Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47013 * 89.99782 * 3 2 1 5 5 H 1.48495 * 109.47429 * 210.00065 * 3 2 1 6 6 H 1.48503 * 109.47030 * 330.00311 * 3 2 1 7 7 C 1.38815 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99963 * 139.29301 * 7 2 1 9 9 N 1.36940 * 119.99854 * 319.29777 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.84170 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.09004 * 109.35716 * 81.33739 * 14 13 12 16 16 N 1.46499 * 109.35943 * 201.06155 * 14 13 12 17 17 C 1.34772 * 120.00034 * 204.99615 * 16 14 13 18 18 O 1.21282 * 119.99962 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99960 * 180.02562 * 17 16 14 20 20 N 1.46499 * 109.47198 * 180.02562 * 19 17 16 21 21 C 1.35315 * 125.86917 * 124.71769 * 20 19 17 22 22 C 1.35346 * 106.17631 * 179.90648 * 21 20 19 23 23 C 1.50702 * 126.75310 * 180.12310 * 22 21 20 24 24 C 1.52999 * 117.49665 * 343.91655 * 23 22 21 25 25 C 1.53000 * 60.00069 * 252.50701 * 24 23 22 26 26 N 1.33767 * 106.49858 * 0.34917 * 22 21 20 27 27 N 1.28640 * 108.88556 * 359.77393 * 26 22 21 28 28 C 1.43430 * 120.53636 * 172.56973 * 9 7 2 29 29 H 0.96994 * 120.00074 * 173.65620 * 1 2 3 30 30 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 31 31 H 1.09009 * 109.84534 * 349.99834 * 10 9 7 32 32 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 33 33 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 34 34 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 35 35 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 36 36 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 37 37 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 38 38 H 0.97001 * 119.99792 * 25.00188 * 16 14 13 39 39 H 1.09001 * 109.47702 * 300.00300 * 19 17 16 40 40 H 1.09005 * 109.47405 * 60.00455 * 19 17 16 41 41 H 1.08004 * 126.90818 * 0.02562 * 21 20 19 42 42 H 1.08999 * 115.55105 * 129.62182 * 23 22 21 43 43 H 1.08997 * 117.50475 * 0.02562 * 24 23 22 44 44 H 1.09007 * 117.50159 * 145.01856 * 24 23 22 45 45 H 1.08998 * 117.49853 * 252.50939 * 25 24 23 46 46 H 1.09003 * 117.49510 * 107.48699 * 25 24 23 47 47 H 1.09001 * 108.15893 * 33.29946 * 28 9 7 48 48 H 1.09000 * 108.16547 * 149.86905 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8943 -1.3151 -0.6106 9 7 1.5739 -2.2450 0.7724 10 6 0.4449 -2.0544 1.7440 11 6 -0.7128 -2.7793 1.2217 12 6 -0.4750 -4.2708 1.0090 13 6 0.0459 -4.3959 -0.3934 14 6 1.5915 -4.4890 -0.4000 15 1 1.8927 -5.5130 -0.1792 16 7 2.0953 -4.1089 -1.7221 17 6 3.2894 -4.5681 -2.1457 18 8 3.9468 -5.2963 -1.4326 19 6 3.8079 -4.1767 -3.5055 20 7 5.1144 -4.8008 -3.7282 21 6 5.4473 -5.5918 -4.7745 22 6 6.7401 -5.9444 -4.5842 23 6 7.5768 -6.8210 -5.4801 24 6 6.8442 -7.6773 -6.5149 25 6 7.4726 -8.3349 -5.2847 26 7 7.1275 -5.3660 -3.4420 27 7 6.1414 -4.6955 -2.9595 28 6 2.1841 -3.5384 0.6629 29 1 -0.4850 -0.8348 -0.0928 30 1 0.7237 -2.4552 2.7185 31 1 0.2091 -0.9940 1.8339 32 1 -1.5415 -2.6568 1.9190 33 1 -0.9967 -2.3366 0.2670 34 1 0.2637 -4.6403 1.7202 35 1 -1.4098 -4.8210 1.1170 36 1 -0.3694 -5.2936 -0.8514 37 1 -0.2627 -3.5237 -0.9697 38 1 1.5693 -3.5268 -2.2925 39 1 3.1094 -4.5135 -4.2716 40 1 3.9091 -3.0926 -3.5576 41 1 4.8101 -5.8816 -5.5969 42 1 8.5492 -6.4153 -5.7596 43 1 5.7570 -7.6064 -6.5481 44 1 7.3344 -7.8351 -7.4757 45 1 8.3763 -8.9252 -5.4360 46 1 6.7988 -8.6968 -4.5081 47 1 3.2405 -3.3975 0.4342 48 1 2.1148 -4.0301 1.6332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034238186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = 128.711775 kcal Electronic energy + Delta-G solvation = -29333.585283 eV Core-core repulsion = 25428.150234 eV Total energy + Delta-G solvation = -3905.435049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.27246 -39.75218 -38.12135 -37.46989 -34.71285 -34.32822 -33.40627 -31.31762 -30.74608 -30.37620 -28.49673 -26.06363 -24.35543 -24.18882 -23.14732 -22.77693 -21.95315 -20.92423 -20.51783 -19.87963 -19.39194 -17.62253 -17.47242 -17.12255 -16.26061 -15.70954 -15.55804 -15.31719 -14.92165 -14.71731 -14.60998 -14.50005 -13.80698 -13.69537 -13.53001 -12.85513 -12.71433 -12.48922 -12.45256 -12.24377 -11.90920 -11.82151 -11.56094 -11.27023 -11.14820 -10.94121 -10.92322 -10.61917 -10.49176 -10.45140 -10.30177 -10.26390 -10.10060 -9.88167 -9.81746 -9.57310 -9.50622 -9.06719 -8.88218 -8.22512 -7.03498 -6.23611 -3.09173 1.56136 2.14931 2.51397 2.65214 3.34703 3.49477 3.54135 3.54543 3.68984 4.07639 4.40289 4.55194 4.61408 4.61969 4.68155 4.72233 4.83788 5.01739 5.07578 5.10597 5.21075 5.23607 5.31549 5.34496 5.56633 5.59924 5.70476 5.82366 5.85199 5.89568 5.91174 5.92572 6.09364 6.17021 6.24767 6.28620 6.45882 6.50100 6.58755 6.60994 6.78563 6.84329 6.91584 7.17162 7.19131 7.68687 7.94188 8.34486 8.46452 8.58742 9.00850 9.78762 10.23783 11.06579 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002955 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.179617 B = 9471.608853 C =10637.920129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.015 4.015 3 Si 1.038 2.962 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.353 4.353 8 H 0.064 0.936 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.116 3.884 15 H 0.075 0.925 16 N -0.696 5.696 17 C 0.500 3.500 18 O -0.523 6.523 19 C 0.094 3.906 20 N -0.276 5.276 21 C -0.053 4.053 22 C 0.006 3.994 23 C -0.068 4.068 24 C -0.171 4.171 25 C -0.166 4.166 26 N -0.269 5.269 27 N -0.044 5.044 28 C 0.153 3.847 29 H 0.273 0.727 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.187 0.813 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.043 0.957 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -13.106 -12.004 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.217 4.217 3 Si 0.868 3.132 4 H -0.222 1.222 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.481 4.481 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.009 3.991 15 H 0.093 0.907 16 N -0.346 5.346 17 C 0.282 3.718 18 O -0.399 6.399 19 C -0.032 4.032 20 N -0.069 5.069 21 C -0.203 4.203 22 C -0.132 4.132 23 C -0.088 4.088 24 C -0.209 4.209 25 C -0.204 4.204 26 N -0.136 5.136 27 N -0.023 5.023 28 C 0.022 3.978 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.236 0.764 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.204 0.796 42 H 0.139 0.861 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.061 0.939 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.751 -11.293 -10.077 15.593 hybrid contribution -0.773 -1.682 -1.480 2.370 sum 2.977 -12.975 -11.556 17.628 Atomic orbital electron populations 1.70850 1.07190 1.30595 1.45684 1.25395 0.95780 1.00590 0.99973 0.83933 0.75331 0.77182 0.76756 1.22165 1.21981 1.22067 1.19908 1.09205 0.92447 1.26544 0.91856 1.44356 1.38966 1.04967 1.42485 1.20599 0.86858 1.01602 0.90471 1.21089 0.99448 0.94466 1.02392 1.20945 0.99891 0.97546 0.96511 1.21665 0.93965 1.01150 0.98087 1.22853 0.93658 0.99449 0.83161 0.90651 1.45872 1.19271 1.50082 1.19420 1.19998 0.82408 0.81769 0.87597 1.90797 1.56280 1.36717 1.56065 1.21953 0.80684 1.01363 0.99182 1.46755 1.11268 1.33029 1.15814 1.23196 0.98625 1.01791 0.96653 1.20956 0.92654 1.03336 0.96226 1.19965 0.99265 0.90727 0.98890 1.23008 1.00173 1.03523 0.94164 1.23002 1.03288 0.93998 1.00064 1.75097 1.20652 1.09496 1.08308 1.78534 0.89708 1.18245 1.15826 1.20613 0.96320 0.86221 0.94629 0.91383 0.95792 0.88719 0.94138 0.91034 0.91717 0.92552 0.93643 0.90887 0.76423 0.85107 0.85036 0.79603 0.86119 0.88660 0.88025 0.88131 0.88643 0.93895 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 11.99 55.49 0.67 -23.63 16 2 C -0.01 -0.39 4.53 -17.43 -0.08 -0.47 16 3 Si 1.04 24.18 30.06 -169.99 -5.11 19.07 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.35 -8.98 9.46 -15.06 -0.14 -9.12 16 8 H 0.06 1.68 8.05 -52.48 -0.42 1.26 16 9 N -0.59 -13.32 2.62 -175.40 -0.46 -13.78 16 10 C 0.13 2.77 5.22 -5.21 -0.03 2.74 16 11 C -0.13 -2.49 4.96 -30.19 -0.15 -2.64 16 12 C -0.11 -1.74 5.76 -28.41 -0.16 -1.90 16 13 C -0.11 -1.71 5.23 -27.19 -0.14 -1.85 16 14 C 0.12 1.97 2.91 -66.22 -0.19 1.78 16 15 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 16 N -0.70 -10.63 5.08 -52.15 -0.26 -10.90 16 17 C 0.50 7.87 7.65 -10.99 -0.08 7.78 16 18 O -0.52 -10.56 15.34 5.56 0.09 -10.48 16 19 C 0.09 1.07 6.94 -5.20 -0.04 1.04 16 20 N -0.28 -3.92 3.20 -62.44 -0.20 -4.12 16 21 C -0.05 -0.61 10.89 -17.05 -0.19 -0.80 16 22 C 0.01 0.08 6.88 -82.78 -0.57 -0.49 16 23 C -0.07 -0.67 6.33 -91.77 -0.58 -1.25 16 24 C -0.17 -1.18 10.02 -26.73 -0.27 -1.45 16 25 C -0.17 -1.40 10.23 -26.73 -0.27 -1.67 16 26 N -0.27 -4.70 12.41 33.29 0.41 -4.28 16 27 N -0.04 -0.80 12.13 60.35 0.73 -0.06 16 28 C 0.15 3.11 4.74 -4.93 -0.02 3.09 16 29 H 0.27 7.10 4.95 -40.82 -0.20 6.89 16 30 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.09 2.34 5.61 -51.92 -0.29 2.05 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.47 4.65 -51.93 -0.24 1.23 16 34 H 0.06 1.03 6.28 -51.93 -0.33 0.70 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.26 6.58 -51.93 -0.34 0.92 16 38 H 0.40 5.51 8.44 -40.82 -0.34 5.17 16 39 H 0.13 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.19 1.30 7.45 -52.48 -0.39 0.91 16 42 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 0.59 7.22 -51.93 -0.38 0.21 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.04 0.99 7.80 -51.93 -0.41 0.59 16 48 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -33.49 378.72 -8.46 -41.95 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.11 Total: 5.72 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.92 Total: -5.21 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.89 Total: -56.77 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.11 Total: 19.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.49 -8.46 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034238186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.664 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds