Wall clock time and date at job start Tue Mar 31 2020 18:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48495 * 109.47072 * 275.53660 * 3 2 1 5 5 H 1.48500 * 109.47205 * 35.53650 * 3 2 1 6 6 H 1.48505 * 109.47262 * 155.53360 * 3 2 1 7 7 C 1.38811 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99487 * 336.27738 * 7 2 1 9 9 N 1.36932 * 120.00278 * 156.28159 * 7 2 1 10 10 C 1.44578 * 118.64100 * 319.21880 * 9 7 2 11 11 C 1.54860 * 109.58192 * 270.71494 * 10 9 7 12 12 C 1.47094 * 110.32475 * 288.74802 * 11 10 9 13 13 C 1.52566 * 114.32807 * 62.79947 * 12 11 10 14 14 C 1.50882 * 109.36039 * 274.99418 * 13 12 11 15 15 H 1.09008 * 109.36212 * 331.81590 * 14 13 12 16 16 N 1.46495 * 109.36600 * 212.07568 * 14 13 12 17 17 C 1.34774 * 120.00107 * 154.99686 * 16 14 13 18 18 O 1.21281 * 120.00236 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99905 * 180.02562 * 17 16 14 20 20 H 1.09002 * 109.68894 * 299.44931 * 19 17 16 21 21 C 1.53443 * 109.69351 * 178.87012 * 19 17 16 22 22 C 1.53104 * 109.54940 * 190.57107 * 21 19 17 23 23 C 1.53423 * 109.58137 * 70.06468 * 22 21 19 24 24 C 1.50598 * 108.33414 * 310.18592 * 23 22 21 25 25 N 1.32909 * 129.15845 * 196.60949 * 24 23 22 26 26 N 1.29028 * 108.63211 * 179.77386 * 25 24 23 27 27 N 1.29105 * 110.25695 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.00561 * 180.02562 * 27 26 25 29 29 C 1.34398 * 107.99132 * 0.07184 * 27 26 25 30 30 C 1.47576 * 118.62650 * 139.17867 * 9 7 2 31 31 H 0.96998 * 120.00702 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.44959 * 150.69252 * 10 9 7 33 33 H 1.09001 * 109.45117 * 30.74643 * 10 9 7 34 34 H 1.09007 * 109.32873 * 49.00705 * 11 10 9 35 35 H 1.09002 * 109.33027 * 168.65343 * 11 10 9 36 36 H 1.09004 * 108.51345 * 184.05629 * 12 11 10 37 37 H 1.09000 * 108.50946 * 301.54671 * 12 11 10 38 38 H 1.09001 * 109.48469 * 34.95127 * 13 12 11 39 39 H 1.08993 * 109.48993 * 155.02419 * 13 12 11 40 40 H 0.97004 * 119.99911 * 334.99554 * 16 14 13 41 41 H 1.09005 * 109.45026 * 310.59222 * 21 19 17 42 42 H 1.09000 * 109.46083 * 70.54291 * 21 19 17 43 43 H 1.09000 * 109.45680 * 310.02802 * 22 21 19 44 44 H 1.09004 * 109.45266 * 190.09312 * 22 21 19 45 45 H 1.08999 * 109.69202 * 190.47478 * 23 22 21 46 46 H 1.09005 * 109.72158 * 69.91555 * 23 22 21 47 47 H 1.08998 * 108.94894 * 17.20007 * 30 9 7 48 48 H 1.09005 * 108.89774 * 258.50803 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3806 2.1140 -1.3935 5 1 1.5109 2.6161 0.8137 6 1 3.6013 1.4093 0.5799 7 6 2.0103 -1.2021 -0.0005 8 1 1.5387 -2.0980 0.3754 9 7 3.2928 -1.2519 -0.4776 10 6 3.6181 -0.5029 -1.6707 11 6 3.3677 -1.3828 -2.9202 12 6 4.3833 -2.4430 -3.0103 13 6 4.3683 -3.4283 -1.8456 14 6 5.1869 -2.8701 -0.7077 15 1 5.9614 -2.2151 -1.1070 16 7 5.8137 -3.9723 0.0262 17 6 6.9449 -3.7581 0.7269 18 8 7.4442 -2.6531 0.7496 19 6 7.5899 -4.8921 1.4814 20 1 6.8969 -5.2762 2.2301 21 6 8.8696 -4.3953 2.1669 22 6 9.6583 -5.5909 2.7078 23 6 10.2452 -6.3914 1.5380 24 6 9.1437 -6.6572 0.5460 25 7 9.1023 -7.5417 -0.4452 26 7 7.9652 -7.4350 -1.0457 27 7 7.2515 -6.5132 -0.4909 28 1 6.3591 -6.2439 -0.7594 29 6 7.9626 -5.9917 0.5233 30 6 4.2859 -2.0673 0.2482 31 1 -0.4851 0.8400 0.0004 32 1 4.6669 -0.2075 -1.6391 33 1 2.9915 0.3875 -1.7223 34 1 2.3786 -1.8356 -2.8503 35 1 3.4176 -0.7618 -3.8146 36 1 4.2234 -2.9977 -3.9350 37 1 5.3673 -1.9766 -3.0564 38 1 3.3418 -3.5829 -1.5133 39 1 4.7938 -4.3787 -2.1677 40 1 5.4145 -4.8562 0.0079 41 1 9.4810 -3.8534 1.4453 42 1 8.6062 -3.7315 2.9904 43 1 8.9944 -6.2309 3.2888 44 1 10.4672 -5.2337 3.3452 45 1 10.6457 -7.3367 1.9041 46 1 11.0388 -5.8167 1.0604 47 1 3.7619 -2.7605 0.9063 48 1 4.9095 -1.4087 0.8528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034364003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:32 Heat of formation + Delta-G solvation = 72.785890 kcal Electronic energy + Delta-G solvation = -29993.522800 eV Core-core repulsion = 26085.662623 eV Total energy + Delta-G solvation = -3907.860177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.84861 -40.26861 -38.29139 -36.98433 -35.02986 -34.22260 -33.50329 -31.50230 -31.21586 -30.44094 -30.02561 -26.38385 -25.33391 -24.59496 -23.63479 -23.15860 -22.60115 -21.22114 -20.30350 -19.85639 -19.61477 -18.51105 -17.36778 -16.72867 -16.53860 -16.31515 -15.78352 -15.19755 -15.17056 -14.66358 -14.39867 -14.25066 -14.07423 -13.88602 -13.52482 -13.26303 -13.17782 -12.93831 -12.57455 -12.34093 -11.93765 -11.80789 -11.73612 -11.70677 -11.60352 -11.40696 -11.32571 -10.97970 -10.88304 -10.68542 -10.62957 -10.43139 -10.30354 -10.17509 -10.03260 -9.75916 -9.58299 -9.22168 -9.13551 -8.52773 -6.82572 -6.07880 -3.51069 1.14757 2.14490 2.23035 2.45676 2.92152 3.28627 3.44099 3.52121 3.86482 4.02022 4.25187 4.38450 4.48068 4.51314 4.78497 4.87445 4.92170 4.93307 5.04350 5.08985 5.11515 5.21090 5.27061 5.33624 5.51391 5.57864 5.62209 5.66580 5.67762 5.69208 5.81494 5.89912 5.97292 6.07628 6.10693 6.22290 6.30971 6.40471 6.42806 6.53965 6.55281 6.60936 6.71381 6.82857 7.04850 7.26573 7.96982 8.03472 8.10837 8.30957 8.97222 9.64968 10.02813 11.07175 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.003154 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.587506 B = 8874.818704 C = 9609.932292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.043 3.957 3 Si 0.874 3.126 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.277 4.277 8 H 0.075 0.925 9 N -0.598 5.598 10 C 0.145 3.855 11 C -0.144 4.144 12 C -0.099 4.099 13 C -0.117 4.117 14 C 0.128 3.872 15 H 0.084 0.916 16 N -0.726 5.726 17 C 0.514 3.486 18 O -0.516 6.516 19 C -0.033 4.033 20 H 0.121 0.879 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.036 4.036 24 C -0.004 4.004 25 N -0.258 5.258 26 N -0.080 5.080 27 N -0.380 5.380 28 H 0.444 0.556 29 C -0.010 4.010 30 C 0.142 3.858 31 H 0.264 0.736 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.386 0.614 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.695 -12.530 2.387 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.158 4.158 3 Si 0.704 3.296 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.406 4.406 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.184 4.184 12 C -0.137 4.137 13 C -0.155 4.155 14 C 0.023 3.977 15 H 0.102 0.898 16 N -0.378 5.378 17 C 0.298 3.702 18 O -0.390 6.390 19 C -0.057 4.057 20 H 0.138 0.862 21 C -0.136 4.136 22 C -0.158 4.158 23 C -0.075 4.075 24 C -0.144 4.144 25 N -0.123 5.123 26 N -0.059 5.059 27 N -0.100 5.100 28 H 0.291 0.709 29 C -0.146 4.146 30 C 0.016 3.984 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.220 0.780 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 17.106 -12.743 1.296 21.369 hybrid contribution -0.743 1.474 0.464 1.715 sum 16.363 -11.268 1.760 19.945 Atomic orbital electron populations 1.69878 1.06082 1.26895 1.50722 1.25488 0.94987 0.97819 0.97549 0.86975 0.80874 0.84663 0.77125 1.21260 1.22795 1.19343 1.18728 0.87088 0.94338 1.40436 0.90763 1.43734 1.07778 1.55185 1.25399 1.21120 0.97306 0.93931 0.85791 1.21378 1.00003 0.97970 0.99059 1.20232 0.99687 0.96942 0.96797 1.21305 1.01816 0.97435 0.94919 1.21596 0.95714 0.87712 0.92651 0.89784 1.46373 1.26403 1.13175 1.51854 1.20342 0.80691 0.89721 0.79398 1.90754 1.62850 1.24596 1.60771 1.20110 1.00531 0.90071 0.94944 0.86151 1.21484 0.93392 0.97790 1.00978 1.21684 1.00351 0.96566 0.97154 1.20042 0.93816 1.01310 0.92350 1.21732 0.96436 0.96835 0.99435 1.74862 1.11076 1.19838 1.06571 1.78612 0.99615 1.07971 1.19718 1.44856 1.17261 1.25824 1.22062 0.70860 1.21490 0.94972 1.02233 0.95895 1.21539 0.90720 0.93597 0.92533 0.92626 0.94765 0.92825 0.90908 0.93164 0.93172 0.93287 0.89501 0.93126 0.77994 0.89913 0.89473 0.91120 0.89867 0.89463 0.89568 0.92287 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.97 55.49 0.78 -25.68 16 2 C 0.04 1.20 5.22 -17.43 -0.09 1.11 16 3 Si 0.87 21.93 25.28 -169.99 -4.30 17.63 16 4 H -0.28 -6.94 6.70 56.52 0.38 -6.56 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.28 -7.36 9.65 -15.06 -0.15 -7.50 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 N -0.60 -13.39 1.79 -172.11 -0.31 -13.69 16 10 C 0.14 3.05 4.52 -4.09 -0.02 3.03 16 11 C -0.14 -2.57 5.74 -28.58 -0.16 -2.73 16 12 C -0.10 -1.45 5.15 -29.79 -0.15 -1.61 16 13 C -0.12 -1.61 5.07 -28.02 -0.14 -1.76 16 14 C 0.13 1.90 2.27 -68.50 -0.16 1.75 16 15 H 0.08 1.40 6.75 -51.92 -0.35 1.05 16 16 N -0.73 -8.22 4.54 -54.36 -0.25 -8.47 16 17 C 0.51 6.26 7.10 -10.98 -0.08 6.18 16 18 O -0.52 -8.37 15.50 5.56 0.09 -8.29 16 19 C -0.03 -0.28 2.91 -92.78 -0.27 -0.55 16 20 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.10 -0.78 4.66 -26.45 -0.12 -0.90 16 22 C -0.12 -0.69 5.90 -26.46 -0.16 -0.84 16 23 C -0.04 -0.26 6.30 -27.71 -0.17 -0.43 16 24 C 0.00 -0.05 7.11 -83.12 -0.59 -0.64 16 25 N -0.26 -3.29 12.40 33.16 0.41 -2.88 16 26 N -0.08 -0.98 13.40 60.35 0.81 -0.18 16 27 N -0.38 -3.62 6.76 33.39 0.23 -3.39 16 28 H 0.44 3.14 6.82 -190.07 -1.30 1.84 16 29 C -0.01 -0.10 6.38 -82.50 -0.53 -0.62 16 30 C 0.14 2.71 5.83 -2.96 -0.02 2.69 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.03 0.68 8.07 -51.92 -0.42 0.26 16 33 H 0.05 1.26 3.59 -51.93 -0.19 1.07 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.71 7.36 -51.93 -0.38 0.32 16 38 H 0.09 1.39 7.48 -51.93 -0.39 1.00 16 39 H 0.05 0.55 7.94 -51.93 -0.41 0.14 16 40 H 0.39 3.17 6.58 -40.82 -0.27 2.90 16 41 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -33.35 366.33 -8.15 -41.50 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.32 Total: 0.76 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.81 Total: -2.83 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 1.67 Total: -54.29 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.30 Total: 17.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.35 -8.15 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034364003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.286 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds