Wall clock time and date at job start Tue Mar 31 2020 18:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.46877 * 269.99908 * 3 2 1 5 5 H 1.48495 * 109.46921 * 29.99854 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99677 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21599 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.47519 * 119.99981 * 180.02562 * 15 14 13 18 18 C 1.36602 * 125.76671 * 179.71673 * 17 15 14 19 19 N 1.34812 * 106.83516 * 179.89659 * 18 17 15 20 20 C 1.46501 * 126.59315 * 180.10366 * 19 18 17 21 21 C 1.53780 * 113.61423 * 14.41707 * 20 19 18 22 22 C 1.53957 * 87.01978 * 220.04442 * 21 20 19 23 23 C 1.53778 * 113.61919 * 276.80765 * 20 19 18 24 24 N 1.40209 * 106.81579 * 0.35913 * 19 18 17 25 25 N 1.28764 * 108.36086 * 359.77006 * 24 19 18 26 26 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 27 27 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 28 28 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 31 31 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 36 36 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 37 37 H 1.07994 * 126.57943 * 0.04209 * 18 17 15 38 38 H 1.09011 * 112.84963 * 145.60614 * 20 19 18 39 39 H 1.08995 * 113.61383 * 334.56571 * 21 20 19 40 40 H 1.09001 * 113.61802 * 105.46439 * 21 20 19 41 41 H 1.09006 * 113.53118 * 270.80860 * 22 21 20 42 42 H 1.08993 * 113.74409 * 139.94355 * 22 21 20 43 43 H 1.09002 * 113.61624 * 254.53022 * 23 20 19 44 44 H 1.08993 * 113.61372 * 25.42786 * 23 20 19 45 45 H 1.09000 * 109.47486 * 180.02562 * 26 13 12 46 46 H 1.09002 * 109.46716 * 60.00091 * 26 13 12 47 47 H 1.09002 * 109.47153 * 179.97438 * 27 10 9 48 48 H 1.09001 * 109.47289 * 299.99924 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0503 -6.7956 3.8781 17 6 -2.1930 -6.3512 4.3456 18 6 -2.3316 -7.1160 5.4689 19 7 -3.6045 -6.9680 5.8875 20 6 -4.2171 -7.5976 7.0599 21 6 -3.1968 -8.2109 8.0334 22 6 -4.1793 -9.3848 8.1972 23 6 -4.7157 -9.0290 6.8006 24 7 -4.2311 -6.1004 4.9816 25 7 -3.3706 -5.7572 4.0874 26 6 1.1451 -4.1838 2.2669 27 6 2.4229 -4.0350 1.4385 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0016 30 1 2.9682 -3.5508 -0.5885 31 1 1.7251 -5.6964 -0.6064 32 1 0.9203 -4.4829 -1.6305 33 1 -0.6424 -3.9571 0.2215 34 1 -0.7225 -5.6820 -0.2117 35 1 0.8124 -6.2233 1.6584 36 1 -1.7625 -4.9523 2.1878 37 1 -1.5673 -7.7210 5.9339 38 1 -4.9552 -6.9594 7.5459 39 1 -2.2560 -8.4917 7.5602 40 1 -3.0564 -7.6276 8.9435 41 1 -4.9066 -9.2356 8.9954 42 1 -3.6944 -10.3598 8.2433 43 1 -5.7998 -9.1053 6.7168 44 1 -4.1910 -9.5339 5.9896 45 1 1.4055 -4.4534 3.2905 46 1 0.6001 -3.2398 2.2669 47 1 2.9675 -4.9792 1.4386 48 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026495902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:28 Heat of formation + Delta-G solvation = 82.589718 kcal Electronic energy + Delta-G solvation = -28431.855456 eV Core-core repulsion = 24524.420405 eV Total energy + Delta-G solvation = -3907.435051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46804 -39.75367 -39.23310 -37.84437 -34.59759 -33.44817 -32.69315 -31.21262 -30.21174 -30.07993 -27.70167 -26.53635 -26.40407 -23.97317 -23.37519 -22.63887 -22.13188 -21.43077 -20.31393 -20.08962 -18.89344 -18.10174 -17.15771 -16.60362 -16.48323 -16.07678 -15.87588 -14.97726 -14.88861 -14.52463 -14.40381 -14.00176 -13.79166 -13.59730 -13.42516 -13.27683 -13.13714 -12.77058 -12.55504 -12.27163 -12.18566 -11.87852 -11.68831 -11.57873 -11.51261 -11.40241 -11.12483 -10.88109 -10.74657 -10.62497 -10.48765 -10.32694 -10.13053 -10.09341 -9.77359 -9.62577 -9.45467 -9.43611 -8.82415 -8.67086 -6.86554 -5.70078 -2.97203 0.93923 1.65111 1.75443 3.24133 3.35565 3.47640 3.52792 3.53169 3.54481 3.70136 3.99518 4.04007 4.06533 4.50622 4.62471 4.65706 4.81179 4.88065 4.93769 5.05854 5.15882 5.17360 5.21436 5.27786 5.31165 5.51087 5.53950 5.64303 5.67280 5.79586 5.87020 5.92104 6.06598 6.12138 6.14768 6.18133 6.28185 6.42139 6.57785 6.68950 6.77322 6.85904 6.97648 7.12057 7.17127 7.60523 7.77431 7.87690 8.31698 8.49472 9.60549 10.19841 10.54590 11.52793 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.002278 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.123855 B =12290.685694 C =12931.912116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.117 4.117 12 C -0.124 4.124 13 C 0.150 3.850 14 N -0.704 5.704 15 C 0.603 3.397 16 O -0.545 6.545 17 C -0.097 4.097 18 C 0.090 3.910 19 N -0.352 5.352 20 C 0.122 3.878 21 C -0.148 4.148 22 C -0.135 4.135 23 C -0.145 4.145 24 N -0.066 5.066 25 N -0.202 5.202 26 C -0.119 4.119 27 C -0.129 4.129 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.201 0.799 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 -21.777 15.305 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.047 3.953 14 N -0.353 5.353 15 C 0.387 3.613 16 O -0.422 6.422 17 C -0.236 4.236 18 C -0.067 4.067 19 N -0.137 5.137 20 C 0.020 3.980 21 C -0.186 4.186 22 C -0.173 4.173 23 C -0.184 4.184 24 N -0.045 5.045 25 N -0.076 5.076 26 C -0.157 4.157 27 C -0.170 4.170 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.218 0.782 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.267 -21.322 15.166 27.759 hybrid contribution 0.521 0.777 0.387 1.013 sum -8.745 -20.545 15.553 27.212 Atomic orbital electron populations 1.69645 1.05011 1.25489 1.58113 1.24703 0.95477 0.97521 1.03399 0.86234 0.78657 0.84185 0.77402 1.21886 1.21934 1.20892 1.19252 0.90978 0.84246 1.42026 0.91298 1.42477 1.05722 0.99602 1.88468 1.20259 0.94290 0.86456 0.92905 1.21723 0.95772 0.98866 0.99217 1.21747 0.98895 1.02134 0.93421 1.21115 0.84431 0.99687 0.90101 1.45966 1.15399 1.47347 1.26599 1.16733 0.85069 0.79251 0.80266 1.90789 1.32975 1.48337 1.70076 1.21573 0.95301 1.06117 1.00656 1.23207 0.88263 0.99559 0.95679 1.50569 1.08481 1.33148 1.21478 1.23435 0.97911 0.93761 0.82895 1.23514 0.98169 0.97609 0.99329 1.22743 0.98763 0.98924 0.96908 1.23448 1.02849 0.93436 0.98660 1.82005 1.17066 1.07617 0.97846 1.74670 0.99443 1.16266 1.17216 1.21753 0.96930 0.98903 0.98139 1.22100 0.96385 0.99636 0.98920 0.93633 0.78145 0.93389 0.92318 0.91470 0.90324 0.92283 0.89954 0.75691 0.78203 0.84803 0.88507 0.89246 0.88993 0.89722 0.89587 0.88973 0.93105 0.90299 0.93680 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.58 4.28 -53.42 -0.23 -17.81 16 10 C 0.17 3.36 3.10 -67.93 -0.21 3.15 16 11 C -0.12 -1.91 5.61 -26.73 -0.15 -2.06 16 12 C -0.12 -1.94 5.22 -26.73 -0.14 -2.08 16 13 C 0.15 2.41 2.45 -67.93 -0.17 2.24 16 14 N -0.70 -10.77 5.07 -54.85 -0.28 -11.05 16 15 C 0.60 9.36 7.78 -12.48 -0.10 9.26 16 16 O -0.54 -9.49 16.53 5.28 0.09 -9.41 16 17 C -0.10 -1.33 6.99 -83.55 -0.58 -1.91 16 18 C 0.09 0.93 10.49 -16.83 -0.18 0.75 16 19 N -0.35 -3.38 3.83 -53.77 -0.21 -3.59 16 20 C 0.12 0.67 5.04 -67.12 -0.34 0.33 16 21 C -0.15 -0.51 7.47 -25.83 -0.19 -0.70 16 22 C -0.14 -0.33 8.09 -25.83 -0.21 -0.54 16 23 C -0.15 -0.60 7.88 -25.92 -0.20 -0.81 16 24 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 25 N -0.20 -2.95 12.04 32.84 0.40 -2.56 16 26 C -0.12 -2.18 5.34 -26.73 -0.14 -2.32 16 27 C -0.13 -2.39 5.61 -26.73 -0.15 -2.54 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.38 9.87 6.06 -40.82 -0.25 9.62 16 30 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.40 6.51 -51.93 -0.34 1.06 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 36 H 0.41 5.98 8.29 -40.82 -0.34 5.65 16 37 H 0.20 1.47 6.79 -52.49 -0.36 1.12 16 38 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.10 0.33 6.39 -51.93 -0.33 0.00 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.68 7.60 -51.93 -0.39 1.29 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -33.55 387.10 -8.31 -41.86 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.44 Total: 10.90 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.01 Total: -4.34 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 1.24 Total: -62.47 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.55 -8.31 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026495902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.450 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds