Wall clock time and date at job start Tue Mar 31 2020 18:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47206 * 269.99862 * 3 2 1 5 5 H 1.48490 * 109.47327 * 30.00467 * 3 2 1 6 6 H 1.48507 * 109.46831 * 150.00626 * 3 2 1 7 7 C 1.38812 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00370 * 170.06431 * 7 2 1 9 9 N 1.36937 * 120.00039 * 350.06347 * 7 2 1 10 10 C 1.46932 * 120.62989 * 319.73631 * 9 7 2 11 11 C 1.53183 * 108.77665 * 126.40933 * 10 9 7 12 12 C 1.53038 * 109.31352 * 54.63628 * 11 10 9 13 13 C 1.53038 * 109.53687 * 298.63235 * 12 11 10 14 14 C 1.46924 * 120.63487 * 139.75261 * 9 7 2 15 15 H 1.09001 * 109.58654 * 113.79786 * 14 9 7 16 16 C 1.53004 * 109.58427 * 353.52020 * 14 9 7 17 17 N 1.46499 * 109.47054 * 62.96554 * 16 14 9 18 18 C 1.34779 * 119.99825 * 185.19397 * 17 16 14 19 19 O 1.21282 * 120.00418 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99894 * 180.02562 * 18 17 16 21 21 H 1.08994 * 109.46121 * 59.97232 * 20 18 17 22 22 C 1.53110 * 109.45741 * 179.97438 * 20 18 17 23 23 C 1.53428 * 109.57960 * 190.08889 * 22 20 18 24 24 C 1.50588 * 108.33620 * 310.19078 * 23 22 20 25 25 N 1.32917 * 129.16354 * 196.60639 * 24 23 22 26 26 N 1.29015 * 108.63748 * 179.77595 * 25 24 23 27 27 N 1.29105 * 110.25987 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.00968 * 180.02562 * 27 26 25 29 29 C 1.34398 * 107.98496 * 0.07017 * 27 26 25 30 30 C 1.50534 * 129.25267 * 179.85231 * 29 27 26 31 31 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.58299 * 246.19950 * 10 9 7 33 33 H 1.09001 * 109.58547 * 6.61979 * 10 9 7 34 34 H 1.09000 * 109.49873 * 174.58322 * 11 10 9 35 35 H 1.09000 * 109.50003 * 294.68066 * 11 10 9 36 36 H 1.09001 * 109.46143 * 178.61507 * 12 11 10 37 37 H 1.08998 * 109.44921 * 58.64495 * 12 11 10 38 38 H 1.09000 * 109.49846 * 301.40982 * 13 12 11 39 39 H 1.09005 * 109.50119 * 181.31394 * 13 12 11 40 40 H 1.08992 * 109.47251 * 182.97016 * 16 14 9 41 41 H 1.09005 * 109.47120 * 302.97303 * 16 14 9 42 42 H 0.96999 * 120.00388 * 5.20022 * 17 16 14 43 43 H 1.08994 * 109.45634 * 310.12769 * 22 20 18 44 44 H 1.09006 * 109.45424 * 70.06138 * 22 20 18 45 45 H 1.08996 * 109.69402 * 190.47751 * 23 22 20 46 46 H 1.09000 * 109.71883 * 69.91644 * 23 22 20 47 47 H 1.08997 * 109.69844 * 76.71541 * 30 29 27 48 48 H 1.09003 * 109.72910 * 316.14850 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0780 -1.2091 -0.1619 9 7 1.3410 -2.3793 0.2036 10 6 0.2679 -2.4667 1.2035 11 6 -0.9904 -3.0221 0.5292 12 6 -0.6553 -4.3515 -0.1509 13 6 0.4081 -4.1219 -1.2272 14 6 1.6824 -3.5790 -0.5729 15 1 2.1039 -4.3351 0.0894 16 6 2.7033 -3.2171 -1.6535 17 7 3.9396 -2.7509 -1.0207 18 6 4.9476 -2.2766 -1.7794 19 8 4.8309 -2.2352 -2.9859 20 6 6.2195 -1.7975 -1.1286 21 1 6.6725 -2.6166 -0.5702 22 6 7.1934 -1.3142 -2.2067 23 6 8.5713 -1.0642 -1.5801 24 6 8.3864 -0.2086 -0.3548 25 7 9.2887 0.4943 0.3223 26 7 8.6981 1.0855 1.3052 27 7 7.4387 0.8012 1.3063 28 1 6.7820 1.1229 1.9435 29 6 7.1978 -0.0197 0.2697 30 6 5.8999 -0.6427 -0.1703 31 1 -0.4851 0.8401 0.0004 32 1 0.5741 -3.1321 2.0106 33 1 0.0602 -1.4745 1.6042 34 1 -1.7646 -3.1824 1.2795 35 1 -1.3473 -2.3117 -0.2165 36 1 -1.5547 -4.7611 -0.6106 37 1 -0.2750 -5.0532 0.5914 38 1 0.0381 -3.4013 -1.9565 39 1 0.6294 -5.0650 -1.7271 40 1 2.9156 -4.0963 -2.2617 41 1 2.2985 -2.4269 -2.2858 42 1 4.0329 -2.7836 -0.0558 43 1 7.2804 -2.0733 -2.9840 44 1 6.8202 -0.3882 -2.6443 45 1 9.2119 -0.5481 -2.2952 46 1 9.0256 -2.0144 -1.2993 47 1 5.2903 0.1016 -0.6826 48 1 5.3618 -1.0237 0.6977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024756678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:01 Heat of formation + Delta-G solvation = 64.142077 kcal Electronic energy + Delta-G solvation = -30307.924155 eV Core-core repulsion = 26399.689155 eV Total energy + Delta-G solvation = -3908.235001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.48930 -39.79384 -37.86648 -36.45888 -34.35122 -33.88248 -33.01577 -31.15855 -30.31808 -30.14621 -29.85438 -26.16800 -25.13520 -24.21728 -23.06680 -22.72729 -22.16826 -20.78984 -20.39922 -19.40516 -18.97042 -18.23604 -17.19541 -16.40550 -16.01872 -15.67244 -15.46699 -15.00288 -14.38612 -14.07711 -14.03636 -13.98105 -13.59194 -13.55411 -13.37042 -13.33096 -12.99105 -12.32923 -12.17748 -12.08422 -11.93828 -11.67749 -11.47418 -11.26400 -11.25133 -11.16647 -11.08907 -10.92551 -10.62917 -10.45978 -10.35155 -10.30908 -10.26324 -9.89900 -9.65718 -9.43970 -9.30934 -8.93717 -8.58874 -8.27706 -6.55961 -5.90751 -3.49658 1.48988 2.45114 2.59962 3.03958 3.16001 3.22505 3.30518 3.60795 4.16071 4.31375 4.49957 4.68808 4.73816 4.87587 5.09020 5.21139 5.24651 5.29731 5.33458 5.37666 5.47783 5.52586 5.72314 5.74511 5.75357 5.80479 5.94410 6.00328 6.04036 6.07860 6.15474 6.18667 6.28113 6.34970 6.41739 6.54165 6.68437 6.74761 6.76668 6.82982 6.91230 6.96980 7.08488 7.44812 7.59871 7.69849 7.99382 8.38450 8.40776 8.65389 9.09913 9.68057 10.33334 11.14197 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.004145 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.091997 B = 6753.072876 C = 7900.574021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.017 3.983 3 Si 0.889 3.111 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.268 4.268 8 H 0.077 0.923 9 N -0.584 5.584 10 C 0.167 3.833 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.030 0.970 16 C 0.135 3.865 17 N -0.699 5.699 18 C 0.514 3.486 19 O -0.547 6.547 20 C -0.099 4.099 21 H 0.101 0.899 22 C -0.100 4.100 23 C -0.031 4.031 24 C -0.021 4.021 25 N -0.260 5.260 26 N -0.095 5.095 27 N -0.381 5.381 28 H 0.450 0.550 29 C -0.001 4.001 30 C -0.044 4.044 31 H 0.253 0.747 32 H -0.003 1.003 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.404 0.596 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.234 -5.709 1.297 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.398 4.398 8 H 0.094 0.906 9 N -0.308 5.308 10 C 0.042 3.958 11 C -0.167 4.167 12 C -0.146 4.146 13 C -0.167 4.167 14 C 0.052 3.948 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.425 6.425 20 C -0.121 4.121 21 H 0.119 0.881 22 C -0.139 4.139 23 C -0.071 4.071 24 C -0.161 4.161 25 N -0.126 5.126 26 N -0.074 5.074 27 N -0.100 5.100 28 H 0.296 0.704 29 C -0.137 4.137 30 C -0.084 4.084 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.240 0.760 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.272 -4.775 1.088 10.486 hybrid contribution -1.213 0.781 0.486 1.523 sum 8.059 -3.994 1.574 9.131 Atomic orbital electron populations 1.69934 1.05282 1.25350 1.52380 1.25396 0.95207 0.98286 0.99496 0.86571 0.79056 0.84618 0.77863 1.21199 1.21665 1.20723 1.19418 0.91335 0.83231 1.45831 0.90569 1.44118 1.40976 1.06303 1.39397 1.20726 0.86384 0.99577 0.89106 1.21897 0.98827 0.96003 0.99976 1.21387 0.97429 0.98099 0.97645 1.21939 0.97181 0.99318 0.98266 1.20887 0.92145 0.90647 0.91131 0.95270 1.21355 0.83240 0.98617 0.95636 1.46065 1.15278 1.62929 1.10633 1.20201 0.84554 0.77972 0.87416 1.90674 1.81630 1.55919 1.14326 1.21322 0.95119 0.98242 0.97450 0.88077 1.21476 0.92273 1.03195 0.96940 1.20000 0.98074 0.97620 0.91369 1.21758 0.89216 1.03780 1.01327 1.74784 1.26902 1.08693 1.02264 1.78537 0.89033 1.21365 1.18446 1.44722 1.09742 1.33007 1.22539 0.70442 1.21888 0.99663 0.99602 0.92501 1.20247 0.90902 0.97309 0.99902 0.93661 0.98557 0.89768 0.94550 0.90571 0.93921 0.93553 0.91777 0.93722 0.92963 0.90346 0.76020 0.89324 0.90690 0.89443 0.89798 0.88549 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.16 11.13 55.49 0.62 -22.55 16 2 C 0.02 0.42 5.05 -17.43 -0.09 0.33 16 3 Si 0.89 19.50 29.57 -169.99 -5.03 14.47 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.27 -6.07 7.84 -15.06 -0.12 -6.19 16 8 H 0.08 1.59 4.73 -52.49 -0.25 1.34 16 9 N -0.58 -12.31 2.92 -164.78 -0.48 -12.79 16 10 C 0.17 3.53 5.62 -3.71 -0.02 3.51 16 11 C -0.13 -2.49 6.06 -26.62 -0.16 -2.65 16 12 C -0.11 -1.81 5.88 -26.69 -0.16 -1.97 16 13 C -0.13 -2.19 5.38 -26.61 -0.14 -2.33 16 14 C 0.16 2.84 2.96 -67.60 -0.20 2.64 16 15 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 16 C 0.14 2.36 4.56 -4.04 -0.02 2.34 16 17 N -0.70 -10.91 3.22 -60.29 -0.19 -11.10 16 18 C 0.51 7.99 7.11 -10.99 -0.08 7.91 16 19 O -0.55 -10.44 15.80 5.56 0.09 -10.35 16 20 C -0.10 -1.19 2.50 -91.49 -0.23 -1.42 16 21 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 22 C -0.10 -1.16 4.64 -26.45 -0.12 -1.28 16 23 C -0.03 -0.33 6.30 -27.72 -0.17 -0.51 16 24 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 25 N -0.26 -3.96 12.40 33.16 0.41 -3.55 16 26 N -0.09 -1.38 13.40 60.35 0.81 -0.57 16 27 N -0.38 -4.65 6.97 33.39 0.23 -4.41 16 28 H 0.45 4.12 8.96 -190.07 -1.70 2.41 16 29 C 0.00 -0.01 7.15 -82.50 -0.59 -0.60 16 30 C -0.04 -0.55 5.33 -27.74 -0.15 -0.69 16 31 H 0.25 6.57 8.31 -40.82 -0.34 6.24 16 32 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.08 2.03 6.11 -51.93 -0.32 1.71 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.72 7.86 -51.93 -0.41 1.31 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.66 7.82 -51.93 -0.41 1.25 16 42 H 0.40 5.82 7.20 -40.82 -0.29 5.53 16 43 H 0.09 1.00 7.76 -51.93 -0.40 0.60 16 44 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.39 8.12 -51.93 -0.42 0.97 16 48 H 0.10 1.10 7.89 -51.93 -0.41 0.69 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -29.24 372.62 -9.59 -38.82 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.82 Total: 8.17 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.84 Total: -1.76 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 1.39 Total: -54.97 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.24 -9.59 -38.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024756678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.966 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds