Wall clock time and date at job start Tue Mar 31 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47283 * 269.99923 * 3 2 1 5 5 H 1.48508 * 109.47212 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.47399 * 149.99856 * 3 2 1 7 7 C 1.38814 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00132 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99735 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00248 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47400 * 205.00008 * 10 9 7 12 12 C 1.52999 * 109.46798 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47193 * 60.00325 * 12 11 10 14 14 N 1.46504 * 109.47114 * 59.99237 * 13 12 11 15 15 C 1.34777 * 119.99854 * 154.99905 * 14 13 12 16 16 O 1.21603 * 119.99960 * 0.02562 * 15 14 13 17 17 C 1.47523 * 120.00283 * 180.27861 * 15 14 13 18 18 C 1.36594 * 125.77562 * 179.73080 * 17 15 14 19 19 N 1.34813 * 106.84324 * 179.97438 * 18 17 15 20 20 C 1.46497 * 126.59743 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47411 * 124.99722 * 20 19 18 22 22 C 1.52995 * 117.50319 * 243.62523 * 21 20 19 23 23 C 1.52998 * 117.50125 * 174.99634 * 21 20 19 24 24 N 1.40216 * 106.80599 * 359.97438 * 19 18 17 25 25 N 1.28758 * 108.37007 * 359.74519 * 24 19 18 26 26 C 1.52997 * 109.46984 * 299.99561 * 13 12 11 27 27 C 1.52998 * 109.47014 * 84.99442 * 10 9 7 28 28 H 0.96999 * 119.99856 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00004 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.46604 * 325.00103 * 10 9 7 31 31 H 1.08996 * 109.47024 * 59.99815 * 11 10 9 32 32 H 1.08993 * 109.46771 * 299.99493 * 11 10 9 33 33 H 1.08998 * 109.47755 * 299.99811 * 12 11 10 34 34 H 1.09000 * 109.46973 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47274 * 179.97438 * 13 12 11 36 36 H 0.96990 * 120.00418 * 335.00626 * 14 13 12 37 37 H 1.08008 * 126.57883 * 359.95020 * 18 17 15 38 38 H 1.09001 * 109.46934 * 244.99952 * 20 19 18 39 39 H 1.08996 * 109.46741 * 4.99310 * 20 19 18 40 40 H 1.09010 * 115.54828 * 29.33118 * 21 20 19 41 41 H 1.09003 * 117.49684 * 359.97438 * 22 21 20 42 42 H 1.08994 * 117.50091 * 145.01681 * 22 21 20 43 43 H 1.09001 * 117.50283 * 214.98129 * 23 21 20 44 44 H 1.08995 * 117.49828 * 359.97438 * 23 21 20 45 45 H 1.09000 * 109.47470 * 179.97438 * 26 13 12 46 46 H 1.08998 * 109.47338 * 299.99858 * 26 13 12 47 47 H 1.09000 * 109.47770 * 300.00259 * 27 10 9 48 48 H 1.09007 * 109.46895 * 60.00839 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.4991 -2.2590 0.6113 12 6 6.2638 -3.5842 0.6118 13 6 6.4105 -4.0889 -0.8251 14 7 7.1467 -3.1005 -1.6172 15 6 7.8298 -3.4881 -2.7124 16 8 7.8347 -4.6582 -3.0434 17 6 8.5761 -2.4938 -3.5066 18 6 9.3092 -2.7557 -4.6290 19 7 9.8240 -1.5804 -5.0424 20 6 10.6815 -1.3651 -6.2105 21 6 10.0571 -0.2981 -7.1119 22 6 9.6246 -0.7244 -8.5162 23 6 10.8621 0.1561 -8.3311 24 7 9.3808 -0.6036 -4.1394 25 7 8.6441 -1.1759 -3.2519 26 6 5.0236 -4.3008 -1.4353 27 6 4.2588 -2.9751 -1.4360 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3621 0.0014 30 1 3.5645 -3.2066 0.5902 31 1 5.3946 -1.8998 1.6350 32 1 6.0467 -1.5234 0.0221 33 1 5.7162 -4.3196 1.2011 34 1 7.2521 -3.4332 1.0461 35 1 6.9557 -5.0328 -0.8248 36 1 7.1426 -2.1671 -1.3533 37 1 9.4498 -3.7197 -5.0955 38 1 11.6661 -1.0324 -5.8820 39 1 10.7797 -2.2978 -6.7659 40 1 9.4491 0.4501 -6.6031 41 1 9.7853 -1.7650 -8.7981 42 1 8.7318 -0.2569 -8.9314 43 1 10.7835 1.2029 -8.6247 44 1 11.8368 -0.3049 -8.4908 45 1 5.1280 -4.6599 -2.4591 46 1 4.4759 -5.0362 -0.8460 47 1 3.2707 -3.1261 -1.8707 48 1 4.8064 -2.2394 -2.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026584766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:48 Heat of formation + Delta-G solvation = 65.884613 kcal Electronic energy + Delta-G solvation = -28420.030940 eV Core-core repulsion = 24511.871501 eV Total energy + Delta-G solvation = -3908.159439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24634 -41.04637 -39.18245 -38.63175 -36.39182 -35.18678 -34.26117 -32.89287 -31.91192 -31.68495 -29.68630 -28.72957 -25.51069 -24.71783 -23.65427 -23.48792 -23.28414 -22.40310 -22.21712 -21.28947 -20.33946 -19.44261 -19.26814 -17.58442 -17.20374 -16.94949 -16.81143 -16.42152 -16.07818 -15.95816 -15.61637 -15.34745 -15.06890 -14.94867 -14.84088 -14.59801 -14.34618 -14.31423 -13.65461 -13.32542 -13.25970 -13.10274 -12.90542 -12.85697 -12.83848 -12.44248 -12.25486 -12.19576 -12.04166 -11.82118 -11.72252 -11.65386 -11.39328 -11.34874 -11.17453 -11.11956 -10.99124 -10.85597 -10.39068 -9.95867 -9.27535 -8.01312 -5.33257 0.14660 0.61997 1.07504 1.37342 1.40181 1.47276 2.16906 2.27349 2.48854 2.76286 3.18970 3.25140 3.30140 3.54701 3.71108 3.82143 3.88441 3.90339 3.91364 3.96737 4.03334 4.13519 4.21484 4.30574 4.39436 4.42442 4.53694 4.61553 4.65109 4.66679 4.75696 4.76630 4.82892 4.97184 5.02706 5.09707 5.11185 5.18441 5.20471 5.26873 5.30432 5.46103 5.49133 5.57428 5.62729 5.80225 6.23896 6.45350 6.90017 7.10132 7.15968 7.88083 8.06242 9.20570 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.002841 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.740849 B = 9853.486148 C =11553.881747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.953 3.047 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.249 1.249 7 C -0.222 4.222 8 H 0.056 0.944 9 N -0.753 5.753 10 C 0.176 3.824 11 C -0.122 4.122 12 C -0.111 4.111 13 C 0.151 3.849 14 N -0.701 5.701 15 C 0.605 3.395 16 O -0.566 6.566 17 C -0.128 4.128 18 C 0.111 3.889 19 N -0.345 5.345 20 C 0.148 3.852 21 C -0.192 4.192 22 C -0.179 4.179 23 C -0.151 4.151 24 N -0.090 5.090 25 N -0.229 5.229 26 C -0.119 4.119 27 C -0.123 4.123 28 H 0.256 0.744 29 H 0.363 0.637 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.409 0.591 37 H 0.240 0.760 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.030 0.970 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.470 -7.066 -14.234 34.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.781 3.219 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.173 1.173 7 C -0.354 4.354 8 H 0.074 0.926 9 N -0.396 5.396 10 C 0.068 3.932 11 C -0.160 4.160 12 C -0.149 4.149 13 C 0.048 3.952 14 N -0.352 5.352 15 C 0.390 3.610 16 O -0.445 6.445 17 C -0.268 4.268 18 C -0.047 4.047 19 N -0.130 5.130 20 C 0.029 3.971 21 C -0.212 4.212 22 C -0.216 4.216 23 C -0.188 4.188 24 N -0.070 5.070 25 N -0.102 5.102 26 C -0.158 4.158 27 C -0.163 4.163 28 H 0.065 0.935 29 H 0.196 0.804 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.245 0.755 37 H 0.256 0.744 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.141 0.859 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.049 0.951 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 30.324 -6.472 -14.094 34.060 hybrid contribution -0.644 0.939 -0.361 1.195 sum 29.679 -5.533 -14.455 33.473 Atomic orbital electron populations 1.69888 1.07082 1.26478 1.60304 1.25480 0.96094 1.01130 1.03169 0.85433 0.78835 0.79894 0.77776 1.21184 1.22274 1.17344 1.19040 0.82779 0.93256 1.40284 0.92602 1.42852 1.02386 1.04129 1.90186 1.20463 0.91954 0.86832 0.93942 1.21764 0.94534 0.98405 1.01289 1.21753 1.01676 0.96975 0.94490 1.21055 0.91316 0.92325 0.90553 1.45981 1.49563 1.12938 1.26691 1.16906 0.77890 0.86065 0.80130 1.90767 1.65072 1.18075 1.70564 1.21592 1.11111 0.91635 1.02440 1.23882 0.92876 0.93559 0.94386 1.50740 1.34833 1.05665 1.21730 1.22064 0.92041 1.02032 0.80965 1.22439 1.06245 1.01780 0.90699 1.23237 0.99385 1.01913 0.97041 1.23087 0.96858 1.01026 0.97843 1.81919 1.13872 1.12402 0.98828 1.74644 1.10806 1.06531 1.18250 1.21857 0.95705 0.97130 1.01152 1.21996 0.98431 0.96935 0.98912 0.93504 0.80372 0.93592 0.91077 0.92141 0.88637 0.89104 0.88459 0.75460 0.74430 0.86176 0.83890 0.89217 0.86495 0.89468 0.88391 0.85940 0.92802 0.89863 0.95081 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.89 13.97 21.65 0.30 -64.59 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.95 47.20 27.74 68.60 1.90 49.10 16 4 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 5 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 6 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 7 C -0.22 -12.95 10.41 84.03 0.87 -12.08 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 N -0.75 -35.73 4.92 -322.95 -1.59 -37.32 16 10 C 0.18 6.57 2.77 44.99 0.12 6.69 16 11 C -0.12 -3.40 5.22 30.59 0.16 -3.24 16 12 C -0.11 -2.33 5.61 30.59 0.17 -2.16 16 13 C 0.15 3.59 2.78 44.99 0.13 3.72 16 14 N -0.70 -17.75 4.23 -445.70 -1.88 -19.64 16 15 C 0.61 16.13 7.78 86.69 0.67 16.80 16 16 O -0.57 -16.85 16.53 -4.04 -0.07 -16.91 16 17 C -0.13 -3.08 6.99 40.82 0.29 -2.79 16 18 C 0.11 1.81 11.27 83.85 0.95 2.75 16 19 N -0.35 -5.42 3.69 -347.12 -1.28 -6.70 16 20 C 0.15 0.97 6.82 86.38 0.59 1.56 16 21 C -0.19 -1.88 5.93 -10.80 -0.06 -1.94 16 22 C -0.18 -1.35 10.18 30.59 0.31 -1.04 16 23 C -0.15 -0.85 10.25 30.60 0.31 -0.53 16 24 N -0.09 -2.20 13.48 37.02 0.50 -1.70 16 25 N -0.23 -6.25 12.04 -49.99 -0.60 -6.86 16 26 C -0.12 -3.36 5.60 30.61 0.17 -3.19 16 27 C -0.12 -4.40 5.35 30.61 0.16 -4.23 16 28 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 29 H 0.36 16.69 5.66 -92.71 -0.52 16.16 16 30 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.66 6.51 -2.39 -0.02 1.65 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 2.20 7.58 -2.39 -0.02 2.18 16 36 H 0.41 10.44 6.55 -92.72 -0.61 9.83 16 37 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.12 0.43 8.14 -2.39 -0.02 0.42 16 39 H 0.14 -0.09 7.82 -2.39 -0.02 -0.11 16 40 H 0.09 1.47 7.94 -2.38 -0.02 1.45 16 41 H 0.12 0.45 8.03 -2.39 -0.02 0.43 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.05 1.70 7.61 -2.38 -0.02 1.68 16 Total: -1.00 -80.03 391.41 2.38 -77.65 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.21 Total: 30.30 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.31 Total: -3.33 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -4.56 Total: -136.81 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.07 Total: -16.91 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.90 Total: 49.10 kcal Total: -80.03 2.38 -77.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026584766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.531 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds