Wall clock time and date at job start Tue Mar 31 2020 18:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.46877 * 269.99908 * 3 2 1 5 5 H 1.48495 * 109.46921 * 29.99854 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99677 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21599 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.47519 * 119.99981 * 180.02562 * 15 14 13 18 18 C 1.36602 * 125.76671 * 179.71673 * 17 15 14 19 19 N 1.34812 * 106.83516 * 179.89659 * 18 17 15 20 20 C 1.46501 * 126.59315 * 180.10366 * 19 18 17 21 21 C 1.53780 * 113.61423 * 14.41707 * 20 19 18 22 22 C 1.53957 * 87.01978 * 220.04442 * 21 20 19 23 23 C 1.53778 * 113.61919 * 276.80765 * 20 19 18 24 24 N 1.40209 * 106.81579 * 0.35913 * 19 18 17 25 25 N 1.28764 * 108.36086 * 359.77006 * 24 19 18 26 26 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 27 27 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 28 28 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 31 31 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 36 36 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 37 37 H 1.07994 * 126.57943 * 0.04209 * 18 17 15 38 38 H 1.09011 * 112.84963 * 145.60614 * 20 19 18 39 39 H 1.08995 * 113.61383 * 334.56571 * 21 20 19 40 40 H 1.09001 * 113.61802 * 105.46439 * 21 20 19 41 41 H 1.09006 * 113.53118 * 270.80860 * 22 21 20 42 42 H 1.08993 * 113.74409 * 139.94355 * 22 21 20 43 43 H 1.09002 * 113.61624 * 254.53022 * 23 20 19 44 44 H 1.08993 * 113.61372 * 25.42786 * 23 20 19 45 45 H 1.09000 * 109.47486 * 180.02562 * 26 13 12 46 46 H 1.09002 * 109.46716 * 60.00091 * 26 13 12 47 47 H 1.09002 * 109.47153 * 179.97438 * 27 10 9 48 48 H 1.09001 * 109.47289 * 299.99924 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0503 -6.7956 3.8781 17 6 -2.1930 -6.3512 4.3456 18 6 -2.3316 -7.1160 5.4689 19 7 -3.6045 -6.9680 5.8875 20 6 -4.2171 -7.5976 7.0599 21 6 -3.1968 -8.2109 8.0334 22 6 -4.1793 -9.3848 8.1972 23 6 -4.7157 -9.0290 6.8006 24 7 -4.2311 -6.1004 4.9816 25 7 -3.3706 -5.7572 4.0874 26 6 1.1451 -4.1838 2.2669 27 6 2.4229 -4.0350 1.4385 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0016 30 1 2.9682 -3.5508 -0.5885 31 1 1.7251 -5.6964 -0.6064 32 1 0.9203 -4.4829 -1.6305 33 1 -0.6424 -3.9571 0.2215 34 1 -0.7225 -5.6820 -0.2117 35 1 0.8124 -6.2233 1.6584 36 1 -1.7625 -4.9523 2.1878 37 1 -1.5673 -7.7210 5.9339 38 1 -4.9552 -6.9594 7.5459 39 1 -2.2560 -8.4917 7.5602 40 1 -3.0564 -7.6276 8.9435 41 1 -4.9066 -9.2356 8.9954 42 1 -3.6944 -10.3598 8.2433 43 1 -5.7998 -9.1053 6.7168 44 1 -4.1910 -9.5339 5.9896 45 1 1.4055 -4.4534 3.2905 46 1 0.6001 -3.2398 2.2669 47 1 2.9675 -4.9792 1.4386 48 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026495902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:27 Heat of formation + Delta-G solvation = 59.944729 kcal Electronic energy + Delta-G solvation = -28432.837417 eV Core-core repulsion = 24524.420405 eV Total energy + Delta-G solvation = -3908.417011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.35172 -40.94270 -39.77975 -39.23738 -36.13428 -34.64932 -34.07759 -32.42967 -31.69521 -31.59820 -29.24820 -27.05151 -26.82466 -25.65581 -24.82053 -23.53831 -23.36146 -22.71269 -21.44427 -20.56869 -20.17713 -19.27390 -19.10109 -17.54211 -17.31840 -17.17310 -16.55671 -16.45440 -16.19801 -15.80760 -15.63290 -15.40830 -15.24383 -15.06856 -14.46317 -14.19296 -13.78611 -13.66809 -13.52626 -13.48436 -13.27205 -13.24187 -13.01195 -12.91639 -12.84079 -12.60705 -12.20412 -12.06413 -12.05095 -11.87006 -11.85943 -11.68266 -11.50825 -11.26587 -11.19791 -11.14808 -11.06457 -10.77652 -10.41711 -9.97601 -8.90507 -7.88503 -5.13870 0.09608 0.57861 1.04885 1.47658 1.48613 1.56621 2.10585 2.22300 2.59844 3.06000 3.15922 3.37150 3.44597 3.60120 3.72887 3.75042 3.83155 3.87480 3.94590 4.08932 4.14409 4.19042 4.41376 4.43780 4.46573 4.58183 4.62951 4.68330 4.70141 4.72164 4.75830 4.86599 4.90122 4.93622 5.03741 5.05880 5.16127 5.25571 5.27637 5.34651 5.35811 5.49765 5.50588 5.56356 5.64690 5.66098 6.34921 6.42597 6.87083 7.11426 7.41301 8.21436 8.43933 9.35049 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.002278 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.123855 B =12290.685694 C =12931.912116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.079 4.079 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.229 4.229 8 H 0.073 0.927 9 N -0.729 5.729 10 C 0.163 3.837 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.160 3.840 14 N -0.705 5.705 15 C 0.605 3.395 16 O -0.566 6.566 17 C -0.124 4.124 18 C 0.108 3.892 19 N -0.336 5.336 20 C 0.101 3.899 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.145 4.145 24 N -0.091 5.091 25 N -0.229 5.229 26 C -0.110 4.110 27 C -0.122 4.122 28 H 0.248 0.752 29 H 0.374 0.626 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.409 0.591 37 H 0.232 0.768 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.076 0.924 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -24.156 16.543 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.362 4.362 8 H 0.091 0.909 9 N -0.370 5.370 10 C 0.054 3.946 11 C -0.148 4.148 12 C -0.154 4.154 13 C 0.056 3.944 14 N -0.353 5.353 15 C 0.390 3.610 16 O -0.444 6.444 17 C -0.264 4.264 18 C -0.050 4.050 19 N -0.120 5.120 20 C 0.002 3.998 21 C -0.182 4.182 22 C -0.160 4.160 23 C -0.183 4.183 24 N -0.071 5.071 25 N -0.102 5.102 26 C -0.148 4.148 27 C -0.163 4.163 28 H 0.056 0.944 29 H 0.208 0.792 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.248 0.752 38 H 0.161 0.839 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.728 -23.736 16.416 30.151 hybrid contribution 0.350 1.393 0.104 1.440 sum -8.379 -22.343 16.520 29.023 Atomic orbital electron populations 1.69801 1.06381 1.25605 1.60285 1.25442 0.96289 1.00678 1.04660 0.85248 0.77669 0.80273 0.77270 1.21570 1.22711 1.19781 1.19619 0.91331 0.85489 1.39719 0.90942 1.42655 1.05494 1.00597 1.88298 1.20528 0.94533 0.85689 0.93819 1.21660 0.95557 0.98899 0.98653 1.21670 0.98828 1.01623 0.93324 1.20959 0.84458 0.98879 0.90095 1.45951 1.15177 1.47436 1.26778 1.16933 0.85445 0.78600 0.80027 1.90761 1.33844 1.49225 1.70611 1.21505 0.94706 1.08072 1.02110 1.23621 0.88871 0.98227 0.94309 1.50904 1.08130 1.31598 1.21382 1.24078 0.99289 0.94358 0.82092 1.23575 0.97950 0.97738 0.98896 1.22732 0.98470 0.98884 0.95901 1.23464 1.03083 0.92112 0.99681 1.81911 1.17486 1.09003 0.98656 1.74637 0.99987 1.17251 1.18289 1.21622 0.97008 0.98007 0.98206 1.21988 0.96255 1.00374 0.97655 0.94366 0.79201 0.93518 0.88941 0.91685 0.92999 0.89671 0.89015 0.75504 0.75155 0.83877 0.88216 0.88216 0.87611 0.88818 0.89215 0.89825 0.93582 0.94006 0.90555 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.23 -12.77 9.93 84.03 0.83 -11.93 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.73 -36.15 4.28 -322.94 -1.38 -37.53 16 10 C 0.16 6.27 3.10 44.99 0.14 6.41 16 11 C -0.11 -3.35 5.61 30.60 0.17 -3.18 16 12 C -0.12 -3.54 5.22 30.59 0.16 -3.38 16 13 C 0.16 4.99 2.45 44.99 0.11 5.10 16 14 N -0.70 -21.57 5.07 -445.71 -2.26 -23.83 16 15 C 0.60 18.56 7.78 86.69 0.67 19.23 16 16 O -0.57 -19.13 16.53 -4.03 -0.07 -19.20 16 17 C -0.12 -3.35 6.99 40.82 0.29 -3.07 16 18 C 0.11 2.08 10.49 83.85 0.88 2.96 16 19 N -0.34 -6.07 3.83 -324.03 -1.24 -7.31 16 20 C 0.10 0.93 5.04 45.52 0.23 1.15 16 21 C -0.14 -0.59 7.47 31.18 0.23 -0.35 16 22 C -0.12 -0.22 8.09 31.18 0.25 0.03 16 23 C -0.14 -0.91 7.88 31.12 0.25 -0.66 16 24 N -0.09 -2.40 13.78 37.02 0.51 -1.89 16 25 N -0.23 -6.77 12.04 -50.00 -0.60 -7.38 16 26 C -0.11 -4.04 5.34 30.60 0.16 -3.88 16 27 C -0.12 -4.41 5.61 30.60 0.17 -4.24 16 28 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.37 19.88 6.06 -92.71 -0.56 19.32 16 30 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.88 6.51 -2.39 -0.02 1.87 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.76 7.58 -2.39 -0.02 2.75 16 36 H 0.41 12.34 8.29 -92.71 -0.77 11.57 16 37 H 0.23 2.81 6.79 -2.91 -0.02 2.79 16 38 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.10 0.38 6.39 -2.39 -0.02 0.36 16 40 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 42 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.04 1.84 7.60 -2.39 -0.02 1.83 16 47 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.12 387.10 1.94 -72.18 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.34 Total: 35.37 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 5.02 Total: 0.09 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -4.69 Total: -137.77 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.20 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -74.12 1.94 -72.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026495902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.124 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds