Wall clock time and date at job start Tue Mar 31 2020 18:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47206 * 269.99862 * 3 2 1 5 5 H 1.48490 * 109.47327 * 30.00467 * 3 2 1 6 6 H 1.48507 * 109.46831 * 150.00626 * 3 2 1 7 7 C 1.38812 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00370 * 170.06431 * 7 2 1 9 9 N 1.36937 * 120.00039 * 350.06347 * 7 2 1 10 10 C 1.46932 * 120.62989 * 319.73631 * 9 7 2 11 11 C 1.53183 * 108.77665 * 126.40933 * 10 9 7 12 12 C 1.53038 * 109.31352 * 54.63628 * 11 10 9 13 13 C 1.53038 * 109.53687 * 298.63235 * 12 11 10 14 14 C 1.46924 * 120.63487 * 139.75261 * 9 7 2 15 15 H 1.09001 * 109.58654 * 113.79786 * 14 9 7 16 16 C 1.53004 * 109.58427 * 353.52020 * 14 9 7 17 17 N 1.46499 * 109.47054 * 62.96554 * 16 14 9 18 18 C 1.34779 * 119.99825 * 185.19397 * 17 16 14 19 19 O 1.21282 * 120.00418 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99894 * 180.02562 * 18 17 16 21 21 H 1.08994 * 109.46121 * 59.97232 * 20 18 17 22 22 C 1.53110 * 109.45741 * 179.97438 * 20 18 17 23 23 C 1.53428 * 109.57960 * 190.08889 * 22 20 18 24 24 C 1.50588 * 108.33620 * 310.19078 * 23 22 20 25 25 N 1.32917 * 129.16354 * 196.60639 * 24 23 22 26 26 N 1.29015 * 108.63748 * 179.77595 * 25 24 23 27 27 N 1.29105 * 110.25987 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.00968 * 180.02562 * 27 26 25 29 29 C 1.34398 * 107.98496 * 0.07017 * 27 26 25 30 30 C 1.50534 * 129.25267 * 179.85231 * 29 27 26 31 31 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.58299 * 246.19950 * 10 9 7 33 33 H 1.09001 * 109.58547 * 6.61979 * 10 9 7 34 34 H 1.09000 * 109.49873 * 174.58322 * 11 10 9 35 35 H 1.09000 * 109.50003 * 294.68066 * 11 10 9 36 36 H 1.09001 * 109.46143 * 178.61507 * 12 11 10 37 37 H 1.08998 * 109.44921 * 58.64495 * 12 11 10 38 38 H 1.09000 * 109.49846 * 301.40982 * 13 12 11 39 39 H 1.09005 * 109.50119 * 181.31394 * 13 12 11 40 40 H 1.08992 * 109.47251 * 182.97016 * 16 14 9 41 41 H 1.09005 * 109.47120 * 302.97303 * 16 14 9 42 42 H 0.96999 * 120.00388 * 5.20022 * 17 16 14 43 43 H 1.08994 * 109.45634 * 310.12769 * 22 20 18 44 44 H 1.09006 * 109.45424 * 70.06138 * 22 20 18 45 45 H 1.08996 * 109.69402 * 190.47751 * 23 22 20 46 46 H 1.09000 * 109.71883 * 69.91644 * 23 22 20 47 47 H 1.08997 * 109.69844 * 76.71541 * 30 29 27 48 48 H 1.09003 * 109.72910 * 316.14850 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0780 -1.2091 -0.1619 9 7 1.3410 -2.3793 0.2036 10 6 0.2679 -2.4667 1.2035 11 6 -0.9904 -3.0221 0.5292 12 6 -0.6553 -4.3515 -0.1509 13 6 0.4081 -4.1219 -1.2272 14 6 1.6824 -3.5790 -0.5729 15 1 2.1039 -4.3351 0.0894 16 6 2.7033 -3.2171 -1.6535 17 7 3.9396 -2.7509 -1.0207 18 6 4.9476 -2.2766 -1.7794 19 8 4.8309 -2.2352 -2.9859 20 6 6.2195 -1.7975 -1.1286 21 1 6.6725 -2.6166 -0.5702 22 6 7.1934 -1.3142 -2.2067 23 6 8.5713 -1.0642 -1.5801 24 6 8.3864 -0.2086 -0.3548 25 7 9.2887 0.4943 0.3223 26 7 8.6981 1.0855 1.3052 27 7 7.4387 0.8012 1.3063 28 1 6.7820 1.1229 1.9435 29 6 7.1978 -0.0197 0.2697 30 6 5.8999 -0.6427 -0.1703 31 1 -0.4851 0.8401 0.0004 32 1 0.5741 -3.1321 2.0106 33 1 0.0602 -1.4745 1.6042 34 1 -1.7646 -3.1824 1.2795 35 1 -1.3473 -2.3117 -0.2165 36 1 -1.5547 -4.7611 -0.6106 37 1 -0.2750 -5.0532 0.5914 38 1 0.0381 -3.4013 -1.9565 39 1 0.6294 -5.0650 -1.7271 40 1 2.9156 -4.0963 -2.2617 41 1 2.2985 -2.4269 -2.2858 42 1 4.0329 -2.7836 -0.0558 43 1 7.2804 -2.0733 -2.9840 44 1 6.8202 -0.3882 -2.6443 45 1 9.2119 -0.5481 -2.2952 46 1 9.0256 -2.0144 -1.2993 47 1 5.2903 0.1016 -0.6826 48 1 5.3618 -1.0237 0.6977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024756678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:00 Heat of formation + Delta-G solvation = 45.831560 kcal Electronic energy + Delta-G solvation = -30308.718159 eV Core-core repulsion = 26399.689155 eV Total energy + Delta-G solvation = -3909.029004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.50230 -41.05945 -39.33648 -37.54946 -35.73579 -34.91188 -34.72398 -32.50306 -31.74121 -31.31047 -31.06828 -27.68676 -26.57986 -25.38717 -24.12420 -23.81670 -23.70990 -22.23979 -21.60269 -20.65034 -20.34009 -19.28075 -18.61024 -17.66888 -17.22164 -17.12557 -16.73798 -16.35185 -15.93648 -15.60417 -15.08646 -15.01226 -14.89138 -14.76156 -14.69614 -14.58783 -14.41791 -13.77707 -13.55089 -13.33922 -13.05814 -13.03425 -12.98089 -12.75544 -12.62670 -12.54013 -12.21201 -12.16458 -12.04113 -11.97137 -11.75786 -11.59699 -11.45006 -11.33822 -11.15182 -10.99317 -10.67442 -10.37854 -9.93701 -9.69150 -8.31246 -7.74027 -5.33199 0.48134 1.37898 1.42480 1.43706 1.50670 1.60060 1.89590 2.39027 2.52349 3.19938 3.41561 3.49189 3.65835 3.72321 3.79213 3.93098 4.03763 4.09031 4.25777 4.31807 4.35652 4.36788 4.48683 4.55759 4.56733 4.64500 4.75609 4.80179 4.86471 4.92079 4.99237 5.00867 5.05742 5.14573 5.20719 5.24355 5.26807 5.35796 5.37913 5.43735 5.53863 5.68059 5.76000 5.85606 5.88981 5.98932 6.59101 6.74631 7.30167 7.35464 7.41523 7.94627 8.54846 9.27998 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.004145 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.091997 B = 6753.072876 C = 7900.574021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.040 4.040 3 Si 0.928 3.072 4 H -0.306 1.306 5 H -0.307 1.307 6 H -0.243 1.243 7 C -0.248 4.248 8 H 0.097 0.903 9 N -0.597 5.597 10 C 0.168 3.832 11 C -0.122 4.122 12 C -0.102 4.102 13 C -0.125 4.125 14 C 0.159 3.841 15 H 0.057 0.943 16 C 0.143 3.857 17 N -0.696 5.696 18 C 0.513 3.487 19 O -0.584 6.584 20 C -0.089 4.089 21 H 0.135 0.865 22 C -0.096 4.096 23 C -0.025 4.025 24 C -0.025 4.025 25 N -0.287 5.287 26 N -0.113 5.113 27 N -0.369 5.369 28 H 0.461 0.539 29 C -0.001 4.001 30 C -0.040 4.040 31 H 0.240 0.760 32 H 0.016 0.984 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.412 0.588 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -8.192 2.143 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.236 4.236 3 Si 0.758 3.242 4 H -0.234 1.234 5 H -0.235 1.235 6 H -0.167 1.167 7 C -0.379 4.379 8 H 0.114 0.886 9 N -0.322 5.322 10 C 0.042 3.958 11 C -0.162 4.162 12 C -0.139 4.139 13 C -0.165 4.165 14 C 0.053 3.947 15 H 0.074 0.926 16 C 0.019 3.981 17 N -0.346 5.346 18 C 0.300 3.700 19 O -0.465 6.465 20 C -0.111 4.111 21 H 0.152 0.848 22 C -0.134 4.134 23 C -0.064 4.064 24 C -0.165 4.165 25 N -0.152 5.152 26 N -0.092 5.092 27 N -0.090 5.090 28 H 0.310 0.690 29 C -0.137 4.137 30 C -0.080 4.080 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.250 0.750 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.094 0.906 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.082 -7.270 1.981 13.401 hybrid contribution -1.786 1.491 0.189 2.334 sum 9.296 -5.779 2.169 11.159 Atomic orbital electron populations 1.70100 1.06469 1.24652 1.55358 1.25989 0.95702 1.00796 1.01154 0.85910 0.79801 0.81838 0.76670 1.23436 1.23474 1.16690 1.19880 0.92288 0.83564 1.42197 0.88626 1.44330 1.40844 1.06836 1.40166 1.20638 0.87244 0.98148 0.89738 1.21769 0.98410 0.96640 0.99335 1.21348 0.98113 0.96669 0.97788 1.21907 0.96780 0.99926 0.97873 1.21028 0.92659 0.89715 0.91282 0.92579 1.21162 0.83872 0.97871 0.95239 1.46025 1.14689 1.62838 1.11071 1.20794 0.85298 0.76928 0.86955 1.90666 1.82411 1.57274 1.16161 1.21311 0.93245 0.99022 0.97501 0.84757 1.21423 0.92679 1.02385 0.96922 1.20061 0.97502 0.98371 0.90425 1.22214 0.89032 1.03543 1.01747 1.74767 1.27849 1.09621 1.02970 1.78493 0.89878 1.21973 1.18827 1.44755 1.09459 1.32319 1.22505 0.69013 1.21897 0.99527 0.99737 0.92587 1.20194 0.90631 0.96897 1.00253 0.95092 0.96643 0.93307 0.93202 0.94633 0.92310 0.91355 0.95037 0.90433 0.91073 0.94672 0.75005 0.88889 0.92591 0.88625 0.87460 0.90641 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 11.13 21.65 0.24 -49.97 16 2 C -0.04 -1.99 5.05 84.86 0.43 -1.56 16 3 Si 0.93 40.55 29.57 68.60 2.03 42.58 16 4 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.31 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.24 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.25 -11.13 7.84 84.03 0.66 -10.47 16 8 H 0.10 3.83 4.73 -2.91 -0.01 3.81 16 9 N -0.60 -24.57 2.92 -675.24 -1.97 -26.55 16 10 C 0.17 6.98 5.62 86.36 0.49 7.46 16 11 C -0.12 -4.70 6.06 30.67 0.19 -4.51 16 12 C -0.10 -3.15 5.88 30.62 0.18 -2.97 16 13 C -0.13 -4.04 5.38 30.67 0.16 -3.87 16 14 C 0.16 5.32 2.96 44.98 0.13 5.45 16 15 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 16 C 0.14 4.77 4.56 86.38 0.39 5.16 16 17 N -0.70 -20.06 3.22 -463.06 -1.49 -21.55 16 18 C 0.51 14.94 7.11 87.65 0.62 15.56 16 19 O -0.58 -21.75 15.80 -3.03 -0.05 -21.80 16 20 C -0.09 -1.87 2.50 -11.36 -0.03 -1.90 16 21 H 0.13 2.02 8.12 -2.39 -0.02 2.00 16 22 C -0.10 -1.98 4.64 30.77 0.14 -1.84 16 23 C -0.02 -0.45 6.30 29.96 0.19 -0.26 16 24 C -0.02 -0.60 7.11 41.75 0.30 -0.30 16 25 N -0.29 -8.23 12.40 -48.99 -0.61 -8.83 16 26 N -0.11 -3.11 13.40 37.02 0.50 -2.61 16 27 N -0.37 -8.22 6.97 -48.27 -0.34 -8.56 16 28 H 0.46 7.41 8.96 -219.68 -1.97 5.44 16 29 C 0.00 -0.02 7.15 41.50 0.30 0.28 16 30 C -0.04 -0.89 5.33 29.94 0.16 -0.73 16 31 H 0.24 13.20 8.31 -92.70 -0.77 12.43 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 2.39 6.11 -2.39 -0.01 2.38 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.64 7.86 -2.39 -0.02 1.62 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.49 7.82 -2.38 -0.02 1.47 16 42 H 0.41 10.49 7.20 -92.71 -0.67 9.83 16 43 H 0.09 1.88 7.76 -2.39 -0.02 1.87 16 44 H 0.06 1.38 8.12 -2.38 -0.02 1.36 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 48 H 0.11 2.13 7.89 -2.39 -0.02 2.11 16 Total: -1.00 -66.03 372.62 0.98 -65.05 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -1.64 Total: 26.73 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.31 Total: 5.50 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.67 Total: -118.07 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -66.03 0.98 -65.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024756678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.885 kcal (2) G-P(sol) polarization free energy of solvation -66.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds