Wall clock time and date at job start Tue Mar 31 2020 18:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48489 * 109.47245 * 269.99751 * 3 2 1 5 5 H 1.48501 * 109.47085 * 30.00307 * 3 2 1 6 6 H 1.48503 * 109.46733 * 149.99891 * 3 2 1 7 7 C 1.38811 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00292 * 165.41834 * 7 2 1 9 9 N 1.36941 * 119.99561 * 345.41267 * 7 2 1 10 10 C 1.46919 * 120.63665 * 328.32823 * 9 7 2 11 11 C 1.53167 * 108.77023 * 233.63017 * 10 9 7 12 12 C 1.53042 * 109.32322 * 305.35362 * 11 10 9 13 13 C 1.53040 * 109.52461 * 61.37532 * 12 11 10 14 14 C 1.46936 * 120.62392 * 148.34696 * 9 7 2 15 15 H 1.08999 * 109.58579 * 246.15539 * 14 9 7 16 16 C 1.52998 * 109.70660 * 6.51681 * 14 9 7 17 17 N 1.46501 * 109.46929 * 299.29493 * 16 14 9 18 18 C 1.34779 * 120.00028 * 180.02562 * 17 16 14 19 19 O 1.21285 * 119.99665 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00227 * 179.97438 * 18 17 16 21 21 H 1.08998 * 109.45531 * 59.96002 * 20 18 17 22 22 C 1.53103 * 109.45554 * 179.91155 * 20 18 17 23 23 C 1.53422 * 109.57964 * 190.07849 * 22 20 18 24 24 C 1.50599 * 108.33376 * 310.17290 * 23 22 20 25 25 N 1.32908 * 129.16254 * 196.58331 * 24 23 22 26 26 N 1.29026 * 108.63175 * 179.86979 * 25 24 23 27 27 N 1.29105 * 110.25878 * 0.02562 * 26 25 24 28 28 H 0.97007 * 126.00281 * 180.09283 * 27 26 25 29 29 C 1.34395 * 107.98642 * 0.06464 * 27 26 25 30 30 C 1.50535 * 129.25251 * 179.86639 * 29 27 26 31 31 H 0.96996 * 120.00337 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58875 * 353.42088 * 10 9 7 33 33 H 1.09006 * 109.58471 * 113.69555 * 10 9 7 34 34 H 1.08996 * 109.47766 * 185.40926 * 11 10 9 35 35 H 1.08994 * 109.49572 * 65.31879 * 11 10 9 36 36 H 1.08995 * 109.46020 * 301.35292 * 12 11 10 37 37 H 1.09000 * 109.45453 * 181.38225 * 12 11 10 38 38 H 1.08995 * 109.50056 * 58.59048 * 13 12 11 39 39 H 1.09001 * 109.49513 * 178.68620 * 13 12 11 40 40 H 1.09006 * 109.47067 * 59.28913 * 16 14 9 41 41 H 1.08990 * 109.47315 * 179.28895 * 16 14 9 42 42 H 0.97000 * 119.99828 * 359.97438 * 17 16 14 43 43 H 1.09000 * 109.45090 * 310.10663 * 22 20 18 44 44 H 1.08994 * 109.45408 * 70.04322 * 22 20 18 45 45 H 1.08998 * 109.68973 * 190.46022 * 23 22 20 46 46 H 1.08999 * 109.72642 * 69.90117 * 23 22 20 47 47 H 1.08996 * 109.69394 * 76.76768 * 30 29 27 48 48 H 1.09002 * 109.72410 * 316.20593 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0642 -1.2173 -0.2349 9 7 1.3587 -2.3688 0.2998 10 6 0.2305 -2.3761 1.2409 11 6 0.5068 -3.4135 2.3334 12 6 0.7917 -4.7695 1.6837 13 6 2.0337 -4.6606 0.7962 14 6 1.7749 -3.6372 -0.3141 15 1 0.9849 -4.0021 -0.9704 16 6 3.0558 -3.4231 -1.1230 17 7 2.8051 -2.4453 -2.1847 18 6 3.7967 -2.0980 -3.0289 19 8 4.8967 -2.5948 -2.9093 20 6 3.5387 -1.0926 -4.1215 21 1 3.2260 -0.1471 -3.6783 22 6 4.8211 -0.8774 -4.9296 23 6 4.6393 0.3184 -5.8735 24 6 3.3478 0.1357 -6.6263 25 7 2.9293 0.7394 -7.7339 26 7 1.7619 0.2811 -8.0372 27 7 1.3903 -0.6030 -7.1729 28 1 0.5533 -1.0932 -7.1824 29 6 2.3672 -0.7251 -6.2580 30 6 2.4305 -1.6146 -5.0452 31 1 -0.4850 0.8400 0.0004 32 1 0.1246 -1.3895 1.6920 33 1 -0.6859 -2.6356 0.7107 34 1 -0.3641 -3.4974 2.9834 35 1 1.3709 -3.1024 2.9203 36 1 -0.0631 -5.0683 1.0771 37 1 0.9644 -5.5149 2.4600 38 1 2.8835 -4.3378 1.3976 39 1 2.2499 -5.6322 0.3521 40 1 3.8427 -3.0524 -0.4661 41 1 3.3680 -4.3687 -1.5661 42 1 1.9252 -2.0483 -2.2806 43 1 5.6499 -0.6803 -4.2497 44 1 5.0362 -1.7718 -5.5142 45 1 5.4713 0.3612 -6.5764 46 1 4.5997 1.2412 -5.2948 47 1 2.6580 -2.6360 -5.3502 48 1 1.4746 -1.5918 -4.5219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024756676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:57 Heat of formation + Delta-G solvation = 41.814713 kcal Electronic energy + Delta-G solvation = -30049.779379 eV Core-core repulsion = 26140.576192 eV Total energy + Delta-G solvation = -3909.203188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.49369 -40.99994 -39.41032 -37.54301 -35.65757 -34.92806 -34.85486 -32.53479 -31.70672 -31.31123 -31.08330 -27.69223 -26.60251 -25.46662 -24.12078 -23.85095 -23.70701 -22.24709 -21.49920 -20.72186 -20.32550 -19.22840 -18.46979 -17.75549 -17.27907 -17.18957 -16.69279 -16.43180 -15.88469 -15.58785 -15.08776 -15.02175 -14.90311 -14.77997 -14.69776 -14.51195 -14.35052 -14.03506 -13.59415 -13.43051 -13.10127 -13.01075 -12.80274 -12.77639 -12.62959 -12.51351 -12.29151 -12.20849 -12.05095 -12.03930 -11.76535 -11.60782 -11.51065 -11.33946 -11.11305 -11.05185 -10.63151 -10.48020 -9.93202 -9.75457 -8.51951 -7.80688 -5.26850 0.49597 1.41171 1.41784 1.49640 1.53702 1.64327 1.88737 2.43284 2.52124 3.20623 3.35213 3.49019 3.62958 3.69763 3.80243 3.95599 4.04639 4.06854 4.24272 4.26652 4.31750 4.37628 4.48011 4.48382 4.56365 4.60783 4.70290 4.76800 4.80951 4.88273 4.91775 4.99802 5.03613 5.10673 5.17576 5.22353 5.25070 5.30763 5.34568 5.41795 5.50045 5.65953 5.70479 5.79555 5.86249 5.94800 6.47441 6.80349 7.22573 7.35737 7.42439 7.92262 8.46062 9.23431 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003856 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.643598 B = 7260.090736 C = 7961.008196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.029 4.029 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.036 0.964 16 C 0.139 3.861 17 N -0.693 5.693 18 C 0.517 3.483 19 O -0.585 6.585 20 C -0.099 4.099 21 H 0.097 0.903 22 C -0.090 4.090 23 C -0.030 4.030 24 C -0.031 4.031 25 N -0.290 5.290 26 N -0.114 5.114 27 N -0.363 5.363 28 H 0.465 0.535 29 C 0.002 3.998 30 C -0.029 4.029 31 H 0.246 0.754 32 H 0.045 0.955 33 H 0.003 0.997 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.412 0.588 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -8.231 -6.891 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.225 4.225 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.229 1.229 6 H -0.210 1.210 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.325 5.325 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.342 5.342 18 C 0.303 3.697 19 O -0.467 6.467 20 C -0.121 4.121 21 H 0.115 0.885 22 C -0.128 4.128 23 C -0.069 4.069 24 C -0.172 4.172 25 N -0.156 5.156 26 N -0.092 5.092 27 N -0.085 5.085 28 H 0.314 0.686 29 C -0.135 4.135 30 C -0.068 4.068 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.249 0.751 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.128 0.872 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.208 -7.601 -8.140 11.354 hybrid contribution -0.626 0.863 1.164 1.579 sum 1.582 -6.738 -6.976 9.827 Atomic orbital electron populations 1.70103 1.05943 1.25190 1.55649 1.25422 0.95455 0.99724 1.01909 0.85879 0.78164 0.82174 0.77889 1.20568 1.22858 1.20983 1.19162 0.91692 0.84828 1.40485 0.91984 1.44250 1.36982 1.02860 1.48420 1.20534 0.88280 0.96711 0.89109 1.22053 1.00343 0.96796 0.98363 1.21343 0.97640 0.96299 0.98752 1.21907 0.98094 0.98850 0.97438 1.20884 0.93491 0.87292 0.92872 0.94654 1.21238 0.97234 0.91510 0.88585 1.46052 1.14619 1.43390 1.30187 1.20593 0.84001 0.82245 0.82818 1.90638 1.24703 1.56683 1.74639 1.21295 0.97962 0.98643 0.94223 0.88463 1.21376 0.95868 0.98348 0.97241 1.20043 0.91135 0.99240 0.96495 1.22129 1.00292 0.98704 0.96042 1.74765 1.04169 1.22381 1.14262 1.78467 1.09634 1.05660 1.15488 1.44667 1.17911 1.28708 1.17204 0.68583 1.21927 0.90617 1.03945 0.96986 1.20114 0.99965 0.97627 0.89117 0.94438 0.93654 0.97931 0.91968 0.93737 0.92336 0.91003 0.92988 0.89949 0.93883 0.90650 0.75125 0.90049 0.90430 0.88113 0.89547 0.87215 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 11.32 21.65 0.25 -48.19 16 2 C -0.03 -1.41 4.95 84.86 0.42 -0.99 16 3 Si 0.93 41.76 29.58 68.60 2.03 43.79 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.23 -10.78 6.98 84.03 0.59 -10.19 16 8 H 0.06 2.98 5.91 -2.91 -0.02 2.97 16 9 N -0.60 -25.30 2.97 -675.27 -2.00 -27.30 16 10 C 0.18 7.64 5.27 86.36 0.45 8.09 16 11 C -0.14 -4.58 6.08 30.66 0.19 -4.40 16 12 C -0.10 -2.83 5.88 30.62 0.18 -2.65 16 13 C -0.12 -3.49 5.37 30.67 0.16 -3.32 16 14 C 0.16 5.39 3.00 44.97 0.13 5.52 16 15 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 16 C 0.14 4.53 4.43 86.38 0.38 4.91 16 17 N -0.69 -22.29 3.79 -463.06 -1.76 -24.05 16 18 C 0.52 16.14 7.13 87.66 0.63 16.76 16 19 O -0.59 -21.57 15.81 -3.04 -0.05 -21.61 16 20 C -0.10 -2.50 2.50 -11.37 -0.03 -2.53 16 21 H 0.10 2.68 8.12 -2.39 -0.02 2.66 16 22 C -0.09 -2.07 4.64 30.77 0.14 -1.93 16 23 C -0.03 -0.67 6.30 29.96 0.19 -0.48 16 24 C -0.03 -0.81 7.11 41.75 0.30 -0.52 16 25 N -0.29 -8.75 12.40 -48.99 -0.61 -9.36 16 26 N -0.11 -3.12 13.40 37.02 0.50 -2.62 16 27 N -0.36 -7.40 6.97 -48.27 -0.34 -7.74 16 28 H 0.46 5.59 8.96 -219.67 -1.97 3.62 16 29 C 0.00 0.05 7.15 41.50 0.30 0.34 16 30 C -0.03 -0.57 5.43 29.94 0.16 -0.41 16 31 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 32 H 0.04 2.26 6.26 -2.39 -0.01 2.24 16 33 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.62 7.39 -2.38 -0.02 1.60 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.41 13.83 7.11 -92.71 -0.66 13.18 16 43 H 0.08 2.01 7.76 -2.39 -0.02 1.99 16 44 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 45 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.11 1.84 8.11 -2.39 -0.02 1.82 16 48 H 0.10 1.89 7.90 -2.39 -0.02 1.87 16 Total: -1.00 -63.45 373.28 0.58 -62.88 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.64 Total: 26.00 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 4.19 Total: 8.22 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -3.96 Total: -119.27 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -63.45 0.58 -62.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024756676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.694 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds