Wall clock time and date at job start Tue Mar 31 2020 17:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00148 * 2 1 4 4 H 1.48495 * 109.47542 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47238 * 299.99720 * 3 2 1 6 6 H 1.48509 * 109.47240 * 59.99474 * 3 2 1 7 7 C 1.38816 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00441 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99534 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47115 * 204.99997 * 10 9 7 12 12 C 1.53000 * 109.47636 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47022 * 59.99752 * 12 11 10 14 14 N 1.46496 * 109.47203 * 60.00292 * 13 12 11 15 15 C 1.34775 * 120.00329 * 154.99856 * 14 13 12 16 16 O 1.21281 * 119.99676 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00309 * 180.02562 * 15 14 13 18 18 H 1.09001 * 109.72302 * 300.56424 * 17 15 14 19 19 C 1.53436 * 109.69583 * 180.02562 * 17 15 14 20 20 C 1.53105 * 109.55659 * 190.56121 * 19 17 15 21 21 C 1.53423 * 109.57717 * 70.05448 * 20 19 17 22 22 C 1.50605 * 108.33456 * 310.17396 * 21 20 19 23 23 N 1.32913 * 129.16105 * 196.57065 * 22 21 20 24 24 N 1.29021 * 108.63272 * 179.85175 * 23 22 21 25 25 N 1.29113 * 110.25824 * 0.02982 * 24 23 22 26 26 H 0.97001 * 126.00560 * 180.02562 * 25 24 23 27 27 C 1.34394 * 107.98273 * 0.06588 * 25 24 23 28 28 C 1.53002 * 109.47051 * 300.00180 * 13 12 11 29 29 C 1.52993 * 109.47611 * 85.00177 * 10 9 7 30 30 H 0.97001 * 120.00508 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99603 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47532 * 324.99250 * 10 9 7 33 33 H 1.09000 * 109.46898 * 59.99996 * 11 10 9 34 34 H 1.09003 * 109.46823 * 300.00567 * 11 10 9 35 35 H 1.08998 * 109.46676 * 299.99913 * 12 11 10 36 36 H 1.08999 * 109.46943 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.46950 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99778 * 334.99834 * 14 13 12 39 39 H 1.09004 * 109.45293 * 310.58900 * 19 17 15 40 40 H 1.09004 * 109.45549 * 70.53379 * 19 17 15 41 41 H 1.08998 * 109.45083 * 190.08307 * 20 19 17 42 42 H 1.08999 * 109.45444 * 310.02242 * 20 19 17 43 43 H 1.08999 * 109.69564 * 69.88188 * 21 20 19 44 44 H 1.08996 * 109.69115 * 190.42608 * 21 20 19 45 45 H 1.09000 * 109.46831 * 179.97438 * 28 13 12 46 46 H 1.08995 * 109.47413 * 299.99754 * 28 13 12 47 47 H 1.09001 * 109.47301 * 300.00035 * 29 10 9 48 48 H 1.09006 * 109.47163 * 59.99416 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.1810 -4.7522 -0.6091 12 6 1.9457 -6.0773 -0.6086 13 6 2.3091 -6.4558 0.8286 14 7 1.0849 -6.5983 1.6205 15 6 1.0786 -7.3829 2.7163 16 8 2.0866 -7.9707 3.0471 17 6 -0.1809 -7.5299 3.5306 18 1 -0.4973 -6.5537 3.8982 19 6 0.0764 -8.4696 4.7160 20 6 -1.2536 -8.8262 5.3853 21 6 -2.0667 -9.7397 4.4589 22 6 -2.1062 -9.1123 3.0903 23 7 -2.9165 -9.3744 2.0699 24 7 -2.6041 -8.6003 1.0861 25 7 -1.6172 -7.8354 1.4150 26 1 -1.2005 -7.1671 0.8488 27 6 -1.2685 -8.1286 2.6793 28 6 3.1863 -5.3604 1.4382 29 6 2.4220 -4.0356 1.4374 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.9688 -3.5505 -0.5890 33 1 0.9217 -4.4823 -1.6329 34 1 0.2702 -4.8584 -0.0197 35 1 2.8566 -5.9713 -1.1978 36 1 1.3209 -6.8575 -1.0433 37 1 2.8543 -7.3997 0.8289 38 1 0.2788 -6.1278 1.3562 39 1 0.5591 -9.3796 4.3596 40 1 0.7249 -7.9737 5.4383 41 1 -1.0599 -9.3425 6.3255 42 1 -1.8172 -7.9141 5.5818 43 1 -1.5924 -10.7193 4.4002 44 1 -3.0807 -9.8451 4.8445 45 1 3.4448 -5.6299 2.4622 46 1 4.0972 -5.2545 0.8491 47 1 3.0469 -3.2553 1.8718 48 1 1.5113 -4.1419 2.0270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026550792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:46 Heat of formation + Delta-G solvation = 24.781771 kcal Electronic energy + Delta-G solvation = -29707.971824 eV Core-core repulsion = 25798.030032 eV Total energy + Delta-G solvation = -3909.941792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.64819 -41.45160 -39.55604 -37.69720 -36.33429 -35.23090 -34.24353 -32.57507 -31.74856 -31.42969 -31.17532 -29.21597 -26.01848 -25.49145 -24.35538 -23.71211 -23.53178 -22.50019 -22.26984 -20.56356 -20.30855 -19.43485 -19.10287 -18.30954 -17.43267 -16.99950 -16.79653 -16.64456 -16.07990 -15.67954 -15.39489 -15.23230 -15.09256 -14.89753 -14.75681 -14.63476 -14.30156 -13.92103 -13.64519 -13.18157 -13.15921 -13.12286 -12.87959 -12.86798 -12.67631 -12.45836 -12.25848 -12.13644 -12.07495 -12.03822 -12.01527 -11.75153 -11.65383 -11.39352 -11.35273 -11.16068 -11.01812 -10.85223 -10.16343 -9.98489 -8.98894 -7.95334 -5.22084 0.35922 1.30047 1.41806 1.45449 1.46605 1.55449 1.61801 2.04610 2.54991 3.15473 3.28419 3.38561 3.51960 3.67542 3.73270 3.82712 3.84946 3.90001 4.16182 4.25976 4.27048 4.29759 4.33140 4.34979 4.44256 4.55305 4.57888 4.61255 4.63482 4.76921 4.97594 4.98742 4.99397 5.04798 5.11063 5.12213 5.18271 5.20914 5.25608 5.31753 5.41113 5.45445 5.51227 5.54620 5.63499 5.70039 6.28166 6.30121 7.01251 7.28398 7.34613 8.12345 8.33837 9.28004 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.002897 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.675952 B = 9662.434467 C = 9988.772680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.071 0.929 9 N -0.737 5.737 10 C 0.172 3.828 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.152 3.848 14 N -0.717 5.717 15 C 0.518 3.482 16 O -0.554 6.554 17 C -0.029 4.029 18 H 0.140 0.860 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.037 4.037 22 C -0.011 4.011 23 N -0.287 5.287 24 N -0.106 5.106 25 N -0.370 5.370 26 H 0.452 0.548 27 C -0.008 4.008 28 C -0.118 4.118 29 C -0.120 4.120 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.398 0.602 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.033 0.967 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -20.324 8.638 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.064 3.936 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.048 3.952 14 N -0.370 5.370 15 C 0.304 3.696 16 O -0.431 6.431 17 C -0.053 4.053 18 H 0.157 0.843 19 C -0.134 4.134 20 C -0.150 4.150 21 C -0.076 4.076 22 C -0.152 4.152 23 N -0.152 5.152 24 N -0.084 5.084 25 N -0.092 5.092 26 H 0.301 0.699 27 C -0.144 4.144 28 C -0.158 4.158 29 C -0.161 4.161 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.234 0.766 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.052 0.948 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.310 -21.113 7.743 22.491 hybrid contribution 0.571 2.527 -0.060 2.591 sum 0.261 -18.587 7.683 20.114 Atomic orbital electron populations 1.69788 1.06376 1.25759 1.59949 1.25441 0.96298 1.00714 1.04224 0.85205 0.78310 0.80528 0.76549 1.19271 1.22247 1.22310 1.19598 0.91249 0.85408 1.40255 0.91066 1.42620 1.05404 1.00966 1.88600 1.20464 0.94355 0.84949 0.93845 1.21725 0.98337 0.94426 1.01098 1.21787 1.02379 0.96470 0.94629 1.20988 0.85031 0.98755 0.90471 1.46294 1.14869 1.48215 1.27663 1.20697 0.90027 0.78090 0.80793 1.90707 1.35680 1.47437 1.69288 1.20201 0.87477 1.03349 0.94243 0.84254 1.21496 0.98895 0.98697 0.94281 1.21676 0.94076 1.00428 0.98772 1.20216 1.02910 0.98948 0.85540 1.22325 0.95141 0.98566 0.99167 1.74832 1.23233 1.18742 0.98442 1.78573 1.04359 1.04131 1.21380 1.44864 1.24039 1.28696 1.11583 0.69920 1.21660 1.02740 1.02764 0.87279 1.21818 0.98727 0.94155 1.01058 1.21996 0.99291 0.95774 0.98990 0.94185 0.79566 0.94234 0.91781 0.92143 0.89002 0.89404 0.89205 0.76563 0.91244 0.88955 0.87569 0.90432 0.88916 0.88480 0.92660 0.90331 0.94812 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.96 45.20 29.55 68.60 2.03 47.23 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.23 -12.38 9.93 84.03 0.83 -11.54 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 9 N -0.74 -34.24 5.12 -322.95 -1.65 -35.89 16 10 C 0.17 5.90 2.77 44.99 0.12 6.02 16 11 C -0.12 -2.96 5.22 30.60 0.16 -2.80 16 12 C -0.11 -2.09 5.61 30.59 0.17 -1.92 16 13 C 0.15 3.05 2.78 44.99 0.13 3.17 16 14 N -0.72 -13.33 3.79 -442.54 -1.68 -15.01 16 15 C 0.52 10.61 7.10 87.66 0.62 11.23 16 16 O -0.55 -14.86 15.49 -3.03 -0.05 -14.91 16 17 C -0.03 -0.46 2.90 -12.19 -0.04 -0.49 16 18 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 19 C -0.10 -1.26 4.67 30.78 0.14 -1.11 16 20 C -0.11 -1.01 5.90 30.77 0.18 -0.83 16 21 C -0.04 -0.47 6.30 29.96 0.19 -0.28 16 22 C -0.01 -0.23 7.11 41.75 0.30 0.07 16 23 N -0.29 -7.47 12.40 -48.99 -0.61 -8.08 16 24 N -0.11 -2.69 13.40 37.02 0.50 -2.19 16 25 N -0.37 -7.19 6.77 -48.28 -0.33 -7.51 16 26 H 0.45 6.71 6.90 -219.68 -1.52 5.20 16 27 C -0.01 -0.15 6.38 41.50 0.26 0.12 16 28 C -0.12 -2.89 5.60 30.58 0.17 -2.72 16 29 C -0.12 -3.76 5.34 30.57 0.16 -3.60 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.37 18.55 7.80 -92.71 -0.72 17.83 16 32 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.39 6.50 -2.39 -0.02 1.37 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.86 7.58 -2.39 -0.02 1.85 16 38 H 0.40 6.43 5.04 -92.70 -0.47 5.96 16 39 H 0.07 1.12 7.73 -2.38 -0.02 1.10 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 1.56 7.60 -2.38 -0.02 1.54 16 Total: -1.00 -71.48 375.07 0.67 -70.81 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -1.70 Total: 30.96 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 3.88 Total: -8.37 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -3.49 Total: -125.71 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.05 Total: -14.91 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.48 0.67 -70.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026550792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.590 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds