Wall clock time and date at job start Tue Mar 31 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48494 * 109.46953 * 267.65309 * 3 2 1 5 5 H 1.48496 * 109.47234 * 27.65703 * 3 2 1 6 6 H 1.48503 * 109.46919 * 147.65806 * 3 2 1 7 7 C 1.38810 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99971 * 334.12536 * 7 2 1 9 9 N 1.36940 * 120.00287 * 154.12187 * 7 2 1 10 10 C 1.47429 * 125.64831 * 158.15336 * 9 7 2 11 11 C 1.54910 * 104.82825 * 204.16587 * 10 9 7 12 12 C 1.55155 * 101.58267 * 322.99116 * 11 10 9 13 13 C 1.47014 * 125.64618 * 338.20236 * 9 7 2 14 14 H 1.08993 * 109.88939 * 59.32528 * 13 9 7 15 15 C 1.53005 * 109.87945 * 298.31606 * 13 9 7 16 16 H 1.09000 * 109.58733 * 53.59869 * 15 13 9 17 17 C 1.53192 * 109.70449 * 293.23897 * 15 13 9 18 18 C 1.53044 * 109.30972 * 185.50724 * 17 15 13 19 19 C 1.53034 * 109.53992 * 61.36984 * 18 17 15 20 20 C 1.53627 * 109.23798 * 298.50999 * 19 18 17 21 21 N 1.46915 * 108.54597 * 54.85572 * 20 19 18 22 22 C 1.34779 * 120.63264 * 126.36491 * 21 20 19 23 23 O 1.21279 * 120.00519 * 182.61470 * 22 21 20 24 24 C 1.50708 * 119.99737 * 2.62396 * 22 21 20 25 25 N 1.46502 * 109.47039 * 182.19868 * 24 22 21 26 26 N 1.28597 * 124.61917 * 265.37156 * 25 24 22 27 27 C 1.31380 * 108.71768 * 179.83228 * 26 25 24 28 28 C 1.39677 * 105.90077 * 0.40612 * 27 26 25 29 29 N 1.28594 * 124.61708 * 85.66599 * 25 24 22 30 30 H 0.96996 * 119.99952 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.36641 * 323.00147 * 10 9 7 32 32 H 1.08998 * 110.36287 * 85.21902 * 10 9 7 33 33 H 1.08998 * 111.00334 * 81.06841 * 11 10 9 34 34 H 1.08998 * 111.00123 * 204.91775 * 11 10 9 35 35 H 1.08999 * 110.72033 * 277.13568 * 12 11 10 36 36 H 1.09008 * 110.71732 * 153.86450 * 12 11 10 37 37 H 1.08998 * 109.49728 * 305.46064 * 17 15 13 38 38 H 1.09004 * 109.49413 * 65.56001 * 17 15 13 39 39 H 1.09006 * 109.45485 * 181.38529 * 18 17 15 40 40 H 1.08997 * 109.45913 * 301.35862 * 18 17 15 41 41 H 1.08998 * 109.50028 * 58.58001 * 19 18 17 42 42 H 1.08998 * 109.50255 * 178.67957 * 19 18 17 43 43 H 1.08994 * 109.73817 * 295.10974 * 20 19 18 44 44 H 1.09006 * 109.66096 * 174.55266 * 20 19 18 45 45 H 1.09002 * 109.46936 * 62.19985 * 24 22 21 46 46 H 1.08994 * 109.47006 * 302.19587 * 24 22 21 47 47 H 1.08002 * 127.04583 * 180.16126 * 27 26 25 48 48 H 1.07995 * 127.05017 * 179.72551 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5472 2.0177 -1.3989 5 1 1.4237 2.6664 0.6499 6 1 3.5221 1.4549 0.7490 7 6 2.0103 -1.2021 0.0005 8 1 1.5514 -2.0904 0.4091 9 7 3.2767 -1.2619 -0.5170 10 6 4.2881 -2.2859 -0.1975 11 6 5.6479 -1.6072 -0.4974 12 6 5.3047 -0.7635 -1.7535 13 6 3.8532 -0.3149 -1.4825 14 1 3.8458 0.6916 -1.0644 15 6 3.0483 -0.3435 -2.7834 16 1 1.9939 -0.1752 -2.5645 17 6 3.2202 -1.7035 -3.4673 18 6 2.5257 -1.6756 -4.8309 19 6 3.1733 -0.6061 -5.7133 20 6 2.9969 0.7698 -5.0530 21 7 3.5371 0.7059 -3.6883 22 6 4.4594 1.5963 -3.2723 23 8 4.9324 1.5044 -2.1594 24 6 4.9026 2.7064 -4.1902 25 7 5.9410 3.5011 -3.5294 26 7 5.7228 4.5791 -2.8631 27 6 6.8682 5.0306 -2.4047 28 6 7.8406 4.1348 -2.8553 29 7 7.1955 3.2186 -3.5413 30 1 -0.4850 0.8400 0.0004 31 1 4.2269 -2.5642 0.8546 32 1 4.1524 -3.1632 -0.8299 33 1 5.9565 -0.9683 0.3300 34 1 6.4137 -2.3494 -0.7226 35 1 5.3578 -1.3744 -2.6547 36 1 5.9667 0.0990 -1.8315 37 1 4.2816 -1.9106 -3.6037 38 1 2.7739 -2.4813 -2.8476 39 1 2.6255 -2.6501 -5.3091 40 1 1.4693 -1.4438 -4.6957 41 1 4.2352 -0.8235 -5.8285 42 1 2.6939 -0.6027 -6.6922 43 1 1.9384 1.0271 -5.0155 44 1 3.5381 1.5234 -5.6254 45 1 4.0512 3.3450 -4.4257 46 1 5.3021 2.2795 -5.1101 47 1 7.0261 5.9155 -1.8060 48 1 8.9045 4.1851 -2.6767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025236869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:44 Heat of formation + Delta-G solvation = 129.332225 kcal Electronic energy + Delta-G solvation = -31836.531751 eV Core-core repulsion = 27931.123607 eV Total energy + Delta-G solvation = -3905.408144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.48545 -42.09778 -39.18321 -38.21707 -35.02347 -34.60385 -33.83449 -33.38223 -32.69377 -31.80587 -29.53459 -28.71523 -26.44794 -25.73680 -24.48374 -23.81185 -23.15125 -22.39592 -21.66426 -21.57610 -19.92227 -19.29642 -18.44775 -17.91615 -17.48534 -17.01634 -16.92592 -16.67622 -16.30611 -15.88344 -15.44946 -15.40299 -15.21762 -15.10969 -14.90818 -14.65274 -14.33305 -14.16633 -13.86299 -13.64508 -13.22933 -13.14218 -12.98099 -12.89488 -12.56917 -12.53622 -12.24426 -12.03250 -11.99493 -11.79206 -11.69336 -11.65788 -11.49507 -11.32481 -11.30977 -11.05629 -10.84315 -10.56067 -10.02326 -9.49900 -8.86326 -8.26376 -5.44089 0.74277 1.19276 1.25071 1.27645 1.38027 1.48605 1.62173 1.99836 2.32981 2.98429 3.22807 3.30781 3.45404 3.81135 3.83951 3.89024 3.92493 3.98457 4.04557 4.10315 4.15466 4.16178 4.28431 4.39783 4.43495 4.56018 4.63708 4.68923 4.70106 4.82699 4.93327 4.96837 5.03258 5.07306 5.10575 5.15542 5.18619 5.22255 5.29993 5.34290 5.36762 5.50550 5.53730 5.65472 5.69053 5.76999 6.06629 6.37381 6.78510 7.09204 7.37530 7.56457 8.17777 8.93659 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005904 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.853172 B = 4741.435491 C = 5383.129473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.325 1.325 6 H -0.310 1.310 7 C -0.221 4.221 8 H 0.063 0.937 9 N -0.625 5.625 10 C 0.126 3.874 11 C -0.128 4.128 12 C -0.112 4.112 13 C 0.141 3.859 14 H 0.057 0.943 15 C 0.146 3.854 16 H 0.039 0.961 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.121 4.121 20 C 0.091 3.909 21 N -0.597 5.597 22 C 0.477 3.523 23 O -0.542 6.542 24 C 0.123 3.877 25 N -0.154 5.154 26 N -0.323 5.323 27 C -0.028 4.028 28 C -0.024 4.024 29 N -0.302 5.302 30 H 0.260 0.740 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.153 0.847 46 H 0.172 0.828 47 H 0.227 0.773 48 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.259 4.281 -17.510 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.205 4.205 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.256 1.256 6 H -0.239 1.239 7 C -0.350 4.350 8 H 0.081 0.919 9 N -0.351 5.351 10 C 0.001 3.999 11 C -0.167 4.167 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.074 0.926 15 C 0.041 3.959 16 H 0.057 0.943 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.030 4.030 21 N -0.330 5.330 22 C 0.264 3.736 23 O -0.420 6.420 24 C 0.000 4.000 25 N -0.054 5.054 26 N -0.163 5.163 27 C -0.211 4.211 28 C -0.207 4.207 29 N -0.143 5.143 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.170 0.830 46 H 0.189 0.811 47 H 0.244 0.756 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.278 3.539 -17.547 22.288 hybrid contribution 0.236 1.428 1.561 2.129 sum 13.514 4.967 -15.986 21.514 Atomic orbital electron populations 1.69965 1.06457 1.26632 1.55532 1.25257 0.95237 0.98707 1.01278 0.86086 0.75968 0.82315 0.78031 1.19607 1.25568 1.23880 1.18553 0.88362 0.94145 1.33964 0.91910 1.45180 1.11412 1.31151 1.47403 1.21838 0.88074 0.91882 0.98065 1.22747 0.97040 0.99179 0.97699 1.22949 0.94966 0.99126 0.97869 1.21946 0.92330 0.93789 0.88342 0.92590 1.21496 0.97158 0.87528 0.89711 0.94262 1.21838 1.01316 0.95103 0.96867 1.21543 0.99100 1.00581 0.94477 1.21949 1.02318 0.92477 0.99139 1.22333 1.00323 1.00390 0.79999 1.48213 1.40252 1.29640 1.14916 1.21014 0.80244 0.83831 0.88500 1.90749 1.56087 1.73361 1.21847 1.22040 0.90718 0.91910 0.95338 1.47526 1.04418 1.16340 1.37117 1.74038 1.29257 1.01873 1.11142 1.25417 0.87434 1.04221 1.04044 1.25429 1.03439 0.92230 0.99633 1.73971 0.92565 1.25660 1.22066 0.93103 0.94433 0.93944 0.93720 0.88335 0.90049 0.90325 0.90545 0.92907 0.90031 0.93305 0.90351 0.87517 0.91106 0.86126 0.82966 0.81100 0.75624 0.75090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.21 13.97 21.65 0.30 -59.91 16 2 C -0.01 -0.55 4.59 84.86 0.39 -0.16 16 3 Si 0.94 54.18 23.85 68.60 1.64 55.82 16 4 H -0.27 -14.75 5.53 99.48 0.55 -14.20 16 5 H -0.33 -19.07 7.11 99.48 0.71 -18.36 16 6 H -0.31 -19.10 7.05 99.48 0.70 -18.40 16 7 C -0.22 -13.16 10.13 84.03 0.85 -12.31 16 8 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 9 N -0.62 -31.74 2.56 -668.26 -1.71 -33.45 16 10 C 0.13 5.29 7.23 86.85 0.63 5.91 16 11 C -0.13 -4.70 7.08 31.99 0.23 -4.48 16 12 C -0.11 -4.29 5.13 31.78 0.16 -4.13 16 13 C 0.14 6.44 1.07 45.34 0.05 6.48 16 14 H 0.06 2.99 1.22 -16.31 -0.02 2.97 16 15 C 0.15 5.83 2.01 44.98 0.09 5.92 16 16 H 0.04 1.96 6.72 -2.39 -0.02 1.95 16 17 C -0.11 -3.69 4.96 30.67 0.15 -3.54 16 18 C -0.12 -2.85 5.88 30.62 0.18 -2.67 16 19 C -0.12 -1.96 6.10 30.82 0.19 -1.78 16 20 C 0.09 1.74 6.36 86.51 0.55 2.29 16 21 N -0.60 -18.49 2.94 -794.19 -2.34 -20.83 16 22 C 0.48 15.73 6.62 87.66 0.58 16.31 16 23 O -0.54 -23.10 8.91 -3.03 -0.03 -23.13 16 24 C 0.12 2.84 5.42 85.64 0.46 3.31 16 25 N -0.15 -4.44 3.44 -190.79 -0.66 -5.10 16 26 N -0.32 -9.87 12.05 -56.86 -0.69 -10.56 16 27 C -0.03 -0.66 12.20 85.11 1.04 0.37 16 28 C -0.02 -0.54 12.20 85.11 1.04 0.50 16 29 N -0.30 -8.36 12.05 -56.87 -0.69 -9.05 16 30 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.08 2.72 5.17 -2.39 -0.01 2.71 16 36 H 0.08 3.24 5.63 -6.14 -0.03 3.21 16 37 H 0.08 2.27 5.51 -2.39 -0.01 2.26 16 38 H 0.05 2.03 7.99 -2.38 -0.02 2.01 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.12 1.24 5.93 -2.38 -0.01 1.23 16 45 H 0.15 2.81 8.10 -2.39 -0.02 2.79 16 46 H 0.17 2.37 7.47 -2.39 -0.02 2.35 16 47 H 0.23 3.40 8.06 -2.91 -0.02 3.37 16 48 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -87.07 355.95 3.20 -83.87 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.78 Total: 10.30 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.59 Total: 12.04 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -5.77 Total: -138.90 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.03 Total: -23.13 kcal Atomic # 14 Polarization: 54.18 SS G_CDS: 1.64 Total: 55.82 kcal Total: -87.07 3.20 -83.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025236869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.198 kcal (2) G-P(sol) polarization free energy of solvation -87.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds