33 33 H 1.09004 * 109.49966 * 185.38488 * 11 10 9 34 34 H 1.09000 * 109.45899 * 181.38814 * 12 11 10 35 35 H 1.09000 * 109.45973 * 301.35873 * 12 11 10 36 36 H 1.09002 * 109.49924 * 58.58923 * 13 12 11 37 37 H 1.08999 * 109.49737 * 178.64478 * 13 12 11 38 38 H 1.08994 * 109.47065 * 59.88082 * 16 14 9 39 39 H 1.08998 * 109.46759 * 179.88283 * 16 14 9 40 40 H 0.97001 * 119.99842 * 359.97438 * 17 16 14 41 41 H 1.08002 * 126.58112 * 0.04183 * 21 20 18 42 42 H 1.09001 * 109.47264 * 245.24442 * 23 22 21 43 43 H 1.09004 * 109.47170 * 5.24418 * 23 22 21 44 44 H 1.08998 * 115.54626 * 29.41332 * 24 23 22 45 45 H 1.08998 * 117.49369 * 359.97438 * 25 24 23 46 46 H 1.08997 * 117.49641 * 145.01982 * 25 24 23 47 47 H 1.09004 * 117.49730 * 214.97706 * 26 24 23 48 48 H 1.09000 * 117.49993 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0660 -1.2161 -0.2275 9 7 1.3574 -2.3698 0.2924 10 6 0.2151 -2.3773 1.2164 11 6 0.4770 -3.4115 2.3157 12 6 0.7749 -4.7684 1.6735 13 6 2.0299 -4.6588 0.8045 14 6 1.7821 -3.6379 -0.3163 15 1 1.0000 -4.0039 -0.9815 16 6 3.0727 -3.4196 -1.1085 17 7 2.8369 -2.4308 -2.1634 18 6 3.8390 -2.0783 -2.9929 19 8 4.9387 -2.5813 -2.8660 20 6 3.6013 -1.0830 -4.0555 21 6 4.5287 -0.6373 -4.9539 22 7 3.9060 0.2582 -5.7463 23 6 4.5006 1.0008 -6.8603 24 6 3.6740 0.7691 -8.1268 25 6 4.3558 0.0528 -9.2943 26 6 4.0668 1.5536 -9.3802 27 7 2.5811 0.3458 -5.2959 28 7 2.4373 -0.4572 -4.2996 29 1 -0.4850 0.8401 0.0004 30 1 0.1003 -1.3898 1.6634 31 1 -0.6926 -2.6402 0.6731 32 1 1.3314 -3.0971 2.9149 33 1 -0.4032 -3.4957 2.9532 34 1 0.9374 -5.5117 2.4540 35 1 -0.0699 -5.0705 1.0545 36 1 2.8698 -4.3327 1.4179 37 1 2.2552 -5.6312 0.3667 38 1 3.8531 -3.0577 -0.4392 39 1 3.3871 -4.3618 -1.5574 40 1 1.9593 -2.0304 -2.2654 41 1 5.5620 -0.9450 -5.0186 42 1 4.5116 2.0647 -6.6231 43 1 5.5211 0.6546 -7.0242 44 1 2.6136 0.5741 -7.9668 45 1 5.3933 -0.2530 -9.1602 46 1 3.7437 -0.6131 -9.9026 47 1 3.2648 1.8744 -10.0451 48 1 4.9139 2.2352 -9.3025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024733234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:58 Heat of formation + Delta-G solvation = 86.428581 kcal Electronic energy + Delta-G solvation = -29230.958250 eV Core-core repulsion = 25323.689665 eV Total energy + Delta-G solvation = -3907.268585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.19401 -40.53042 -39.19293 -38.61648 -35.72850 -35.05780 -34.85702 -32.53596 -31.83636 -31.54568 -28.98431 -27.65244 -26.53659 -24.38694 -23.77368 -23.46345 -23.26638 -22.25904 -21.96679 -21.01465 -20.61548 -19.24484 -18.23618 -17.48390 -17.18580 -17.07651 -16.95428 -16.14329 -16.00672 -15.70553 -15.53156 -15.27700 -15.10379 -14.84575 -14.75978 -14.49166 -14.36020 -14.04386 -13.58837 -13.39724 -13.29625 -12.88070 -12.81757 -12.77419 -12.56742 -12.41449 -12.30438 -12.16200 -12.03348 -11.77813 -11.62241 -11.50201 -11.32998 -11.23854 -11.07210 -10.97349 -10.90335 -10.50912 -10.34301 -9.77756 -8.52397 -7.82042 -5.26802 0.17850 0.69720 1.12177 1.34872 1.40119 1.45420 2.27587 2.42111 2.49615 2.78281 3.25711 3.29670 3.36094 3.61762 3.75819 3.87217 3.92025 3.99424 4.03419 4.05412 4.15374 4.25540 4.29863 4.43040 4.46732 4.54976 4.59840 4.68592 4.74096 4.76942 4.86326 4.90819 4.97873 5.03334 5.12941 5.17018 5.21943 5.25712 5.31859 5.40866 5.50173 5.50878 5.61997 5.66099 5.77695 5.87162 6.46375 6.62119 6.98585 7.22385 7.27358 7.91686 8.44179 9.22955 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003273 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.360381 B = 8553.731900 C = 9601.226618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.932 3.068 4 H -0.278 1.278 5 H -0.303 1.303 6 H -0.289 1.289 7 C -0.230 4.230 8 H 0.062 0.938 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.119 4.119 14 C 0.156 3.844 15 H 0.028 0.972 16 C 0.138 3.862 17 N -0.684 5.684 18 C 0.594 3.406 19 O -0.579 6.579 20 C -0.125 4.125 21 C 0.110 3.890 22 N -0.346 5.346 23 C 0.146 3.854 24 C -0.194 4.194 25 C -0.171 4.171 26 C -0.152 4.152 27 N -0.095 5.095 28 N -0.230 5.230 29 H 0.245 0.755 30 H 0.048 0.952 31 H -0.002 1.002 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.413 0.587 41 H 0.243 0.757 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.516 -3.046 -14.437 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.225 4.225 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.231 1.231 6 H -0.216 1.216 7 C -0.361 4.361 8 H 0.079 0.921 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.141 4.141 13 C -0.158 4.158 14 C 0.050 3.950 15 H 0.046 0.954 16 C 0.015 3.985 17 N -0.332 5.332 18 C 0.379 3.621 19 O -0.461 6.461 20 C -0.265 4.265 21 C -0.049 4.049 22 N -0.131 5.131 23 C 0.027 3.973 24 C -0.214 4.214 25 C -0.208 4.208 26 C -0.189 4.189 27 N -0.075 5.075 28 N -0.102 5.102 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.016 0.984 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.250 0.750 41 H 0.259 0.741 42 H 0.130 0.870 43 H 0.163 0.837 44 H 0.108 0.892 45 H 0.135 0.865 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.813 -2.573 -14.581 17.763 hybrid contribution 0.268 1.239 0.205 1.284 sum 10.081 -1.334 -14.376 17.609 Atomic orbital electron populations 1.70109 1.05918 1.24968 1.55868 1.25411 0.95520 0.99807 1.01766 0.85738 0.78734 0.82846 0.76411 1.20293 1.23068 1.21564 1.19178 0.91582 0.84846 1.40474 0.92081 1.44281 1.35979 1.02725 1.49562 1.20577 0.87781 0.97113 0.89324 1.22034 1.00503 0.96583 0.98141 1.21352 0.97428 0.96400 0.98875 1.21944 0.98268 0.98551 0.97073 1.21026 0.93145 0.87706 0.93123 0.95389 1.21362 0.97714 0.91031 0.88410 1.45957 1.14304 1.42320 1.30646 1.16966 0.84185 0.80481 0.80462 1.90695 1.24133 1.57155 1.74085 1.21659 0.91778 1.07932 1.05145 1.23834 1.01212 0.90042 0.89763 1.50777 1.09062 1.29013 1.24234 1.22074 0.97605 0.97388 0.80225 1.22409 0.99783 1.09586 0.89583 1.23250 1.02312 0.95587 0.99642 1.23104 1.04132 0.94716 0.96954 1.81894 0.96347 1.19770 1.09529 1.74770 1.23315 1.04152 1.07998 0.94512 0.93351 0.98426 0.93370 0.91807 0.90511 0.92651 0.92418 0.89757 0.92900 0.90059 0.75002 0.74056 0.86976 0.83659 0.89242 0.86459 0.88919 0.88177 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 11.24 21.65 0.24 -54.29 16 2 C -0.03 -1.60 4.96 84.86 0.42 -1.18 16 3 Si 0.93 47.50 29.58 68.60 2.03 49.53 16 4 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 6 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 7 C -0.23 -12.25 6.95 84.03 0.58 -11.67 16 8 H 0.06 3.34 5.88 -2.91 -0.02 3.32 16 9 N -0.60 -28.77 2.97 -674.41 -2.00 -30.77 16 10 C 0.18 8.39 5.27 86.36 0.45 8.84 16 11 C -0.13 -4.88 6.08 30.67 0.19 -4.70 16 12 C -0.10 -3.14 5.88 30.62 0.18 -2.96 16 13 C -0.12 -3.74 5.40 30.81 0.17 -3.58 16 14 C 0.16 6.12 3.03 45.12 0.14 6.25 16 15 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 16 C 0.14 5.33 4.44 86.38 0.38 5.71 16 17 N -0.68 -28.89 3.84 -466.28 -1.79 -30.68 16 18 C 0.59 24.06 7.82 86.69 0.68 24.74 16 19 O -0.58 -24.05 16.86 -4.00 -0.07 -24.12 16 20 C -0.12 -4.60 6.99 40.82 0.29 -4.32 16 21 C 0.11 2.86 11.27 83.85 0.95 3.81 16 22 N -0.35 -8.63 3.69 -347.09 -1.28 -9.91 16 23 C 0.15 1.99 6.82 86.38 0.59 2.58 16 24 C -0.19 -2.83 5.93 -10.79 -0.06 -2.90 16 25 C -0.17 -1.75 10.18 30.62 0.31 -1.44 16 26 C -0.15 -1.40 10.25 30.62 0.31 -1.09 16 27 N -0.10 -3.40 13.48 37.02 0.50 -2.91 16 28 N -0.23 -9.49 12.04 -50.00 -0.60 -10.09 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.05 2.62 6.20 -2.39 -0.01 2.60 16 31 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 2.19 7.42 -2.39 -0.02 2.18 16 39 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.41 19.45 7.07 -92.71 -0.66 18.80 16 41 H 0.24 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.15 0.80 7.82 -2.39 -0.02 0.78 16 44 H 0.09 1.91 7.94 -2.39 -0.02 1.89 16 45 H 0.12 0.76 8.03 -2.39 -0.02 0.74 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -73.45 388.86 2.91 -70.53 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.31 Total: 24.59 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 5.57 Total: 18.11 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -4.93 Total: -138.64 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -73.45 2.91 -70.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024733234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.963 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds