Wall clock time and date at job start Tue Mar 31 2020 18:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47283 * 269.99923 * 3 2 1 5 5 H 1.48508 * 109.47212 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.47399 * 149.99856 * 3 2 1 7 7 C 1.38814 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00132 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99735 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00248 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47400 * 205.00008 * 10 9 7 12 12 C 1.52999 * 109.46798 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47193 * 60.00325 * 12 11 10 14 14 N 1.46504 * 109.47114 * 59.99237 * 13 12 11 15 15 C 1.34777 * 119.99854 * 154.99905 * 14 13 12 16 16 O 1.21603 * 119.99960 * 0.02562 * 15 14 13 17 17 C 1.47523 * 120.00283 * 180.27861 * 15 14 13 18 18 C 1.36594 * 125.77562 * 179.73080 * 17 15 14 19 19 N 1.34813 * 106.84324 * 179.97438 * 18 17 15 20 20 C 1.46497 * 126.59743 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47411 * 124.99722 * 20 19 18 22 22 C 1.52995 * 117.50319 * 243.62523 * 21 20 19 23 23 C 1.52998 * 117.50125 * 174.99634 * 21 20 19 24 24 N 1.40216 * 106.80599 * 359.97438 * 19 18 17 25 25 N 1.28758 * 108.37007 * 359.74519 * 24 19 18 26 26 C 1.52997 * 109.46984 * 299.99561 * 13 12 11 27 27 C 1.52998 * 109.47014 * 84.99442 * 10 9 7 28 28 H 0.96999 * 119.99856 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00004 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.46604 * 325.00103 * 10 9 7 31 31 H 1.08996 * 109.47024 * 59.99815 * 11 10 9 32 32 H 1.08993 * 109.46771 * 299.99493 * 11 10 9 33 33 H 1.08998 * 109.47755 * 299.99811 * 12 11 10 34 34 H 1.09000 * 109.46973 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47274 * 179.97438 * 13 12 11 36 36 H 0.96990 * 120.00418 * 335.00626 * 14 13 12 37 37 H 1.08008 * 126.57883 * 359.95020 * 18 17 15 38 38 H 1.09001 * 109.46934 * 244.99952 * 20 19 18 39 39 H 1.08996 * 109.46741 * 4.99310 * 20 19 18 40 40 H 1.09010 * 115.54828 * 29.33118 * 21 20 19 41 41 H 1.09003 * 117.49684 * 359.97438 * 22 21 20 42 42 H 1.08994 * 117.50091 * 145.01681 * 22 21 20 43 43 H 1.09001 * 117.50283 * 214.98129 * 23 21 20 44 44 H 1.08995 * 117.49828 * 359.97438 * 23 21 20 45 45 H 1.09000 * 109.47470 * 179.97438 * 26 13 12 46 46 H 1.08998 * 109.47338 * 299.99858 * 26 13 12 47 47 H 1.09000 * 109.47770 * 300.00259 * 27 10 9 48 48 H 1.09007 * 109.46895 * 60.00839 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.4991 -2.2590 0.6113 12 6 6.2638 -3.5842 0.6118 13 6 6.4105 -4.0889 -0.8251 14 7 7.1467 -3.1005 -1.6172 15 6 7.8298 -3.4881 -2.7124 16 8 7.8347 -4.6582 -3.0434 17 6 8.5761 -2.4938 -3.5066 18 6 9.3092 -2.7557 -4.6290 19 7 9.8240 -1.5804 -5.0424 20 6 10.6815 -1.3651 -6.2105 21 6 10.0571 -0.2981 -7.1119 22 6 9.6246 -0.7244 -8.5162 23 6 10.8621 0.1561 -8.3311 24 7 9.3808 -0.6036 -4.1394 25 7 8.6441 -1.1759 -3.2519 26 6 5.0236 -4.3008 -1.4353 27 6 4.2588 -2.9751 -1.4360 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3621 0.0014 30 1 3.5645 -3.2066 0.5902 31 1 5.3946 -1.8998 1.6350 32 1 6.0467 -1.5234 0.0221 33 1 5.7162 -4.3196 1.2011 34 1 7.2521 -3.4332 1.0461 35 1 6.9557 -5.0328 -0.8248 36 1 7.1426 -2.1671 -1.3533 37 1 9.4498 -3.7197 -5.0955 38 1 11.6661 -1.0324 -5.8820 39 1 10.7797 -2.2978 -6.7659 40 1 9.4491 0.4501 -6.6031 41 1 9.7853 -1.7650 -8.7981 42 1 8.7318 -0.2569 -8.9314 43 1 10.7835 1.2029 -8.6247 44 1 11.8368 -0.3049 -8.4908 45 1 5.1280 -4.6599 -2.4591 46 1 4.4759 -5.0362 -0.8460 47 1 3.2707 -3.1261 -1.8707 48 1 4.8064 -2.2394 -2.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026584766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:49 Heat of formation + Delta-G solvation = 90.316771 kcal Electronic energy + Delta-G solvation = -28418.971482 eV Core-core repulsion = 24511.871501 eV Total energy + Delta-G solvation = -3907.099981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43856 -39.93151 -38.29868 -37.85328 -34.78431 -34.44286 -32.69246 -31.35884 -30.75233 -30.44018 -28.55764 -27.76465 -24.13727 -23.26322 -23.00984 -22.82767 -22.25402 -21.58670 -20.81542 -20.49610 -18.94054 -18.51314 -17.47547 -16.86348 -16.46442 -15.86864 -15.49683 -15.34143 -15.01301 -14.84464 -14.64910 -14.35927 -14.17496 -13.86441 -13.59432 -13.40740 -12.85833 -12.63120 -12.56050 -12.27688 -12.24208 -12.12934 -11.88530 -11.76850 -11.51050 -11.21165 -11.15661 -10.90287 -10.87200 -10.82882 -10.51793 -10.41116 -10.18989 -10.09428 -9.99766 -9.70208 -9.52078 -9.51825 -8.92218 -8.79170 -7.19610 -5.71477 -3.06138 0.88701 1.57156 1.67841 3.08351 3.16865 3.26547 3.42747 3.46490 3.50252 3.70746 4.00893 4.12065 4.29392 4.33689 4.51918 4.58859 4.64809 4.74312 4.74617 4.92560 5.04129 5.04651 5.09428 5.13072 5.29706 5.48878 5.50561 5.51540 5.53994 5.58079 5.65125 5.70395 5.86251 5.88523 5.99990 6.04120 6.05663 6.23221 6.33761 6.43932 6.49819 6.59831 6.74727 6.96586 7.11734 7.47650 7.78380 8.05909 8.19301 8.48081 9.27262 10.00166 10.20296 11.47072 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.002841 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.740849 B = 9853.486148 C =11553.881747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.183 3.817 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.147 3.853 14 N -0.701 5.701 15 C 0.605 3.395 16 O -0.545 6.545 17 C -0.100 4.100 18 C 0.092 3.908 19 N -0.359 5.359 20 C 0.155 3.845 21 C -0.178 4.178 22 C -0.175 4.175 23 C -0.165 4.165 24 N -0.061 5.061 25 N -0.202 5.202 26 C -0.128 4.128 27 C -0.134 4.134 28 H 0.258 0.742 29 H 0.360 0.640 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.409 0.591 37 H 0.204 0.796 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.662 -6.323 -13.567 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.391 5.391 10 C 0.073 3.927 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.044 3.956 14 N -0.352 5.352 15 C 0.389 3.611 16 O -0.422 6.422 17 C -0.239 4.239 18 C -0.064 4.064 19 N -0.144 5.144 20 C 0.034 3.966 21 C -0.197 4.197 22 C -0.212 4.212 23 C -0.202 4.202 24 N -0.041 5.041 25 N -0.076 5.076 26 C -0.167 4.167 27 C -0.174 4.174 28 H 0.068 0.932 29 H 0.193 0.807 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.220 0.780 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 26.446 -5.728 -13.423 30.206 hybrid contribution 0.533 0.800 -0.447 1.061 sum 26.980 -4.928 -13.870 30.734 Atomic orbital electron populations 1.69708 1.05102 1.25709 1.57916 1.24671 0.95224 0.97183 1.02261 0.86552 0.79219 0.85029 0.77759 1.21194 1.21879 1.20255 1.19082 0.80674 0.94619 1.42495 0.89252 1.42800 1.03964 1.02100 1.90281 1.20199 0.90132 0.89066 0.93254 1.21867 0.97045 0.96301 1.01644 1.21786 1.00673 0.98615 0.94918 1.21057 0.92630 0.91710 0.90252 1.45948 1.49712 1.12914 1.26628 1.16731 0.78128 0.86080 0.80204 1.90789 1.64156 1.17280 1.69993 1.21541 1.09459 0.91989 1.00909 1.23357 0.94909 0.92404 0.95775 1.50469 1.35653 1.06476 1.21801 1.21590 0.92372 1.00414 0.82224 1.22549 1.05301 1.01648 0.90172 1.23152 0.99327 1.00795 0.97959 1.22993 0.96191 1.01084 0.99946 1.82004 1.13080 1.11139 0.97926 1.74684 1.09880 1.05801 1.17194 1.21935 0.94727 0.99074 1.00986 1.22197 0.99875 0.95144 1.00176 0.93171 0.80741 0.92671 0.91347 0.92550 0.90051 0.91646 0.89593 0.75444 0.77950 0.87879 0.87604 0.86066 0.88292 0.88185 0.87988 0.88220 0.92086 0.91082 0.91668 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.88 22.63 27.74 -169.99 -4.71 17.91 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.80 4.92 -53.43 -0.26 -18.06 16 10 C 0.18 3.45 2.77 -67.94 -0.19 3.26 16 11 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 12 C -0.12 -1.46 5.61 -26.73 -0.15 -1.61 16 13 C 0.15 1.91 2.78 -67.93 -0.19 1.72 16 14 N -0.70 -9.40 4.23 -54.85 -0.23 -9.63 16 15 C 0.60 8.47 7.78 -12.48 -0.10 8.37 16 16 O -0.55 -8.58 16.53 5.27 0.09 -8.49 16 17 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16 18 C 0.09 0.86 11.27 -16.84 -0.19 0.67 16 19 N -0.36 -3.18 3.69 -61.07 -0.23 -3.40 16 20 C 0.15 0.74 6.82 -4.05 -0.03 0.71 16 21 C -0.18 -1.00 5.93 -90.63 -0.54 -1.54 16 22 C -0.18 -0.82 10.18 -26.73 -0.27 -1.09 16 23 C -0.16 -0.64 10.25 -26.73 -0.27 -0.92 16 24 N -0.06 -0.76 13.48 60.35 0.81 0.05 16 25 N -0.20 -2.80 12.04 32.85 0.40 -2.40 16 26 C -0.13 -1.87 5.60 -26.71 -0.15 -2.02 16 27 C -0.13 -2.38 5.35 -26.71 -0.14 -2.52 16 28 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 29 H 0.36 8.49 5.66 -40.82 -0.23 8.26 16 30 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.83 6.51 -51.93 -0.34 0.50 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 36 H 0.41 5.48 6.55 -40.82 -0.27 5.22 16 37 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.22 7.82 -51.93 -0.41 -0.19 16 40 H 0.12 0.97 7.94 -51.92 -0.41 0.56 16 41 H 0.10 0.35 8.03 -51.93 -0.42 -0.07 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.05 0.98 7.61 -51.93 -0.39 0.59 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -35.27 391.41 -8.18 -43.45 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.52 Total: 9.61 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.19 Total: -5.87 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 1.26 Total: -62.51 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.27 -8.18 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026584766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.766 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds