Wall clock time and date at job start Tue Mar 31 2020 18:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47025 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47111 * 240.00352 * 3 2 1 6 6 H 1.48503 * 109.46840 * 120.00550 * 3 2 1 7 7 C 1.38815 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00021 * 151.48155 * 7 2 1 9 9 N 1.36942 * 119.99731 * 331.48462 * 7 2 1 10 10 C 1.43438 * 120.53259 * 325.95009 * 9 7 2 11 11 C 1.54404 * 116.39197 * 271.73037 * 10 9 7 12 12 C 1.54845 * 110.07185 * 318.65940 * 11 10 9 13 13 C 1.50129 * 110.81239 * 321.06806 * 12 11 10 14 14 C 1.52529 * 105.41051 * 97.68647 * 13 12 11 15 15 H 1.09002 * 108.40210 * 31.74247 * 14 13 12 16 16 N 1.46498 * 108.52218 * 149.34810 * 14 13 12 17 17 C 1.34782 * 120.00273 * 209.71568 * 16 14 13 18 18 O 1.21594 * 119.99531 * 0.02562 * 17 16 14 19 19 C 1.47519 * 120.00219 * 180.02562 * 17 16 14 20 20 C 1.36590 * 125.77289 * 179.72155 * 19 17 16 21 21 N 1.34808 * 106.84382 * 179.89967 * 20 19 17 22 22 C 1.46499 * 126.59895 * 180.13358 * 21 20 19 23 23 C 1.53782 * 113.61443 * 12.78505 * 22 21 20 24 24 C 1.53784 * 87.08070 * 220.02082 * 23 22 21 25 25 C 1.53776 * 87.08248 * 25.43435 * 24 23 22 26 26 N 1.40216 * 106.81145 * 0.35501 * 21 20 19 27 27 N 1.28764 * 108.36078 * 359.77079 * 26 21 20 28 28 C 1.46242 * 114.28007 * 270.59306 * 14 13 12 29 29 H 0.97000 * 120.00340 * 174.22478 * 1 2 3 30 30 H 1.09000 * 108.15626 * 33.31491 * 10 9 7 31 31 H 1.08999 * 108.15464 * 149.87938 * 10 9 7 32 32 H 1.09000 * 109.44321 * 198.44210 * 11 10 9 33 33 H 1.09005 * 109.34250 * 78.81345 * 11 10 9 34 34 H 1.09000 * 109.20693 * 200.73135 * 12 11 10 35 35 H 1.08999 * 109.17141 * 81.38858 * 12 11 10 36 36 H 1.09000 * 110.25215 * 338.71495 * 13 12 11 37 37 H 1.08996 * 110.36884 * 216.71706 * 13 12 11 38 38 H 0.97000 * 119.99879 * 29.72318 * 16 14 13 39 39 H 1.08000 * 126.57676 * 0.03724 * 20 19 17 40 40 H 1.08998 * 112.85669 * 144.09815 * 22 21 20 41 41 H 1.09000 * 113.61136 * 334.57180 * 23 22 21 42 42 H 1.09002 * 113.61282 * 105.47044 * 23 22 21 43 43 H 1.08993 * 113.61839 * 270.88212 * 24 23 22 44 44 H 1.08999 * 113.61142 * 139.97974 * 24 23 22 45 45 H 1.09002 * 113.61579 * 220.02123 * 25 24 23 46 46 H 1.08997 * 113.61651 * 89.11224 * 25 24 23 47 47 H 1.09003 * 109.83779 * 298.90285 * 28 14 13 48 48 H 1.08996 * 109.84825 * 177.91689 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9919 -1.2587 -0.4471 9 7 1.4501 -2.3164 0.5651 10 6 0.6053 -2.2017 1.7187 11 6 1.3096 -2.2428 3.0921 12 6 2.4179 -3.3242 3.0887 13 6 1.9717 -4.5430 2.3341 14 6 2.5686 -4.3964 0.9381 15 1 3.5159 -3.8640 1.0231 16 7 2.8346 -5.7340 0.4030 17 6 3.8450 -5.9223 -0.4690 18 8 4.5360 -4.9821 -0.8110 19 6 4.1126 -7.2691 -1.0082 20 6 5.0972 -7.5917 -1.8982 21 7 4.9985 -8.9166 -2.1266 22 6 5.8482 -9.7158 -3.0129 23 6 7.1178 -8.9818 -3.4759 24 6 6.8849 -9.6148 -4.8579 25 6 5.3959 -9.6962 -4.4826 26 7 3.9229 -9.3818 -1.3569 27 7 3.4250 -8.3851 -0.7114 28 6 1.7155 -3.6786 -0.0083 29 1 -0.4851 -0.8358 -0.0845 30 1 0.0616 -1.2595 1.6491 31 1 -0.1238 -3.0114 1.6876 32 1 0.5797 -2.4759 3.8673 33 1 1.7550 -1.2696 3.2987 34 1 2.6493 -3.6037 4.1166 35 1 3.3128 -2.9182 2.6173 36 1 0.8836 -4.5745 2.2778 37 1 2.3504 -5.4457 2.8134 38 1 2.2836 -6.4841 0.6761 39 1 5.8182 -6.9155 -2.3334 40 1 6.0375 -10.7178 -2.6277 41 1 7.0208 -7.8961 -3.4709 42 1 8.0266 -9.3288 -2.9842 43 1 7.3589 -10.5889 -4.9775 44 1 7.0896 -8.9386 -5.6879 45 1 4.9145 -10.6200 -4.8036 46 1 4.8281 -8.8059 -4.7528 47 1 0.7754 -4.2146 -0.1391 48 1 2.2249 -3.5836 -0.9672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034210488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:36 Heat of formation + Delta-G solvation = 109.378365 kcal Electronic energy + Delta-G solvation = -28959.276181 eV Core-core repulsion = 25053.002772 eV Total energy + Delta-G solvation = -3906.273408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.44501 -39.75969 -39.22831 -37.67837 -34.67279 -33.49559 -33.09231 -31.35831 -30.73715 -29.63714 -26.61022 -26.44529 -25.93624 -24.45243 -23.94624 -22.61697 -22.45266 -20.48380 -20.21928 -20.06866 -19.05411 -18.38158 -17.11045 -16.54579 -16.46701 -16.03607 -15.85030 -14.97109 -14.79477 -14.51521 -14.18509 -14.08118 -13.69761 -13.57113 -13.38041 -13.21932 -13.10796 -12.82268 -12.52471 -12.47339 -12.26451 -12.20438 -11.65294 -11.48729 -11.38839 -11.12328 -11.04742 -10.67912 -10.61318 -10.46600 -10.30136 -10.14686 -10.03122 -9.92917 -9.84478 -9.64289 -9.40510 -9.18641 -8.79215 -8.24733 -6.75780 -5.93946 -3.26568 0.96752 1.68908 1.77237 3.30046 3.45836 3.54583 3.56695 3.58802 3.73474 3.76628 4.02921 4.06844 4.09791 4.53352 4.66751 4.66852 4.85184 4.92016 4.98537 5.08627 5.18346 5.18791 5.25682 5.28607 5.31749 5.46879 5.52300 5.58550 5.66330 5.72831 6.04827 6.05748 6.12164 6.17310 6.29277 6.32688 6.53164 6.63602 6.70757 6.78047 6.86567 6.93246 7.01215 7.16243 7.42180 7.65972 7.91657 8.17195 8.43869 8.67865 9.18783 9.91014 10.36007 11.22053 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002628 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.873648 B =10653.672636 C =11658.604545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.020 4.020 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.345 4.345 8 H 0.052 0.948 9 N -0.580 5.580 10 C 0.137 3.863 11 C -0.138 4.138 12 C -0.106 4.106 13 C -0.118 4.118 14 C 0.134 3.866 15 H 0.089 0.911 16 N -0.712 5.712 17 C 0.597 3.403 18 O -0.534 6.534 19 C -0.094 4.094 20 C 0.090 3.910 21 N -0.352 5.352 22 C 0.122 3.878 23 C -0.147 4.147 24 C -0.136 4.136 25 C -0.146 4.146 26 N -0.070 5.070 27 N -0.207 5.207 28 C 0.127 3.873 29 H 0.269 0.731 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.402 0.598 39 H 0.202 0.798 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.028 0.972 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.333 -21.418 -4.895 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.223 4.223 3 Si 0.890 3.110 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.474 4.474 8 H 0.070 0.930 9 N -0.302 5.302 10 C 0.009 3.991 11 C -0.179 4.179 12 C -0.144 4.144 13 C -0.156 4.156 14 C 0.030 3.970 15 H 0.107 0.893 16 N -0.363 5.363 17 C 0.380 3.620 18 O -0.410 6.410 19 C -0.234 4.234 20 C -0.067 4.067 21 N -0.137 5.137 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.174 4.174 25 C -0.184 4.184 26 N -0.049 5.049 27 N -0.080 5.080 28 C 0.002 3.998 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.236 0.764 39 H 0.219 0.781 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.046 0.954 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.818 -20.282 -4.710 23.942 hybrid contribution 0.675 -1.423 -0.272 1.598 sum 12.493 -21.705 -4.982 25.535 Atomic orbital electron populations 1.70767 1.06896 1.30156 1.46378 1.25843 0.96284 1.01553 0.98633 0.83601 0.74960 0.76112 0.76355 1.21207 1.21908 1.22000 1.19880 0.99434 0.89040 1.39087 0.93019 1.43802 1.58622 1.00960 1.26823 1.20422 0.92224 1.01254 0.85215 1.22720 0.97480 0.97931 0.99765 1.21308 0.99886 0.95052 0.98184 1.21296 1.01454 0.98281 0.94575 1.20991 1.01511 0.80827 0.93640 0.89346 1.46290 1.32530 1.12398 1.45069 1.16788 0.80991 0.84939 0.79235 1.90848 1.49220 1.41254 1.59691 1.21644 1.00251 0.95222 1.06269 1.23247 0.99979 0.85929 0.97498 1.50539 1.24230 1.06659 1.32254 1.23432 0.90045 0.96346 0.88173 1.23483 0.96506 1.01547 0.97068 1.22713 0.95504 1.02141 0.96997 1.23452 0.97871 1.04341 0.92749 1.81956 0.98796 1.17581 1.06567 1.74623 1.20584 0.97275 1.15540 1.20711 0.96154 0.87213 0.95697 0.92025 0.90910 0.96344 0.93497 0.92678 0.93791 0.91648 0.90933 0.92028 0.76412 0.78143 0.84896 0.88414 0.89301 0.89012 0.89668 0.89621 0.88888 0.95411 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 12.19 55.49 0.68 -26.43 16 2 C -0.02 -0.58 4.82 -17.43 -0.08 -0.66 16 3 Si 1.06 25.77 30.00 -169.99 -5.10 20.67 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.35 -9.82 9.43 -15.06 -0.14 -9.96 16 8 H 0.05 1.53 7.97 -52.49 -0.42 1.11 16 9 N -0.58 -14.62 2.37 -175.40 -0.41 -15.03 16 10 C 0.14 3.20 4.45 -4.93 -0.02 3.18 16 11 C -0.14 -2.76 6.40 -25.02 -0.16 -2.92 16 12 C -0.11 -1.90 5.65 -27.19 -0.15 -2.05 16 13 C -0.12 -1.95 5.25 -28.40 -0.15 -2.10 16 14 C 0.13 2.51 2.01 -71.38 -0.14 2.37 16 15 H 0.09 1.91 6.22 -51.93 -0.32 1.59 16 16 N -0.71 -11.53 4.87 -58.26 -0.28 -11.82 16 17 C 0.60 10.13 7.73 -12.47 -0.10 10.03 16 18 O -0.53 -10.76 16.40 5.28 0.09 -10.67 16 19 C -0.09 -1.34 6.99 -83.55 -0.58 -1.93 16 20 C 0.09 1.00 10.49 -16.84 -0.18 0.82 16 21 N -0.35 -3.49 3.83 -53.77 -0.21 -3.70 16 22 C 0.12 0.71 5.06 -67.11 -0.34 0.37 16 23 C -0.15 -0.58 7.44 -25.92 -0.19 -0.78 16 24 C -0.14 -0.41 8.08 -25.92 -0.21 -0.62 16 25 C -0.15 -0.71 7.88 -25.92 -0.20 -0.91 16 26 N -0.07 -0.90 13.79 60.35 0.83 -0.07 16 27 N -0.21 -2.97 12.04 32.84 0.40 -2.57 16 28 C 0.13 2.81 5.54 -5.21 -0.03 2.78 16 29 H 0.27 8.15 7.23 -40.82 -0.30 7.86 16 30 H 0.07 1.95 5.13 -51.93 -0.27 1.68 16 31 H 0.02 0.40 6.89 -51.93 -0.36 0.04 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.30 6.82 -51.93 -0.35 0.95 16 36 H 0.07 1.21 6.28 -51.93 -0.33 0.88 16 37 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 38 H 0.40 5.68 8.30 -40.82 -0.34 5.34 16 39 H 0.20 1.72 6.78 -52.49 -0.36 1.37 16 40 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.42 6.39 -51.93 -0.33 0.08 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 48 H 0.06 1.58 7.92 -51.93 -0.41 1.16 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -33.86 379.39 -8.20 -42.06 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.22 Total: 4.21 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.69 Total: -2.38 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 1.00 Total: -59.62 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.10 Total: 20.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.86 -8.20 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034210488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.441 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds