Wall clock time and date at job start Tue Mar 31 2020 18:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48507 * 109.47291 * 270.00341 * 3 2 1 5 5 H 1.48503 * 109.47132 * 30.00168 * 3 2 1 6 6 H 1.48503 * 109.47642 * 150.00237 * 3 2 1 7 7 C 1.38814 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99843 * 193.81595 * 7 2 1 9 9 N 1.36930 * 120.00023 * 13.82137 * 7 2 1 10 10 C 1.46927 * 120.63226 * 31.18099 * 9 7 2 11 11 C 1.53188 * 108.77745 * 126.37246 * 10 9 7 12 12 C 1.53035 * 109.31262 * 54.63364 * 11 10 9 13 13 C 1.53037 * 109.54016 * 298.63729 * 12 11 10 14 14 C 1.46928 * 120.62838 * 211.15946 * 9 7 2 15 15 H 1.09006 * 109.58703 * 113.70113 * 14 9 7 16 16 C 1.52994 * 109.58852 * 353.41471 * 14 9 7 17 17 N 1.46495 * 109.47147 * 60.22539 * 16 14 9 18 18 C 1.34780 * 120.00289 * 179.97438 * 17 16 14 19 19 O 1.21598 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.47518 * 120.00282 * 179.97438 * 18 17 16 21 21 C 1.36594 * 125.77393 * 180.02562 * 20 18 17 22 22 N 1.34813 * 106.84260 * 180.02562 * 21 20 18 23 23 C 1.46496 * 126.59314 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47220 * 125.00084 * 23 22 21 25 25 C 1.53004 * 117.49875 * 243.62321 * 24 23 22 26 26 C 1.53006 * 117.50402 * 174.99814 * 24 23 22 27 27 N 1.40210 * 106.80909 * 0.02562 * 22 21 20 28 28 N 1.28760 * 108.37066 * 359.97438 * 27 22 21 29 29 H 0.97003 * 119.99912 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58264 * 246.16056 * 10 9 7 31 31 H 1.08997 * 109.58595 * 6.43415 * 10 9 7 32 32 H 1.09001 * 109.49450 * 174.58531 * 11 10 9 33 33 H 1.08997 * 109.49616 * 294.68356 * 11 10 9 34 34 H 1.09001 * 109.46221 * 58.65867 * 12 11 10 35 35 H 1.09003 * 109.46269 * 178.62638 * 12 11 10 36 36 H 1.09005 * 109.49492 * 301.41439 * 13 12 11 37 37 H 1.09003 * 109.49825 * 181.32112 * 13 12 11 38 38 H 1.08996 * 109.46961 * 300.22620 * 16 14 9 39 39 H 1.09001 * 109.46970 * 180.22526 * 16 14 9 40 40 H 0.97007 * 120.00239 * 0.02562 * 17 16 14 41 41 H 1.08005 * 126.57545 * 359.97438 * 21 20 18 42 42 H 1.09008 * 109.47348 * 244.99629 * 23 22 21 43 43 H 1.09002 * 109.47622 * 4.99708 * 23 22 21 44 44 H 1.09002 * 115.55401 * 29.32552 * 24 23 22 45 45 H 1.08991 * 117.50138 * 359.97438 * 25 24 23 46 46 H 1.09004 * 117.49829 * 145.02319 * 25 24 23 47 47 H 1.08995 * 117.50347 * 214.97897 * 26 24 23 48 48 H 1.09005 * 117.49347 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0668 -1.2155 0.2239 9 7 1.3553 -2.3710 -0.2822 10 6 0.2096 -2.3835 -1.2019 11 6 0.4669 -3.4244 -2.2960 12 6 0.7667 -4.7774 -1.6470 13 6 2.0250 -4.6633 -0.7834 14 6 1.7854 -3.6365 0.3279 15 1 1.0096 -3.9992 1.0023 16 6 3.0818 -3.4146 1.1095 17 7 2.8528 -2.4239 2.1640 18 6 3.8608 -2.0680 2.9849 19 8 4.9605 -2.5691 2.8498 20 6 3.6303 -1.0699 4.0464 21 6 4.5628 -0.6244 4.9396 22 7 3.9461 0.2754 5.7319 23 6 4.5483 1.0210 6.8398 24 6 4.3367 2.5203 6.6202 25 6 5.5813 3.3880 6.4227 26 6 4.7924 3.4684 7.7312 27 7 2.6174 0.3593 5.2923 28 7 2.4670 -0.4459 4.2989 29 1 -0.4850 0.8401 0.0004 30 1 -0.6958 -2.6453 -0.6541 31 1 0.0918 -1.3980 -1.6524 32 1 -0.4159 -3.5123 -2.9293 33 1 1.3192 -3.1139 -2.9003 34 1 -0.0760 -5.0757 -1.0232 35 1 0.9262 -5.5255 -2.4237 36 1 2.8627 -4.3411 -1.4019 37 1 2.2512 -5.6331 -0.3401 38 1 3.8563 -3.0530 0.4333 39 1 3.4012 -4.3554 1.5580 40 1 1.9754 -2.0244 2.2721 41 1 5.5957 -0.9342 5.0001 42 1 4.0791 0.7214 7.7770 43 1 5.6163 0.8074 6.8836 44 1 3.4400 2.7919 6.0631 45 1 6.5509 2.8908 6.4497 46 1 5.5036 4.2306 5.7356 47 1 4.1957 4.3639 7.9049 48 1 5.2426 3.0240 8.6189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024733235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:01 Heat of formation + Delta-G solvation = 86.185695 kcal Electronic energy + Delta-G solvation = -29319.825935 eV Core-core repulsion = 25412.546817 eV Total energy + Delta-G solvation = -3907.279118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.19282 -40.53716 -39.20693 -38.63782 -35.73061 -35.06296 -34.87011 -32.54224 -31.83892 -31.56022 -28.98692 -27.65179 -26.54146 -24.38998 -23.78117 -23.47144 -23.28553 -22.26476 -21.98022 -21.02378 -20.61209 -19.24804 -18.23987 -17.44137 -17.31154 -17.01813 -16.93859 -16.18198 -16.01252 -15.74105 -15.44143 -15.35238 -15.10580 -14.82767 -14.77227 -14.54322 -14.31106 -14.05201 -13.59667 -13.41483 -13.27685 -12.87128 -12.83651 -12.79727 -12.58313 -12.43651 -12.31630 -12.16107 -12.05764 -11.77290 -11.65025 -11.50119 -11.34148 -11.24632 -11.07386 -10.98466 -10.91083 -10.50900 -10.34292 -9.77910 -8.52887 -7.82725 -5.27410 0.17562 0.69617 1.12675 1.34660 1.38485 1.42910 2.26905 2.42658 2.48576 2.76061 3.25085 3.28953 3.35440 3.61430 3.75143 3.86616 3.90324 3.99235 4.02699 4.04536 4.14164 4.25607 4.30122 4.42644 4.46459 4.54510 4.59719 4.68570 4.73737 4.74546 4.86337 4.90764 4.95306 5.03317 5.10496 5.17030 5.19639 5.25547 5.31704 5.40841 5.49975 5.50928 5.61907 5.65883 5.76944 5.87233 6.45746 6.61850 6.98457 7.21975 7.27124 7.91243 8.43608 9.22319 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.003450 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.069943 B = 8113.109095 C = 9292.155516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.933 3.067 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.119 4.119 14 C 0.156 3.844 15 H 0.029 0.971 16 C 0.138 3.862 17 N -0.684 5.684 18 C 0.594 3.406 19 O -0.580 6.580 20 C -0.125 4.125 21 C 0.109 3.891 22 N -0.346 5.346 23 C 0.148 3.852 24 C -0.199 4.199 25 C -0.179 4.179 26 C -0.144 4.144 27 N -0.094 5.094 28 N -0.230 5.230 29 H 0.246 0.754 30 H -0.002 1.002 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.413 0.587 41 H 0.243 0.757 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.070 -1.710 13.387 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.225 4.225 3 Si 0.765 3.235 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.079 0.921 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.159 4.159 14 C 0.051 3.949 15 H 0.046 0.954 16 C 0.014 3.986 17 N -0.332 5.332 18 C 0.379 3.621 19 O -0.461 6.461 20 C -0.265 4.265 21 C -0.049 4.049 22 N -0.131 5.131 23 C 0.030 3.970 24 C -0.218 4.218 25 C -0.216 4.216 26 C -0.182 4.182 27 N -0.075 5.075 28 N -0.102 5.102 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.250 0.750 41 H 0.259 0.741 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.102 0.898 45 H 0.137 0.863 46 H 0.104 0.896 47 H 0.117 0.883 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.357 -1.241 13.552 17.101 hybrid contribution 0.334 1.374 -0.368 1.461 sum 10.691 0.133 13.184 16.974 Atomic orbital electron populations 1.70092 1.05877 1.25017 1.55871 1.25400 0.95517 0.99747 1.01788 0.85782 0.78081 0.82535 0.77134 1.21245 1.22881 1.21130 1.19146 0.91482 0.84792 1.40649 0.92106 1.44258 1.35559 1.02788 1.49935 1.20583 0.87750 0.97082 0.89402 1.22035 1.00493 0.96599 0.98166 1.21350 0.97400 0.96412 0.98881 1.21876 0.98285 0.98536 0.97173 1.20936 0.93107 0.87709 0.93193 0.95372 1.21372 0.97720 0.90999 0.88460 1.45952 1.14072 1.42227 1.30966 1.16974 0.84194 0.80464 0.80479 1.90696 1.24244 1.57333 1.73837 1.21658 0.91815 1.07958 1.05104 1.23831 1.01176 0.90346 0.89529 1.50782 1.08837 1.28616 1.24872 1.22077 1.00818 0.88305 0.85825 1.22453 1.00324 0.91782 1.07210 1.23241 0.95653 1.02027 1.00641 1.23088 1.02121 1.00086 0.92876 1.81885 0.96022 1.19569 1.09992 1.74764 1.23481 1.04113 1.07883 0.94500 0.98416 0.93304 0.91795 0.93407 0.92621 0.90502 0.92440 0.89684 0.92945 0.90011 0.75009 0.74083 0.86057 0.83701 0.89780 0.86306 0.89612 0.88311 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 11.23 21.65 0.24 -54.41 16 2 C -0.03 -1.58 4.97 84.86 0.42 -1.15 16 3 Si 0.93 47.88 29.58 68.60 2.03 49.91 16 4 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 5 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 6 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 7 C -0.23 -12.27 6.97 84.04 0.59 -11.69 16 8 H 0.06 3.34 5.86 -2.91 -0.02 3.32 16 9 N -0.60 -28.80 2.97 -675.23 -2.01 -30.81 16 10 C 0.18 8.39 5.27 86.36 0.46 8.84 16 11 C -0.13 -4.90 6.08 30.67 0.19 -4.71 16 12 C -0.10 -3.13 5.88 30.62 0.18 -2.95 16 13 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 14 C 0.16 6.14 3.01 44.97 0.14 6.27 16 15 H 0.03 1.15 8.14 -2.38 -0.02 1.14 16 16 C 0.14 5.31 4.43 86.38 0.38 5.70 16 17 N -0.68 -28.93 3.84 -466.30 -1.79 -30.72 16 18 C 0.59 24.15 7.82 86.69 0.68 24.82 16 19 O -0.58 -24.16 16.86 -4.02 -0.07 -24.23 16 20 C -0.13 -4.63 6.99 40.81 0.29 -4.34 16 21 C 0.11 2.86 11.27 83.85 0.95 3.81 16 22 N -0.35 -8.59 3.69 -347.10 -1.28 -9.87 16 23 C 0.15 1.98 6.82 86.38 0.59 2.57 16 24 C -0.20 -3.23 5.93 -10.79 -0.06 -3.29 16 25 C -0.18 -2.30 10.18 30.60 0.31 -1.98 16 26 C -0.14 -1.48 10.25 30.60 0.31 -1.17 16 27 N -0.09 -3.36 13.48 37.02 0.50 -2.86 16 28 N -0.23 -9.47 12.04 -50.00 -0.60 -10.07 16 29 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.05 2.65 6.19 -2.39 -0.01 2.63 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 2.18 7.42 -2.39 -0.02 2.16 16 39 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.41 19.45 7.08 -92.70 -0.66 18.80 16 41 H 0.24 4.05 8.06 -2.91 -0.02 4.02 16 42 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.15 0.78 7.82 -2.39 -0.02 0.76 16 44 H 0.08 2.03 7.94 -2.39 -0.02 2.01 16 45 H 0.12 1.03 8.03 -2.39 -0.02 1.01 16 46 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -73.93 388.81 2.91 -71.03 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.31 Total: 24.91 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 5.57 Total: 17.13 kcal Atomic # 7 Polarization: -133.82 SS G_CDS: -4.94 Total: -138.75 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -73.93 2.91 -71.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024733235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.215 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds