Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47013 * 89.99782 * 3 2 1 5 5 H 1.48495 * 109.47429 * 210.00065 * 3 2 1 6 6 H 1.48503 * 109.47030 * 330.00311 * 3 2 1 7 7 C 1.38815 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99963 * 139.29301 * 7 2 1 9 9 N 1.36940 * 119.99854 * 319.29777 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.84170 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.09004 * 109.35716 * 81.33739 * 14 13 12 16 16 N 1.46499 * 109.35943 * 201.06155 * 14 13 12 17 17 C 1.34772 * 120.00034 * 204.99615 * 16 14 13 18 18 O 1.21282 * 119.99962 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99960 * 180.02562 * 17 16 14 20 20 N 1.46499 * 109.47198 * 180.02562 * 19 17 16 21 21 C 1.35315 * 125.86917 * 124.71769 * 20 19 17 22 22 C 1.35346 * 106.17631 * 179.90648 * 21 20 19 23 23 C 1.50702 * 126.75310 * 180.12310 * 22 21 20 24 24 C 1.52999 * 117.49665 * 343.91655 * 23 22 21 25 25 C 1.53000 * 60.00069 * 252.50701 * 24 23 22 26 26 N 1.33767 * 106.49858 * 0.34917 * 22 21 20 27 27 N 1.28640 * 108.88556 * 359.77393 * 26 22 21 28 28 C 1.43430 * 120.53636 * 172.56973 * 9 7 2 29 29 H 0.96994 * 120.00074 * 173.65620 * 1 2 3 30 30 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 31 31 H 1.09009 * 109.84534 * 349.99834 * 10 9 7 32 32 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 33 33 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 34 34 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 35 35 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 36 36 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 37 37 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 38 38 H 0.97001 * 119.99792 * 25.00188 * 16 14 13 39 39 H 1.09001 * 109.47702 * 300.00300 * 19 17 16 40 40 H 1.09005 * 109.47405 * 60.00455 * 19 17 16 41 41 H 1.08004 * 126.90818 * 0.02562 * 21 20 19 42 42 H 1.08999 * 115.55105 * 129.62182 * 23 22 21 43 43 H 1.08997 * 117.50475 * 0.02562 * 24 23 22 44 44 H 1.09007 * 117.50159 * 145.01856 * 24 23 22 45 45 H 1.08998 * 117.49853 * 252.50939 * 25 24 23 46 46 H 1.09003 * 117.49510 * 107.48699 * 25 24 23 47 47 H 1.09001 * 108.15893 * 33.29946 * 28 9 7 48 48 H 1.09000 * 108.16547 * 149.86905 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8943 -1.3151 -0.6106 9 7 1.5739 -2.2450 0.7724 10 6 0.4449 -2.0544 1.7440 11 6 -0.7128 -2.7793 1.2217 12 6 -0.4750 -4.2708 1.0090 13 6 0.0459 -4.3959 -0.3934 14 6 1.5915 -4.4890 -0.4000 15 1 1.8927 -5.5130 -0.1792 16 7 2.0953 -4.1089 -1.7221 17 6 3.2894 -4.5681 -2.1457 18 8 3.9468 -5.2963 -1.4326 19 6 3.8079 -4.1767 -3.5055 20 7 5.1144 -4.8008 -3.7282 21 6 5.4473 -5.5918 -4.7745 22 6 6.7401 -5.9444 -4.5842 23 6 7.5768 -6.8210 -5.4801 24 6 6.8442 -7.6773 -6.5149 25 6 7.4726 -8.3349 -5.2847 26 7 7.1275 -5.3660 -3.4420 27 7 6.1414 -4.6955 -2.9595 28 6 2.1841 -3.5384 0.6629 29 1 -0.4850 -0.8348 -0.0928 30 1 0.7237 -2.4552 2.7185 31 1 0.2091 -0.9940 1.8339 32 1 -1.5415 -2.6568 1.9190 33 1 -0.9967 -2.3366 0.2670 34 1 0.2637 -4.6403 1.7202 35 1 -1.4098 -4.8210 1.1170 36 1 -0.3694 -5.2936 -0.8514 37 1 -0.2627 -3.5237 -0.9697 38 1 1.5693 -3.5268 -2.2925 39 1 3.1094 -4.5135 -4.2716 40 1 3.9091 -3.0926 -3.5576 41 1 4.8101 -5.8816 -5.5969 42 1 8.5492 -6.4153 -5.7596 43 1 5.7570 -7.6064 -6.5481 44 1 7.3344 -7.8351 -7.4757 45 1 8.3763 -8.9252 -5.4360 46 1 6.7988 -8.6968 -4.5081 47 1 3.2405 -3.3975 0.4342 48 1 2.1148 -4.0301 1.6332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034238186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = 106.451305 kcal Electronic energy + Delta-G solvation = -29334.550569 eV Core-core repulsion = 25428.150234 eV Total energy + Delta-G solvation = -3906.400335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.31244 -41.09624 -39.61086 -38.16813 -36.19790 -35.45142 -34.95682 -33.05631 -31.90279 -31.71436 -29.62782 -27.76803 -25.81023 -25.04869 -24.73522 -23.71183 -22.94165 -22.19087 -21.68975 -21.11203 -20.83319 -19.05137 -18.63583 -18.52530 -17.31474 -17.10432 -16.65135 -16.42497 -16.21536 -16.15872 -15.63857 -15.57720 -15.47505 -15.20840 -14.84808 -14.35619 -14.00169 -13.82557 -13.75421 -13.44868 -13.33239 -12.77934 -12.59092 -12.52767 -12.46148 -12.29907 -12.20616 -12.17832 -11.94952 -11.77437 -11.74525 -11.55975 -11.38907 -11.29307 -11.20315 -11.18700 -10.78881 -10.40801 -10.04222 -10.00619 -8.87806 -8.26838 -5.07775 0.56375 1.21697 1.44513 1.47852 1.60329 1.63382 1.81998 2.19424 2.65795 2.87331 3.13214 3.26351 3.44238 3.53187 3.68815 3.79231 3.87762 3.97480 3.98809 4.00638 4.05092 4.22081 4.26761 4.36139 4.39764 4.42147 4.45846 4.65998 4.71518 4.78139 4.84744 4.92090 4.97481 5.05878 5.10835 5.14445 5.19009 5.22405 5.28540 5.30188 5.38397 5.47865 5.49502 5.58508 5.61626 5.91993 6.46016 6.50886 7.09325 7.13231 7.50761 7.86070 8.31830 9.06097 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002955 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.179617 B = 9471.608853 C =10637.920129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.051 4.051 3 Si 1.077 2.923 4 H -0.297 1.297 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.349 4.349 8 H 0.045 0.955 9 N -0.597 5.597 10 C 0.131 3.869 11 C -0.127 4.127 12 C -0.105 4.105 13 C -0.100 4.100 14 C 0.126 3.874 15 H 0.075 0.925 16 N -0.691 5.691 17 C 0.497 3.503 18 O -0.572 6.572 19 C 0.096 3.904 20 N -0.277 5.277 21 C -0.033 4.033 22 C -0.009 4.009 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.174 4.174 26 N -0.311 5.311 27 N -0.108 5.108 28 C 0.158 3.842 29 H 0.273 0.727 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.191 0.809 40 H 0.142 0.858 41 H 0.239 0.761 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.006 0.994 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -14.730 -14.535 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.251 4.251 3 Si 0.906 3.094 4 H -0.225 1.225 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.478 4.478 8 H 0.063 0.937 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.166 4.166 12 C -0.142 4.142 13 C -0.138 4.138 14 C 0.018 3.982 15 H 0.093 0.907 16 N -0.342 5.342 17 C 0.282 3.718 18 O -0.451 6.451 19 C -0.028 4.028 20 N -0.070 5.070 21 C -0.183 4.183 22 C -0.147 4.147 23 C -0.112 4.112 24 C -0.177 4.177 25 C -0.212 4.212 26 N -0.177 5.177 27 N -0.086 5.086 28 C 0.028 3.972 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.208 0.792 40 H 0.160 0.840 41 H 0.256 0.744 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.143 0.857 45 H 0.132 0.868 46 H 0.097 0.903 47 H 0.024 0.976 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.250 -12.910 -12.603 18.182 hybrid contribution -0.266 -1.238 -0.665 1.430 sum 1.984 -14.148 -13.268 19.497 Atomic orbital electron populations 1.70875 1.07569 1.30822 1.47329 1.26109 0.96033 1.02467 1.00478 0.83347 0.74706 0.74918 0.76405 1.22499 1.21274 1.22198 1.19850 1.08163 0.93536 1.26227 0.93681 1.44358 1.39749 1.05410 1.42465 1.20540 0.87746 1.00180 0.90783 1.20921 0.98249 0.96088 1.01317 1.20944 1.01423 0.95450 0.96417 1.21575 0.92255 1.01863 0.98127 1.22523 0.94827 0.97962 0.82901 0.90698 1.45805 1.19483 1.50024 1.18858 1.20717 0.81663 0.80577 0.88880 1.90781 1.57444 1.38993 1.57926 1.22245 0.80589 1.02050 0.97948 1.46985 1.11166 1.33012 1.15883 1.24010 0.98510 0.99313 0.96465 1.21647 0.94088 1.03485 0.95494 1.20084 0.99784 0.90916 1.00449 1.23170 1.00928 0.99600 0.94001 1.23046 1.03998 0.93097 1.01019 1.75007 1.21609 1.10661 1.10382 1.78471 0.91241 1.20783 1.18124 1.20567 0.94279 0.86114 0.96206 0.91412 0.94956 0.92035 0.92689 0.93076 0.91901 0.89398 0.90539 0.92473 0.75312 0.79162 0.84041 0.74448 0.86075 0.87237 0.85703 0.86824 0.90320 0.97613 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.18 11.99 21.65 0.26 -49.92 16 2 C -0.05 -2.70 4.53 84.86 0.38 -2.32 16 3 Si 1.08 49.66 30.06 68.60 2.06 51.72 16 4 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.35 -18.08 9.46 84.03 0.80 -17.28 16 8 H 0.05 2.46 8.05 -2.91 -0.02 2.44 16 9 N -0.60 -27.52 2.62 -708.84 -1.86 -29.37 16 10 C 0.13 5.67 5.22 83.58 0.44 6.11 16 11 C -0.13 -4.53 4.96 28.36 0.14 -4.39 16 12 C -0.10 -3.00 5.76 29.51 0.17 -2.83 16 13 C -0.10 -2.87 5.23 30.30 0.16 -2.71 16 14 C 0.13 4.16 2.91 46.10 0.13 4.29 16 15 H 0.07 2.53 7.58 -2.39 -0.02 2.51 16 16 N -0.69 -20.46 5.08 -437.29 -2.22 -22.68 16 17 C 0.50 15.35 7.65 87.66 0.67 16.02 16 18 O -0.57 -23.62 15.34 -3.04 -0.05 -23.66 16 19 C 0.10 1.98 6.94 85.63 0.59 2.58 16 20 N -0.28 -7.57 3.20 -351.47 -1.12 -8.70 16 21 C -0.03 -0.67 10.89 83.49 0.91 0.24 16 22 C -0.01 -0.23 6.88 41.60 0.29 0.06 16 23 C -0.09 -1.68 6.33 -11.54 -0.07 -1.75 16 24 C -0.14 -1.42 10.02 30.59 0.31 -1.12 16 25 C -0.17 -2.66 10.23 30.59 0.31 -2.34 16 26 N -0.31 -11.27 12.41 -48.60 -0.60 -11.87 16 27 N -0.11 -4.07 12.13 37.02 0.45 -3.62 16 28 C 0.16 6.53 4.74 87.43 0.41 6.94 16 29 H 0.27 14.33 4.95 -92.71 -0.46 13.87 16 30 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.06 3.09 5.61 -2.38 -0.01 3.08 16 32 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.05 2.07 4.65 -2.39 -0.01 2.06 16 34 H 0.06 1.85 6.28 -2.39 -0.02 1.84 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.86 6.58 -2.39 -0.02 1.85 16 38 H 0.41 10.66 8.44 -92.71 -0.78 9.87 16 39 H 0.19 1.57 8.07 -2.39 -0.02 1.55 16 40 H 0.14 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.24 2.03 7.45 -2.91 -0.02 2.01 16 42 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.11 0.81 7.22 -2.39 -0.02 0.80 16 44 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.01 0.27 7.80 -2.39 -0.02 0.25 16 48 H 0.04 1.68 6.89 -2.39 -0.02 1.66 16 Total: -1.00 -78.75 378.72 3.07 -75.67 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.51 Total: 20.92 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.64 Total: 1.50 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.10 Total: -126.16 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.06 Total: 51.72 kcal Total: -78.75 3.07 -75.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034238186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.126 kcal (2) G-P(sol) polarization free energy of solvation -78.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds