Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48494 * 109.46953 * 267.65309 * 3 2 1 5 5 H 1.48496 * 109.47234 * 27.65703 * 3 2 1 6 6 H 1.48503 * 109.46919 * 147.65806 * 3 2 1 7 7 C 1.38810 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99971 * 334.12536 * 7 2 1 9 9 N 1.36940 * 120.00287 * 154.12187 * 7 2 1 10 10 C 1.47429 * 125.64831 * 158.15336 * 9 7 2 11 11 C 1.54910 * 104.82825 * 204.16587 * 10 9 7 12 12 C 1.55155 * 101.58267 * 322.99116 * 11 10 9 13 13 C 1.47014 * 125.64618 * 338.20236 * 9 7 2 14 14 H 1.08993 * 109.88939 * 59.32528 * 13 9 7 15 15 C 1.53005 * 109.87945 * 298.31606 * 13 9 7 16 16 H 1.09000 * 109.58733 * 53.59869 * 15 13 9 17 17 C 1.53192 * 109.70449 * 293.23897 * 15 13 9 18 18 C 1.53044 * 109.30972 * 185.50724 * 17 15 13 19 19 C 1.53034 * 109.53992 * 61.36984 * 18 17 15 20 20 C 1.53627 * 109.23798 * 298.50999 * 19 18 17 21 21 N 1.46915 * 108.54597 * 54.85572 * 20 19 18 22 22 C 1.34779 * 120.63264 * 126.36491 * 21 20 19 23 23 O 1.21279 * 120.00519 * 182.61470 * 22 21 20 24 24 C 1.50708 * 119.99737 * 2.62396 * 22 21 20 25 25 N 1.46502 * 109.47039 * 182.19868 * 24 22 21 26 26 N 1.28597 * 124.61917 * 265.37156 * 25 24 22 27 27 C 1.31380 * 108.71768 * 179.83228 * 26 25 24 28 28 C 1.39677 * 105.90077 * 0.40612 * 27 26 25 29 29 N 1.28594 * 124.61708 * 85.66599 * 25 24 22 30 30 H 0.96996 * 119.99952 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.36641 * 323.00147 * 10 9 7 32 32 H 1.08998 * 110.36287 * 85.21902 * 10 9 7 33 33 H 1.08998 * 111.00334 * 81.06841 * 11 10 9 34 34 H 1.08998 * 111.00123 * 204.91775 * 11 10 9 35 35 H 1.08999 * 110.72033 * 277.13568 * 12 11 10 36 36 H 1.09008 * 110.71732 * 153.86450 * 12 11 10 37 37 H 1.08998 * 109.49728 * 305.46064 * 17 15 13 38 38 H 1.09004 * 109.49413 * 65.56001 * 17 15 13 39 39 H 1.09006 * 109.45485 * 181.38529 * 18 17 15 40 40 H 1.08997 * 109.45913 * 301.35862 * 18 17 15 41 41 H 1.08998 * 109.50028 * 58.58001 * 19 18 17 42 42 H 1.08998 * 109.50255 * 178.67957 * 19 18 17 43 43 H 1.08994 * 109.73817 * 295.10974 * 20 19 18 44 44 H 1.09006 * 109.66096 * 174.55266 * 20 19 18 45 45 H 1.09002 * 109.46936 * 62.19985 * 24 22 21 46 46 H 1.08994 * 109.47006 * 302.19587 * 24 22 21 47 47 H 1.08002 * 127.04583 * 180.16126 * 27 26 25 48 48 H 1.07995 * 127.05017 * 179.72551 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5472 2.0177 -1.3989 5 1 1.4237 2.6664 0.6499 6 1 3.5221 1.4549 0.7490 7 6 2.0103 -1.2021 0.0005 8 1 1.5514 -2.0904 0.4091 9 7 3.2767 -1.2619 -0.5170 10 6 4.2881 -2.2859 -0.1975 11 6 5.6479 -1.6072 -0.4974 12 6 5.3047 -0.7635 -1.7535 13 6 3.8532 -0.3149 -1.4825 14 1 3.8458 0.6916 -1.0644 15 6 3.0483 -0.3435 -2.7834 16 1 1.9939 -0.1752 -2.5645 17 6 3.2202 -1.7035 -3.4673 18 6 2.5257 -1.6756 -4.8309 19 6 3.1733 -0.6061 -5.7133 20 6 2.9969 0.7698 -5.0530 21 7 3.5371 0.7059 -3.6883 22 6 4.4594 1.5963 -3.2723 23 8 4.9324 1.5044 -2.1594 24 6 4.9026 2.7064 -4.1902 25 7 5.9410 3.5011 -3.5294 26 7 5.7228 4.5791 -2.8631 27 6 6.8682 5.0306 -2.4047 28 6 7.8406 4.1348 -2.8553 29 7 7.1955 3.2186 -3.5413 30 1 -0.4850 0.8400 0.0004 31 1 4.2269 -2.5642 0.8546 32 1 4.1524 -3.1632 -0.8299 33 1 5.9565 -0.9683 0.3300 34 1 6.4137 -2.3494 -0.7226 35 1 5.3578 -1.3744 -2.6547 36 1 5.9667 0.0990 -1.8315 37 1 4.2816 -1.9106 -3.6037 38 1 2.7739 -2.4813 -2.8476 39 1 2.6255 -2.6501 -5.3091 40 1 1.4693 -1.4438 -4.6957 41 1 4.2352 -0.8235 -5.8285 42 1 2.6939 -0.6027 -6.6922 43 1 1.9384 1.0271 -5.0155 44 1 3.5381 1.5234 -5.6254 45 1 4.0512 3.3450 -4.4257 46 1 5.3021 2.2795 -5.1101 47 1 7.0261 5.9155 -1.8060 48 1 8.9045 4.1851 -2.6767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025236869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = 156.579378 kcal Electronic energy + Delta-G solvation = -31835.350226 eV Core-core repulsion = 27931.123607 eV Total energy + Delta-G solvation = -3904.226619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.49722 -40.73034 -37.62269 -36.92697 -33.87939 -32.71451 -32.44858 -32.36062 -31.39279 -29.81913 -28.47596 -27.30135 -24.82485 -24.15133 -23.14168 -22.84765 -21.97071 -21.07748 -20.28677 -19.88504 -18.65823 -17.69382 -17.33566 -16.52299 -15.86663 -15.55176 -15.51330 -15.13664 -14.99659 -14.77864 -14.42759 -14.18043 -13.90794 -13.47007 -13.38639 -13.12864 -13.03141 -12.83694 -12.52165 -11.86081 -11.80977 -11.60357 -11.46388 -11.43331 -11.05692 -10.89232 -10.77781 -10.75132 -10.55628 -10.33486 -10.28527 -10.26628 -10.10805 -9.77725 -9.64825 -9.64515 -9.27625 -8.77552 -8.43476 -8.05985 -6.84401 -5.92835 -3.18423 1.78472 2.18602 2.53873 2.65133 3.17529 3.49430 3.60846 3.75021 4.15340 4.33091 4.63638 4.67456 4.77463 4.81441 4.92099 5.06942 5.08524 5.15494 5.31112 5.33493 5.39914 5.45212 5.51084 5.58341 5.75442 5.78252 5.86177 5.92464 5.97316 6.01277 6.11497 6.19540 6.24293 6.30683 6.32993 6.37826 6.54577 6.59982 6.64113 6.72115 6.77394 6.96322 6.97950 7.01346 7.35453 7.56794 7.87259 8.35131 8.36273 8.37108 8.95161 9.76986 10.32236 11.22598 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005904 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.853172 B = 4741.435491 C = 5383.129473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.313 1.313 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.607 5.607 10 C 0.132 3.868 11 C -0.138 4.138 12 C -0.127 4.127 13 C 0.148 3.852 14 H 0.087 0.913 15 C 0.138 3.862 16 H 0.090 0.910 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.131 4.131 20 C 0.102 3.898 21 N -0.596 5.596 22 C 0.487 3.513 23 O -0.493 6.493 24 C 0.120 3.880 25 N -0.140 5.140 26 N -0.281 5.281 27 C -0.028 4.028 28 C -0.028 4.028 29 N -0.280 5.280 30 H 0.261 0.739 31 H 0.044 0.956 32 H 0.024 0.976 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.196 0.804 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.638 4.018 -14.263 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.242 1.242 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.105 0.895 9 N -0.333 5.333 10 C 0.007 3.993 11 C -0.176 4.176 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.104 0.896 15 C 0.035 3.965 16 H 0.108 0.892 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.169 4.169 20 C -0.021 4.021 21 N -0.330 5.330 22 C 0.272 3.728 23 O -0.368 6.368 24 C -0.004 4.004 25 N -0.040 5.040 26 N -0.122 5.122 27 C -0.211 4.211 28 C -0.211 4.211 29 N -0.120 5.120 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.213 0.787 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.642 3.281 -14.231 18.070 hybrid contribution 0.980 1.555 0.491 1.903 sum 11.622 4.836 -13.740 18.635 Atomic orbital electron populations 1.69907 1.05628 1.26449 1.52689 1.24990 0.94978 0.97196 0.99932 0.87017 0.78817 0.84443 0.78236 1.20721 1.24177 1.20761 1.18600 0.86816 0.95358 1.36061 0.89474 1.45006 1.11927 1.29898 1.46447 1.21651 0.87715 0.91990 0.97993 1.22783 0.97462 0.98845 0.98529 1.23097 0.97347 0.99170 0.96843 1.21919 0.90173 0.95921 0.87695 0.89645 1.22022 1.00629 0.84513 0.89374 0.89207 1.21968 1.00501 0.98177 0.95463 1.21547 1.00283 0.98072 0.95973 1.21964 1.01537 0.94763 0.98631 1.21898 0.99950 0.98046 0.82228 1.48139 1.40531 1.30754 1.13612 1.20205 0.80868 0.83325 0.88422 1.90774 1.54277 1.72088 1.19634 1.21845 0.89853 0.93168 0.95530 1.47341 1.04068 1.16156 1.36409 1.74078 1.27511 1.00800 1.09802 1.24755 0.88098 1.03437 1.04785 1.24732 1.01850 0.93401 1.01122 1.74011 0.92323 1.24691 1.21018 0.92953 0.93798 0.95830 0.92114 0.92419 0.92153 0.89521 0.91777 0.89747 0.92087 0.91600 0.91613 0.90979 0.90692 0.90612 0.85004 0.85211 0.78717 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.97 55.49 0.78 -27.00 16 2 C 0.03 0.83 4.59 -17.43 -0.08 0.75 16 3 Si 0.88 24.63 23.85 -169.99 -4.05 20.58 16 4 H -0.28 -7.49 5.53 56.52 0.31 -7.17 16 5 H -0.31 -8.94 7.11 56.52 0.40 -8.54 16 6 H -0.28 -8.32 7.05 56.52 0.40 -7.92 16 7 C -0.24 -6.88 10.13 -15.06 -0.15 -7.03 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 9 N -0.61 -15.04 2.56 -162.57 -0.42 -15.45 16 10 C 0.13 2.79 7.23 -2.53 -0.02 2.77 16 11 C -0.14 -2.62 7.08 -24.58 -0.17 -2.80 16 12 C -0.13 -2.52 5.13 -24.90 -0.13 -2.65 16 13 C 0.15 3.37 1.07 -66.95 -0.07 3.29 16 14 H 0.09 2.22 1.22 -52.50 -0.06 2.15 16 15 C 0.14 2.75 2.01 -67.60 -0.14 2.61 16 16 H 0.09 2.15 6.72 -51.93 -0.35 1.80 16 17 C -0.12 -2.07 4.96 -26.61 -0.13 -2.20 16 18 C -0.12 -1.58 5.88 -26.69 -0.16 -1.74 16 19 C -0.13 -1.35 6.10 -26.39 -0.16 -1.51 16 20 C 0.10 1.15 6.36 -3.49 -0.02 1.13 16 21 N -0.60 -9.72 2.94 -164.96 -0.49 -10.21 16 22 C 0.49 8.41 6.62 -10.98 -0.07 8.34 16 23 O -0.49 -10.58 8.91 5.56 0.05 -10.53 16 24 C 0.12 1.56 5.42 -5.19 -0.03 1.54 16 25 N -0.14 -2.15 3.44 -11.66 -0.04 -2.19 16 26 N -0.28 -4.51 12.05 30.68 0.37 -4.14 16 27 C -0.03 -0.36 12.20 -17.21 -0.21 -0.57 16 28 C -0.03 -0.35 12.20 -17.21 -0.21 -0.56 16 29 N -0.28 -4.20 12.05 30.67 0.37 -3.83 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.09 5.17 -51.93 -0.27 0.82 16 36 H 0.09 1.83 5.63 -51.85 -0.29 1.54 16 37 H 0.06 1.03 5.51 -51.93 -0.29 0.75 16 38 H 0.08 1.61 7.99 -51.93 -0.42 1.19 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 45 H 0.13 1.42 8.10 -51.93 -0.42 1.00 16 46 H 0.13 1.20 7.47 -51.93 -0.39 0.82 16 47 H 0.20 1.72 8.06 -52.49 -0.42 1.29 16 48 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -36.91 355.95 -6.91 -43.82 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.09 Total: 2.21 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.75 Total: 1.38 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.57 Total: -62.82 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.05 Total: -10.53 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.05 Total: 20.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.91 -6.91 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025236869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.404 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds