Wall clock time and date at job start Tue Mar 31 2020 18:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47025 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47111 * 240.00352 * 3 2 1 6 6 H 1.48503 * 109.46840 * 120.00550 * 3 2 1 7 7 C 1.38815 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00021 * 151.48155 * 7 2 1 9 9 N 1.36942 * 119.99731 * 331.48462 * 7 2 1 10 10 C 1.43438 * 120.53259 * 325.95009 * 9 7 2 11 11 C 1.54404 * 116.39197 * 271.73037 * 10 9 7 12 12 C 1.54845 * 110.07185 * 318.65940 * 11 10 9 13 13 C 1.50129 * 110.81239 * 321.06806 * 12 11 10 14 14 C 1.52529 * 105.41051 * 97.68647 * 13 12 11 15 15 H 1.09002 * 108.40210 * 31.74247 * 14 13 12 16 16 N 1.46498 * 108.52218 * 149.34810 * 14 13 12 17 17 C 1.34782 * 120.00273 * 209.71568 * 16 14 13 18 18 O 1.21594 * 119.99531 * 0.02562 * 17 16 14 19 19 C 1.47519 * 120.00219 * 180.02562 * 17 16 14 20 20 C 1.36590 * 125.77289 * 179.72155 * 19 17 16 21 21 N 1.34808 * 106.84382 * 179.89967 * 20 19 17 22 22 C 1.46499 * 126.59895 * 180.13358 * 21 20 19 23 23 C 1.53782 * 113.61443 * 12.78505 * 22 21 20 24 24 C 1.53784 * 87.08070 * 220.02082 * 23 22 21 25 25 C 1.53776 * 87.08248 * 25.43435 * 24 23 22 26 26 N 1.40216 * 106.81145 * 0.35501 * 21 20 19 27 27 N 1.28764 * 108.36078 * 359.77079 * 26 21 20 28 28 C 1.46242 * 114.28007 * 270.59306 * 14 13 12 29 29 H 0.97000 * 120.00340 * 174.22478 * 1 2 3 30 30 H 1.09000 * 108.15626 * 33.31491 * 10 9 7 31 31 H 1.08999 * 108.15464 * 149.87938 * 10 9 7 32 32 H 1.09000 * 109.44321 * 198.44210 * 11 10 9 33 33 H 1.09005 * 109.34250 * 78.81345 * 11 10 9 34 34 H 1.09000 * 109.20693 * 200.73135 * 12 11 10 35 35 H 1.08999 * 109.17141 * 81.38858 * 12 11 10 36 36 H 1.09000 * 110.25215 * 338.71495 * 13 12 11 37 37 H 1.08996 * 110.36884 * 216.71706 * 13 12 11 38 38 H 0.97000 * 119.99879 * 29.72318 * 16 14 13 39 39 H 1.08000 * 126.57676 * 0.03724 * 20 19 17 40 40 H 1.08998 * 112.85669 * 144.09815 * 22 21 20 41 41 H 1.09000 * 113.61136 * 334.57180 * 23 22 21 42 42 H 1.09002 * 113.61282 * 105.47044 * 23 22 21 43 43 H 1.08993 * 113.61839 * 270.88212 * 24 23 22 44 44 H 1.08999 * 113.61142 * 139.97974 * 24 23 22 45 45 H 1.09002 * 113.61579 * 220.02123 * 25 24 23 46 46 H 1.08997 * 113.61651 * 89.11224 * 25 24 23 47 47 H 1.09003 * 109.83779 * 298.90285 * 28 14 13 48 48 H 1.08996 * 109.84825 * 177.91689 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9919 -1.2587 -0.4471 9 7 1.4501 -2.3164 0.5651 10 6 0.6053 -2.2017 1.7187 11 6 1.3096 -2.2428 3.0921 12 6 2.4179 -3.3242 3.0887 13 6 1.9717 -4.5430 2.3341 14 6 2.5686 -4.3964 0.9381 15 1 3.5159 -3.8640 1.0231 16 7 2.8346 -5.7340 0.4030 17 6 3.8450 -5.9223 -0.4690 18 8 4.5360 -4.9821 -0.8110 19 6 4.1126 -7.2691 -1.0082 20 6 5.0972 -7.5917 -1.8982 21 7 4.9985 -8.9166 -2.1266 22 6 5.8482 -9.7158 -3.0129 23 6 7.1178 -8.9818 -3.4759 24 6 6.8849 -9.6148 -4.8579 25 6 5.3959 -9.6962 -4.4826 26 7 3.9229 -9.3818 -1.3569 27 7 3.4250 -8.3851 -0.7114 28 6 1.7155 -3.6786 -0.0083 29 1 -0.4851 -0.8358 -0.0845 30 1 0.0616 -1.2595 1.6491 31 1 -0.1238 -3.0114 1.6876 32 1 0.5797 -2.4759 3.8673 33 1 1.7550 -1.2696 3.2987 34 1 2.6493 -3.6037 4.1166 35 1 3.3128 -2.9182 2.6173 36 1 0.8836 -4.5745 2.2778 37 1 2.3504 -5.4457 2.8134 38 1 2.2836 -6.4841 0.6761 39 1 5.8182 -6.9155 -2.3334 40 1 6.0375 -10.7178 -2.6277 41 1 7.0208 -7.8961 -3.4709 42 1 8.0266 -9.3288 -2.9842 43 1 7.3589 -10.5889 -4.9775 44 1 7.0896 -8.9386 -5.6879 45 1 4.9145 -10.6200 -4.8036 46 1 4.8281 -8.8059 -4.7528 47 1 0.7754 -4.2146 -0.1391 48 1 2.2249 -3.5836 -0.9672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034210488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:35 Heat of formation + Delta-G solvation = 86.710644 kcal Electronic energy + Delta-G solvation = -28960.259127 eV Core-core repulsion = 25053.002772 eV Total energy + Delta-G solvation = -3907.256354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.38091 -41.13593 -39.81604 -39.25247 -36.41585 -34.91978 -34.18002 -32.92532 -32.28668 -31.11187 -27.97085 -27.10603 -26.84311 -26.10836 -25.37600 -24.02263 -23.35463 -21.90509 -21.64110 -20.77414 -20.54313 -19.41076 -19.09578 -17.57879 -17.51354 -17.19084 -16.55696 -16.33518 -16.22639 -15.85863 -15.67412 -15.53936 -15.48991 -15.01715 -14.50508 -14.25996 -14.16520 -14.02506 -13.79094 -13.53803 -13.30917 -13.26805 -12.95348 -12.86795 -12.61323 -12.39291 -12.09906 -11.96739 -11.88845 -11.86933 -11.86412 -11.63598 -11.52886 -11.34084 -11.27159 -11.16438 -11.09241 -10.56388 -10.42778 -10.08774 -8.88939 -8.13751 -5.49713 0.05928 0.55394 1.00722 1.56779 1.63572 1.83407 2.03213 2.19662 2.64560 3.02054 3.11076 3.18568 3.35716 3.49252 3.64567 3.67228 3.73311 3.75785 3.86722 4.04095 4.10794 4.15128 4.37180 4.41784 4.45072 4.51254 4.57218 4.60463 4.64119 4.73453 4.79969 4.87936 4.91336 4.94335 4.96491 5.03630 5.12991 5.20051 5.25297 5.30247 5.40627 5.41408 5.47967 5.50500 5.56952 5.90621 6.39703 6.41909 6.85010 7.08136 7.13906 7.78325 8.22023 8.94197 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002628 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.873648 B =10653.672636 C =11658.604545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.064 4.064 3 Si 1.106 2.894 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.353 4.353 8 H 0.030 0.970 9 N -0.595 5.595 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.108 4.108 14 C 0.148 3.852 15 H 0.058 0.942 16 N -0.703 5.703 17 C 0.598 3.402 18 O -0.573 6.573 19 C -0.119 4.119 20 C 0.105 3.895 21 N -0.335 5.335 22 C 0.105 3.895 23 C -0.144 4.144 24 C -0.123 4.123 25 C -0.148 4.148 26 N -0.085 5.085 27 N -0.221 5.221 28 C 0.135 3.865 29 H 0.255 0.745 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.414 0.586 39 H 0.225 0.775 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.766 -23.511 -4.462 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.262 4.262 3 Si 0.931 3.069 4 H -0.212 1.212 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.483 4.483 8 H 0.048 0.952 9 N -0.318 5.318 10 C 0.010 3.990 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.145 4.145 14 C 0.043 3.957 15 H 0.076 0.924 16 N -0.354 5.354 17 C 0.383 3.617 18 O -0.452 6.452 19 C -0.259 4.259 20 C -0.054 4.054 21 N -0.119 5.119 22 C 0.006 3.994 23 C -0.183 4.183 24 C -0.161 4.161 25 C -0.186 4.186 26 N -0.064 5.064 27 N -0.095 5.095 28 C 0.010 3.990 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.241 0.759 40 H 0.168 0.832 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.056 0.944 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.244 -22.459 -4.273 26.422 hybrid contribution 0.261 -0.903 -0.520 1.074 sum 13.505 -23.363 -4.793 27.408 Atomic orbital electron populations 1.70882 1.07561 1.29288 1.48462 1.27090 0.96376 1.04532 0.98245 0.82984 0.74139 0.72545 0.77257 1.21202 1.20548 1.20662 1.19917 0.98591 0.90687 1.39100 0.95243 1.43933 1.58791 1.01301 1.27801 1.20437 0.92333 0.99856 0.86366 1.22621 0.98567 0.97932 0.98108 1.21252 0.97792 0.94646 1.00170 1.21264 1.01602 0.99110 0.92550 1.20547 0.99247 0.81432 0.94435 0.92417 1.46093 1.32692 1.11731 1.44913 1.17116 0.80355 0.85650 0.78568 1.90823 1.50556 1.42846 1.60975 1.21346 1.02165 0.94107 1.08243 1.23557 0.99115 0.86644 0.96035 1.50860 1.23304 1.06481 1.31304 1.24074 0.90446 0.97058 0.87862 1.23534 0.95932 1.01284 0.97513 1.22713 0.93763 1.03099 0.96496 1.23468 0.99220 1.03993 0.91939 1.81866 0.99912 1.17465 1.07177 1.74584 1.21209 0.97353 1.16325 1.20674 0.96757 0.86383 0.95173 0.93489 0.94465 0.94936 0.90357 0.94729 0.90321 0.94370 0.90431 0.88671 0.74888 0.75874 0.83199 0.88756 0.87812 0.87191 0.89268 0.88952 0.90431 0.94435 0.94854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.86 12.19 21.65 0.26 -56.60 16 2 C -0.06 -3.77 4.82 84.86 0.41 -3.36 16 3 Si 1.11 52.96 30.00 68.60 2.06 55.02 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.35 -20.84 9.43 84.03 0.79 -20.05 16 8 H 0.03 1.84 7.97 -2.91 -0.02 1.82 16 9 N -0.60 -30.91 2.37 -708.86 -1.68 -32.59 16 10 C 0.14 6.48 4.45 87.42 0.39 6.87 16 11 C -0.13 -5.12 6.40 31.70 0.20 -4.92 16 12 C -0.10 -3.41 5.65 30.30 0.17 -3.24 16 13 C -0.11 -3.32 5.25 29.51 0.16 -3.16 16 14 C 0.15 5.58 2.01 42.75 0.09 5.66 16 15 H 0.06 2.57 6.22 -2.39 -0.01 2.56 16 16 N -0.70 -22.64 4.87 -456.50 -2.22 -24.87 16 17 C 0.60 20.56 7.73 86.69 0.67 21.23 16 18 O -0.57 -23.87 16.40 -4.01 -0.07 -23.93 16 19 C -0.12 -3.35 6.99 40.81 0.29 -3.06 16 20 C 0.10 2.22 10.49 83.85 0.88 3.10 16 21 N -0.34 -6.15 3.83 -324.04 -1.24 -7.39 16 22 C 0.11 0.99 5.06 45.52 0.23 1.22 16 23 C -0.14 -0.76 7.44 31.12 0.23 -0.53 16 24 C -0.12 -0.41 8.08 31.12 0.25 -0.15 16 25 C -0.15 -1.15 7.88 31.12 0.25 -0.90 16 26 N -0.08 -2.11 13.79 37.02 0.51 -1.60 16 27 N -0.22 -6.22 12.04 -50.00 -0.60 -6.82 16 28 C 0.13 6.11 5.54 83.58 0.46 6.58 16 29 H 0.26 16.05 7.23 -92.71 -0.67 15.38 16 30 H 0.04 2.05 5.13 -2.39 -0.01 2.04 16 31 H 0.03 1.41 6.89 -2.39 -0.02 1.39 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.51 6.82 -2.39 -0.02 1.49 16 36 H 0.08 2.37 6.28 -2.39 -0.01 2.35 16 37 H 0.09 2.36 8.03 -2.39 -0.02 2.34 16 38 H 0.41 11.27 8.30 -92.71 -0.77 10.50 16 39 H 0.22 3.56 6.78 -2.91 -0.02 3.54 16 40 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.59 6.39 -2.39 -0.02 0.58 16 42 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 48 H 0.03 1.69 7.92 -2.39 -0.02 1.67 16 Total: -1.00 -77.07 379.39 2.80 -74.27 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.32 Total: 19.24 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.46 Total: 5.27 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -4.97 Total: -129.87 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 14 Polarization: 52.96 SS G_CDS: 2.06 Total: 55.02 kcal Total: -77.07 2.80 -74.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034210488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.979 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds