Wall clock time and date at job start Tue Mar 31 2020 18:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48489 * 109.47245 * 269.99751 * 3 2 1 5 5 H 1.48501 * 109.47085 * 30.00307 * 3 2 1 6 6 H 1.48503 * 109.46733 * 149.99891 * 3 2 1 7 7 C 1.38811 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00292 * 165.41834 * 7 2 1 9 9 N 1.36941 * 119.99561 * 345.41267 * 7 2 1 10 10 C 1.46919 * 120.63665 * 328.32823 * 9 7 2 11 11 C 1.53167 * 108.77023 * 233.63017 * 10 9 7 12 12 C 1.53042 * 109.32322 * 305.35362 * 11 10 9 13 13 C 1.53040 * 109.52461 * 61.37532 * 12 11 10 14 14 C 1.46936 * 120.62392 * 148.34696 * 9 7 2 15 15 H 1.08999 * 109.58579 * 246.15539 * 14 9 7 16 16 C 1.52998 * 109.70660 * 6.51681 * 14 9 7 17 17 N 1.46501 * 109.46929 * 299.29493 * 16 14 9 18 18 C 1.34779 * 120.00028 * 180.02562 * 17 16 14 19 19 O 1.21285 * 119.99665 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00227 * 179.97438 * 18 17 16 21 21 H 1.08998 * 109.45531 * 59.96002 * 20 18 17 22 22 C 1.53103 * 109.45554 * 179.91155 * 20 18 17 23 23 C 1.53422 * 109.57964 * 190.07849 * 22 20 18 24 24 C 1.50599 * 108.33376 * 310.17290 * 23 22 20 25 25 N 1.32908 * 129.16254 * 196.58331 * 24 23 22 26 26 N 1.29026 * 108.63175 * 179.86979 * 25 24 23 27 27 N 1.29105 * 110.25878 * 0.02562 * 26 25 24 28 28 H 0.97007 * 126.00281 * 180.09283 * 27 26 25 29 29 C 1.34395 * 107.98642 * 0.06464 * 27 26 25 30 30 C 1.50535 * 129.25251 * 179.86639 * 29 27 26 31 31 H 0.96996 * 120.00337 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58875 * 353.42088 * 10 9 7 33 33 H 1.09006 * 109.58471 * 113.69555 * 10 9 7 34 34 H 1.08996 * 109.47766 * 185.40926 * 11 10 9 35 35 H 1.08994 * 109.49572 * 65.31879 * 11 10 9 36 36 H 1.08995 * 109.46020 * 301.35292 * 12 11 10 37 37 H 1.09000 * 109.45453 * 181.38225 * 12 11 10 38 38 H 1.08995 * 109.50056 * 58.59048 * 13 12 11 39 39 H 1.09001 * 109.49513 * 178.68620 * 13 12 11 40 40 H 1.09006 * 109.47067 * 59.28913 * 16 14 9 41 41 H 1.08990 * 109.47315 * 179.28895 * 16 14 9 42 42 H 0.97000 * 119.99828 * 359.97438 * 17 16 14 43 43 H 1.09000 * 109.45090 * 310.10663 * 22 20 18 44 44 H 1.08994 * 109.45408 * 70.04322 * 22 20 18 45 45 H 1.08998 * 109.68973 * 190.46022 * 23 22 20 46 46 H 1.08999 * 109.72642 * 69.90117 * 23 22 20 47 47 H 1.08996 * 109.69394 * 76.76768 * 30 29 27 48 48 H 1.09002 * 109.72410 * 316.20593 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0642 -1.2173 -0.2349 9 7 1.3587 -2.3688 0.2998 10 6 0.2305 -2.3761 1.2409 11 6 0.5068 -3.4135 2.3334 12 6 0.7917 -4.7695 1.6837 13 6 2.0337 -4.6606 0.7962 14 6 1.7749 -3.6372 -0.3141 15 1 0.9849 -4.0021 -0.9704 16 6 3.0558 -3.4231 -1.1230 17 7 2.8051 -2.4453 -2.1847 18 6 3.7967 -2.0980 -3.0289 19 8 4.8967 -2.5948 -2.9093 20 6 3.5387 -1.0926 -4.1215 21 1 3.2260 -0.1471 -3.6783 22 6 4.8211 -0.8774 -4.9296 23 6 4.6393 0.3184 -5.8735 24 6 3.3478 0.1357 -6.6263 25 7 2.9293 0.7394 -7.7339 26 7 1.7619 0.2811 -8.0372 27 7 1.3903 -0.6030 -7.1729 28 1 0.5533 -1.0932 -7.1824 29 6 2.3672 -0.7251 -6.2580 30 6 2.4305 -1.6146 -5.0452 31 1 -0.4850 0.8400 0.0004 32 1 0.1246 -1.3895 1.6920 33 1 -0.6859 -2.6356 0.7107 34 1 -0.3641 -3.4974 2.9834 35 1 1.3709 -3.1024 2.9203 36 1 -0.0631 -5.0683 1.0771 37 1 0.9644 -5.5149 2.4600 38 1 2.8835 -4.3378 1.3976 39 1 2.2499 -5.6322 0.3521 40 1 3.8427 -3.0524 -0.4661 41 1 3.3680 -4.3687 -1.5661 42 1 1.9252 -2.0483 -2.2806 43 1 5.6499 -0.6803 -4.2497 44 1 5.0362 -1.7718 -5.5142 45 1 5.4713 0.3612 -6.5764 46 1 4.5997 1.2412 -5.2948 47 1 2.6580 -2.6360 -5.3502 48 1 1.4746 -1.5918 -4.5219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024756676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:58 Heat of formation + Delta-G solvation = 60.101476 kcal Electronic energy + Delta-G solvation = -30048.986406 eV Core-core repulsion = 26140.576192 eV Total energy + Delta-G solvation = -3908.410214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.49400 -39.69395 -37.96038 -36.42510 -34.27683 -33.90885 -33.14274 -31.19409 -30.30586 -30.10597 -29.88534 -26.19719 -25.10040 -24.33010 -23.06187 -22.75759 -22.21485 -20.84532 -20.27185 -19.37227 -19.06259 -18.23452 -17.01202 -16.40635 -16.04556 -15.72650 -15.37546 -15.15908 -14.21569 -14.08820 -14.03733 -13.95529 -13.68864 -13.55314 -13.46331 -13.28827 -12.89599 -12.53109 -12.21385 -12.17108 -11.93192 -11.73446 -11.61173 -11.25514 -11.18964 -11.07011 -10.99172 -10.82901 -10.64062 -10.59794 -10.36940 -10.34702 -10.22709 -10.07266 -9.63419 -9.51056 -9.25934 -8.94011 -8.66592 -8.31240 -6.74123 -5.93337 -3.39943 1.47127 2.46235 2.58595 3.09774 3.24990 3.35566 3.38765 3.69326 4.17315 4.35133 4.49062 4.69506 4.81263 4.90843 5.13897 5.15959 5.23786 5.29785 5.32470 5.39897 5.44157 5.56108 5.60202 5.61972 5.70630 5.81187 5.90029 5.96637 5.99621 6.05807 6.07926 6.20175 6.24529 6.29577 6.32749 6.34979 6.52734 6.63473 6.66409 6.74547 6.78412 6.90260 7.09179 7.29493 7.55492 7.70722 8.15867 8.32010 8.37834 8.76034 9.07270 9.69060 10.27691 11.13339 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003856 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.643598 B = 7260.090736 C = 7961.008196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.010 3.990 3 Si 0.889 3.111 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.161 3.839 15 H 0.030 0.970 16 C 0.134 3.866 17 N -0.692 5.692 18 C 0.515 3.485 19 O -0.558 6.558 20 C -0.103 4.103 21 H 0.107 0.893 22 C -0.098 4.098 23 C -0.035 4.035 24 C -0.016 4.016 25 N -0.260 5.260 26 N -0.095 5.095 27 N -0.382 5.382 28 H 0.448 0.552 29 C -0.004 4.004 30 C -0.038 4.038 31 H 0.254 0.746 32 H 0.082 0.918 33 H 0.018 0.982 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.414 0.586 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -6.241 -6.653 9.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.054 3.946 15 H 0.048 0.952 16 C 0.010 3.990 17 N -0.342 5.342 18 C 0.300 3.700 19 O -0.438 6.438 20 C -0.125 4.125 21 H 0.125 0.875 22 C -0.136 4.136 23 C -0.074 4.074 24 C -0.155 4.155 25 N -0.126 5.126 26 N -0.074 5.074 27 N -0.101 5.101 28 H 0.294 0.706 29 C -0.140 4.140 30 C -0.077 4.077 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.085 -5.588 -7.886 9.887 hybrid contribution -0.598 0.312 1.043 1.242 sum 1.487 -5.276 -6.843 8.767 Atomic orbital electron populations 1.70004 1.05173 1.25575 1.53452 1.25068 0.95141 0.98100 1.00660 0.86505 0.79513 0.84111 0.77992 1.21188 1.21577 1.20381 1.19159 0.92098 0.84059 1.42812 0.91307 1.44069 1.37255 1.02065 1.47818 1.20725 0.88708 0.97375 0.88319 1.22186 1.00062 0.96567 0.99542 1.21360 0.97643 0.97365 0.98134 1.21945 0.98291 0.98240 0.98279 1.20721 0.93332 0.88505 0.92051 0.95198 1.21292 0.98322 0.90670 0.88747 1.46029 1.14633 1.43371 1.30178 1.20188 0.84738 0.82432 0.82689 1.90650 1.23747 1.55552 1.73863 1.21334 0.96515 1.00070 0.94602 0.87524 1.21447 0.96753 0.97905 0.97497 1.20040 0.91259 0.99560 0.96556 1.21779 0.99287 0.98353 0.96129 1.74798 1.03429 1.21213 1.13150 1.78535 1.09615 1.04670 1.14547 1.44669 1.17522 1.29653 1.18250 0.70631 1.21849 0.90892 1.04359 0.96906 1.20145 1.00406 0.97168 0.90030 0.93595 0.90003 0.96362 0.93539 0.92795 0.92909 0.93703 0.92061 0.93057 0.91534 0.92665 0.74820 0.89327 0.90907 0.89432 0.89632 0.89023 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.17 11.32 55.49 0.63 -22.54 16 2 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 3 Si 0.89 20.12 29.58 -169.99 -5.03 15.09 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -5.88 6.98 -15.06 -0.11 -5.98 16 8 H 0.07 1.66 5.91 -52.49 -0.31 1.35 16 9 N -0.59 -12.55 2.97 -164.79 -0.49 -13.04 16 10 C 0.17 3.72 5.27 -3.73 -0.02 3.70 16 11 C -0.14 -2.54 6.08 -26.62 -0.16 -2.70 16 12 C -0.11 -1.66 5.88 -26.69 -0.16 -1.81 16 13 C -0.13 -2.00 5.37 -26.61 -0.14 -2.15 16 14 C 0.16 2.86 3.00 -67.59 -0.20 2.65 16 15 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 16 C 0.13 2.29 4.43 -4.04 -0.02 2.28 16 17 N -0.69 -11.56 3.79 -60.29 -0.23 -11.79 16 18 C 0.51 8.35 7.13 -10.98 -0.08 8.27 16 19 O -0.56 -10.60 15.81 5.55 0.09 -10.51 16 20 C -0.10 -1.37 2.50 -91.50 -0.23 -1.60 16 21 H 0.11 1.52 8.12 -51.93 -0.42 1.10 16 22 C -0.10 -1.19 4.64 -26.46 -0.12 -1.31 16 23 C -0.04 -0.41 6.30 -27.71 -0.17 -0.58 16 24 C -0.02 -0.21 7.11 -83.12 -0.59 -0.81 16 25 N -0.26 -4.01 12.40 33.16 0.41 -3.60 16 26 N -0.09 -1.35 13.40 60.35 0.81 -0.54 16 27 N -0.38 -4.22 6.97 33.39 0.23 -3.98 16 28 H 0.45 3.15 8.96 -190.07 -1.70 1.45 16 29 C 0.00 -0.05 7.15 -82.50 -0.59 -0.64 16 30 C -0.04 -0.41 5.43 -27.75 -0.15 -0.57 16 31 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.08 2.00 6.26 -51.93 -0.33 1.67 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.28 7.39 -51.93 -0.38 0.90 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.41 7.19 7.11 -40.82 -0.29 6.90 16 43 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 44 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 48 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -29.40 373.28 -9.66 -39.06 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.88 Total: 7.31 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.83 Total: -1.09 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 1.36 Total: -55.48 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.40 -9.66 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024756676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.161 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds