Wall clock time and date at job start Tue Mar 31 2020 18:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48507 * 109.47291 * 270.00341 * 3 2 1 5 5 H 1.48503 * 109.47132 * 30.00168 * 3 2 1 6 6 H 1.48503 * 109.47642 * 150.00237 * 3 2 1 7 7 C 1.38814 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99843 * 193.81595 * 7 2 1 9 9 N 1.36930 * 120.00023 * 13.82137 * 7 2 1 10 10 C 1.46927 * 120.63226 * 31.18099 * 9 7 2 11 11 C 1.53188 * 108.77745 * 126.37246 * 10 9 7 12 12 C 1.53035 * 109.31262 * 54.63364 * 11 10 9 13 13 C 1.53037 * 109.54016 * 298.63729 * 12 11 10 14 14 C 1.46928 * 120.62838 * 211.15946 * 9 7 2 15 15 H 1.09006 * 109.58703 * 113.70113 * 14 9 7 16 16 C 1.52994 * 109.58852 * 353.41471 * 14 9 7 17 17 N 1.46495 * 109.47147 * 60.22539 * 16 14 9 18 18 C 1.34780 * 120.00289 * 179.97438 * 17 16 14 19 19 O 1.21598 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.47518 * 120.00282 * 179.97438 * 18 17 16 21 21 C 1.36594 * 125.77393 * 180.02562 * 20 18 17 22 22 N 1.34813 * 106.84260 * 180.02562 * 21 20 18 23 23 C 1.46496 * 126.59314 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47220 * 125.00084 * 23 22 21 25 25 C 1.53004 * 117.49875 * 243.62321 * 24 23 22 26 26 C 1.53006 * 117.50402 * 174.99814 * 24 23 22 27 27 N 1.40210 * 106.80909 * 0.02562 * 22 21 20 28 28 N 1.28760 * 108.37066 * 359.97438 * 27 22 21 29 29 H 0.97003 * 119.99912 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58264 * 246.16056 * 10 9 7 31 31 H 1.08997 * 109.58595 * 6.43415 * 10 9 7 32 32 H 1.09001 * 109.49450 * 174.58531 * 11 10 9 33 33 H 1.08997 * 109.49616 * 294.68356 * 11 10 9 34 34 H 1.09001 * 109.46221 * 58.65867 * 12 11 10 35 35 H 1.09003 * 109.46269 * 178.62638 * 12 11 10 36 36 H 1.09005 * 109.49492 * 301.41439 * 13 12 11 37 37 H 1.09003 * 109.49825 * 181.32112 * 13 12 11 38 38 H 1.08996 * 109.46961 * 300.22620 * 16 14 9 39 39 H 1.09001 * 109.46970 * 180.22526 * 16 14 9 40 40 H 0.97007 * 120.00239 * 0.02562 * 17 16 14 41 41 H 1.08005 * 126.57545 * 359.97438 * 21 20 18 42 42 H 1.09008 * 109.47348 * 244.99629 * 23 22 21 43 43 H 1.09002 * 109.47622 * 4.99708 * 23 22 21 44 44 H 1.09002 * 115.55401 * 29.32552 * 24 23 22 45 45 H 1.08991 * 117.50138 * 359.97438 * 25 24 23 46 46 H 1.09004 * 117.49829 * 145.02319 * 25 24 23 47 47 H 1.08995 * 117.50347 * 214.97897 * 26 24 23 48 48 H 1.09005 * 117.49347 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0668 -1.2155 0.2239 9 7 1.3553 -2.3710 -0.2822 10 6 0.2096 -2.3835 -1.2019 11 6 0.4669 -3.4244 -2.2960 12 6 0.7667 -4.7774 -1.6470 13 6 2.0250 -4.6633 -0.7834 14 6 1.7854 -3.6365 0.3279 15 1 1.0096 -3.9992 1.0023 16 6 3.0818 -3.4146 1.1095 17 7 2.8528 -2.4239 2.1640 18 6 3.8608 -2.0680 2.9849 19 8 4.9605 -2.5691 2.8498 20 6 3.6303 -1.0699 4.0464 21 6 4.5628 -0.6244 4.9396 22 7 3.9461 0.2754 5.7319 23 6 4.5483 1.0210 6.8398 24 6 4.3367 2.5203 6.6202 25 6 5.5813 3.3880 6.4227 26 6 4.7924 3.4684 7.7312 27 7 2.6174 0.3593 5.2923 28 7 2.4670 -0.4459 4.2989 29 1 -0.4850 0.8401 0.0004 30 1 -0.6958 -2.6453 -0.6541 31 1 0.0918 -1.3980 -1.6524 32 1 -0.4159 -3.5123 -2.9293 33 1 1.3192 -3.1139 -2.9003 34 1 -0.0760 -5.0757 -1.0232 35 1 0.9262 -5.5255 -2.4237 36 1 2.8627 -4.3411 -1.4019 37 1 2.2512 -5.6331 -0.3401 38 1 3.8563 -3.0530 0.4333 39 1 3.4012 -4.3554 1.5580 40 1 1.9754 -2.0244 2.2721 41 1 5.5957 -0.9342 5.0001 42 1 4.0791 0.7214 7.7770 43 1 5.6163 0.8074 6.8836 44 1 3.4400 2.7919 6.0631 45 1 6.5509 2.8908 6.4497 46 1 5.5036 4.2306 5.7356 47 1 4.1957 4.3639 7.9049 48 1 5.2426 3.0240 8.6189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024733235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:02 Heat of formation + Delta-G solvation = 106.553936 kcal Electronic energy + Delta-G solvation = -29318.942701 eV Core-core repulsion = 25412.546817 eV Total energy + Delta-G solvation = -3906.395885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95938 -38.96038 -38.01140 -37.52776 -34.23880 -33.91318 -32.96800 -31.04474 -30.36662 -29.81491 -28.04209 -25.98215 -24.79560 -23.03538 -22.76632 -22.35735 -22.04272 -21.12632 -20.57239 -19.67556 -19.03837 -17.94657 -16.66168 -16.15244 -15.91302 -15.51223 -15.42010 -15.14505 -14.54640 -14.38764 -14.16512 -13.94338 -13.78168 -13.45035 -13.36683 -13.18845 -12.74182 -12.38903 -12.26776 -11.96273 -11.95436 -11.80568 -11.67587 -11.16180 -11.00081 -10.87826 -10.86170 -10.71199 -10.58486 -10.46733 -10.22140 -10.13926 -10.06773 -9.92166 -9.64000 -9.42031 -9.26049 -9.04798 -8.48317 -8.12494 -6.55812 -5.74283 -3.19829 1.32324 2.09049 2.12250 3.33405 3.40857 3.48699 3.49806 3.75255 3.89513 4.03400 4.37430 4.44280 4.53176 4.57028 4.60477 4.88026 4.99637 5.03237 5.23083 5.26080 5.32290 5.42967 5.48484 5.53713 5.58445 5.69760 5.70221 5.74893 5.79520 6.01680 6.06442 6.14614 6.21224 6.37926 6.41415 6.47030 6.47716 6.64902 6.77519 6.79264 6.92019 7.04570 7.22198 7.45188 7.72894 7.89284 8.12368 8.42163 8.50635 8.88006 9.26531 9.87720 10.45490 11.33259 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.003450 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.069943 B = 8113.109095 C = 9292.155516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.016 3.984 3 Si 0.892 3.108 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.126 4.126 14 C 0.159 3.841 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.674 5.674 18 C 0.594 3.406 19 O -0.566 6.566 20 C -0.088 4.088 21 C 0.083 3.917 22 N -0.366 5.366 23 C 0.157 3.843 24 C -0.176 4.176 25 C -0.176 4.176 26 C -0.166 4.166 27 N -0.068 5.068 28 N -0.187 5.187 29 H 0.253 0.747 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.424 0.576 41 H 0.201 0.799 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -0.238 12.129 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.183 4.183 3 Si 0.722 3.278 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.052 3.948 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.324 5.324 18 C 0.377 3.623 19 O -0.447 6.447 20 C -0.227 4.227 21 C -0.074 4.074 22 N -0.151 5.151 23 C 0.036 3.964 24 C -0.195 4.195 25 C -0.213 4.213 26 C -0.203 4.203 27 N -0.049 5.049 28 N -0.061 5.061 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.263 0.737 41 H 0.217 0.783 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.884 0.232 12.280 14.595 hybrid contribution 1.023 0.892 -0.094 1.361 sum 8.907 1.124 12.186 15.136 Atomic orbital electron populations 1.69985 1.05094 1.25406 1.53418 1.24994 0.95097 0.97926 1.00319 0.86448 0.79375 0.84530 0.77440 1.21604 1.21743 1.20634 1.19136 0.91886 0.83918 1.43314 0.91353 1.44053 1.35751 1.02080 1.49261 1.20754 0.88488 0.97419 0.88545 1.22192 0.99888 0.96618 0.99611 1.21359 0.97597 0.97357 0.98176 1.21934 0.98181 0.98184 0.98320 1.20738 0.93205 0.88674 0.92166 0.95000 1.21342 0.98513 0.90285 0.88818 1.45864 1.14405 1.41765 1.30328 1.16738 0.84656 0.80473 0.80388 1.90727 1.24100 1.56612 1.73221 1.21624 0.90669 1.06748 1.03672 1.23274 1.00470 0.92010 0.91621 1.50440 1.10248 1.29521 1.24863 1.21492 0.98529 0.89442 0.86926 1.22571 1.00899 0.90795 1.05189 1.23135 0.95374 1.02702 1.00126 1.22978 1.03481 1.01173 0.92693 1.81996 0.93489 1.19433 1.09935 1.74794 1.21918 1.02870 1.06483 0.93654 0.96389 0.89748 0.93608 0.92862 0.92880 0.93786 0.92073 0.93051 0.91371 0.92438 0.73682 0.78257 0.88135 0.87899 0.86051 0.88358 0.88327 0.88129 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.23 55.49 0.62 -24.76 16 2 C 0.02 0.45 4.97 -17.43 -0.09 0.36 16 3 Si 0.89 22.48 29.58 -169.99 -5.03 17.45 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.25 -6.58 6.97 -15.06 -0.10 -6.69 16 8 H 0.07 1.83 5.86 -52.49 -0.31 1.52 16 9 N -0.59 -13.88 2.97 -164.78 -0.49 -14.37 16 10 C 0.17 4.02 5.27 -3.71 -0.02 4.00 16 11 C -0.14 -2.73 6.08 -26.62 -0.16 -2.89 16 12 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 13 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 14 C 0.16 3.18 3.01 -67.60 -0.20 2.97 16 15 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 16 C 0.13 2.62 4.43 -4.05 -0.02 2.60 16 17 N -0.67 -14.03 3.84 -61.36 -0.24 -14.27 16 18 C 0.59 12.05 7.82 -12.48 -0.10 11.95 16 19 O -0.57 -12.06 16.86 5.28 0.09 -11.97 16 20 C -0.09 -1.62 6.99 -83.55 -0.58 -2.21 16 21 C 0.08 1.17 11.27 -16.84 -0.19 0.98 16 22 N -0.37 -4.82 3.69 -61.06 -0.23 -5.05 16 23 C 0.16 1.29 6.82 -4.05 -0.03 1.27 16 24 C -0.18 -1.56 5.93 -90.62 -0.54 -2.09 16 25 C -0.18 -1.32 10.18 -26.73 -0.27 -1.59 16 26 C -0.17 -1.06 10.25 -26.72 -0.27 -1.34 16 27 N -0.07 -1.19 13.48 60.35 0.81 -0.38 16 28 N -0.19 -3.74 12.04 32.85 0.40 -3.34 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 2.21 6.19 -51.93 -0.32 1.89 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.43 7.42 -51.93 -0.39 1.04 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.42 9.61 7.08 -40.82 -0.29 9.32 16 41 H 0.20 2.08 8.06 -52.48 -0.42 1.66 16 42 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.10 0.54 7.82 -51.93 -0.41 0.14 16 44 H 0.12 1.41 7.94 -51.93 -0.41 0.99 16 45 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -31.90 388.81 -8.67 -40.57 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.59 Total: 7.17 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.88 Total: 3.08 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.88 Total: -62.16 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.90 -8.67 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024733235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.123 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds