Wall clock time and date at job start Tue Mar 31 2020 18:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48495 * 109.47072 * 275.53660 * 3 2 1 5 5 H 1.48500 * 109.47205 * 35.53650 * 3 2 1 6 6 H 1.48505 * 109.47262 * 155.53360 * 3 2 1 7 7 C 1.38811 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99487 * 336.27738 * 7 2 1 9 9 N 1.36932 * 120.00278 * 156.28159 * 7 2 1 10 10 C 1.44578 * 118.64100 * 319.21880 * 9 7 2 11 11 C 1.54860 * 109.58192 * 270.71494 * 10 9 7 12 12 C 1.47094 * 110.32475 * 288.74802 * 11 10 9 13 13 C 1.52566 * 114.32807 * 62.79947 * 12 11 10 14 14 C 1.50882 * 109.36039 * 274.99418 * 13 12 11 15 15 H 1.09008 * 109.36212 * 331.81590 * 14 13 12 16 16 N 1.46495 * 109.36600 * 212.07568 * 14 13 12 17 17 C 1.34774 * 120.00107 * 154.99686 * 16 14 13 18 18 O 1.21281 * 120.00236 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99905 * 180.02562 * 17 16 14 20 20 H 1.09002 * 109.68894 * 299.44931 * 19 17 16 21 21 C 1.53443 * 109.69351 * 178.87012 * 19 17 16 22 22 C 1.53104 * 109.54940 * 190.57107 * 21 19 17 23 23 C 1.53423 * 109.58137 * 70.06468 * 22 21 19 24 24 C 1.50598 * 108.33414 * 310.18592 * 23 22 21 25 25 N 1.32909 * 129.15845 * 196.60949 * 24 23 22 26 26 N 1.29028 * 108.63211 * 179.77386 * 25 24 23 27 27 N 1.29105 * 110.25695 * 0.02562 * 26 25 24 28 28 H 0.97001 * 126.00561 * 180.02562 * 27 26 25 29 29 C 1.34398 * 107.99132 * 0.07184 * 27 26 25 30 30 C 1.47576 * 118.62650 * 139.17867 * 9 7 2 31 31 H 0.96998 * 120.00702 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.44959 * 150.69252 * 10 9 7 33 33 H 1.09001 * 109.45117 * 30.74643 * 10 9 7 34 34 H 1.09007 * 109.32873 * 49.00705 * 11 10 9 35 35 H 1.09002 * 109.33027 * 168.65343 * 11 10 9 36 36 H 1.09004 * 108.51345 * 184.05629 * 12 11 10 37 37 H 1.09000 * 108.50946 * 301.54671 * 12 11 10 38 38 H 1.09001 * 109.48469 * 34.95127 * 13 12 11 39 39 H 1.08993 * 109.48993 * 155.02419 * 13 12 11 40 40 H 0.97004 * 119.99911 * 334.99554 * 16 14 13 41 41 H 1.09005 * 109.45026 * 310.59222 * 21 19 17 42 42 H 1.09000 * 109.46083 * 70.54291 * 21 19 17 43 43 H 1.09000 * 109.45680 * 310.02802 * 22 21 19 44 44 H 1.09004 * 109.45266 * 190.09312 * 22 21 19 45 45 H 1.08999 * 109.69202 * 190.47478 * 23 22 21 46 46 H 1.09005 * 109.72158 * 69.91555 * 23 22 21 47 47 H 1.08998 * 108.94894 * 17.20007 * 30 9 7 48 48 H 1.09005 * 108.89774 * 258.50803 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3806 2.1140 -1.3935 5 1 1.5109 2.6161 0.8137 6 1 3.6013 1.4093 0.5799 7 6 2.0103 -1.2021 -0.0005 8 1 1.5387 -2.0980 0.3754 9 7 3.2928 -1.2519 -0.4776 10 6 3.6181 -0.5029 -1.6707 11 6 3.3677 -1.3828 -2.9202 12 6 4.3833 -2.4430 -3.0103 13 6 4.3683 -3.4283 -1.8456 14 6 5.1869 -2.8701 -0.7077 15 1 5.9614 -2.2151 -1.1070 16 7 5.8137 -3.9723 0.0262 17 6 6.9449 -3.7581 0.7269 18 8 7.4442 -2.6531 0.7496 19 6 7.5899 -4.8921 1.4814 20 1 6.8969 -5.2762 2.2301 21 6 8.8696 -4.3953 2.1669 22 6 9.6583 -5.5909 2.7078 23 6 10.2452 -6.3914 1.5380 24 6 9.1437 -6.6572 0.5460 25 7 9.1023 -7.5417 -0.4452 26 7 7.9652 -7.4350 -1.0457 27 7 7.2515 -6.5132 -0.4909 28 1 6.3591 -6.2439 -0.7594 29 6 7.9626 -5.9917 0.5233 30 6 4.2859 -2.0673 0.2482 31 1 -0.4851 0.8400 0.0004 32 1 4.6669 -0.2075 -1.6391 33 1 2.9915 0.3875 -1.7223 34 1 2.3786 -1.8356 -2.8503 35 1 3.4176 -0.7618 -3.8146 36 1 4.2234 -2.9977 -3.9350 37 1 5.3673 -1.9766 -3.0564 38 1 3.3418 -3.5829 -1.5133 39 1 4.7938 -4.3787 -2.1677 40 1 5.4145 -4.8562 0.0079 41 1 9.4810 -3.8534 1.4453 42 1 8.6062 -3.7315 2.9904 43 1 8.9944 -6.2309 3.2888 44 1 10.4672 -5.2337 3.3452 45 1 10.6457 -7.3367 1.9041 46 1 11.0388 -5.8167 1.0604 47 1 3.7619 -2.7605 0.9063 48 1 4.9095 -1.4087 0.8528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034364003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:31 Heat of formation + Delta-G solvation = 49.424437 kcal Electronic energy + Delta-G solvation = -29994.535828 eV Core-core repulsion = 26085.662623 eV Total energy + Delta-G solvation = -3908.873205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.63653 -41.33270 -39.61979 -37.75718 -36.35881 -35.27512 -34.84592 -33.39615 -32.26029 -31.16488 -31.03715 -28.08244 -26.48691 -25.75682 -24.80660 -24.14438 -23.56727 -22.34261 -21.45573 -21.18423 -20.52270 -19.33365 -18.64109 -18.23990 -17.78864 -17.38274 -16.90262 -16.65467 -16.34517 -15.85376 -15.45765 -15.11690 -14.99509 -14.89739 -14.77450 -14.72635 -14.49177 -14.36648 -13.90561 -13.54049 -13.28348 -13.19528 -12.88446 -12.69877 -12.64578 -12.44969 -12.25440 -12.20609 -12.05083 -11.99344 -11.79848 -11.72108 -11.63199 -11.47896 -11.38173 -11.27479 -11.04540 -10.66778 -10.27428 -9.97365 -8.71460 -8.24357 -5.62706 0.36646 1.26515 1.29801 1.37629 1.42539 1.48545 1.61254 1.96669 2.38522 3.02287 3.15949 3.24476 3.35787 3.56116 3.73521 3.75860 3.89494 3.92120 4.12345 4.17178 4.23973 4.26587 4.28422 4.32786 4.45190 4.46468 4.58284 4.64158 4.77315 4.82245 4.89439 4.97640 4.99171 5.02078 5.12118 5.16765 5.19251 5.20336 5.29648 5.31949 5.33434 5.43394 5.46725 5.57719 5.73106 5.94809 6.15428 6.31023 6.98942 7.05030 7.29648 7.62588 8.00699 8.94839 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.003154 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.587506 B = 8874.818704 C = 9609.932292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.007 4.007 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.306 1.306 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.046 0.954 9 N -0.605 5.605 10 C 0.136 3.864 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.111 4.111 14 C 0.145 3.855 15 H 0.072 0.928 16 N -0.715 5.715 17 C 0.513 3.487 18 O -0.557 6.557 19 C -0.022 4.022 20 H 0.151 0.849 21 C -0.099 4.099 22 C -0.109 4.109 23 C -0.038 4.038 24 C -0.011 4.011 25 N -0.288 5.288 26 N -0.104 5.104 27 N -0.368 5.368 28 H 0.454 0.546 29 C -0.007 4.007 30 C 0.144 3.856 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.405 0.595 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.747 -13.717 2.379 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.204 4.204 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.234 1.234 6 H -0.197 1.197 7 C -0.389 4.389 8 H 0.064 0.936 9 N -0.329 5.329 10 C 0.010 3.990 11 C -0.173 4.173 12 C -0.138 4.138 13 C -0.149 4.149 14 C 0.039 3.961 15 H 0.090 0.910 16 N -0.368 5.368 17 C 0.300 3.700 18 O -0.434 6.434 19 C -0.045 4.045 20 H 0.169 0.831 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.151 4.151 25 N -0.153 5.153 26 N -0.083 5.083 27 N -0.090 5.090 28 H 0.303 0.697 29 C -0.144 4.144 30 C 0.018 3.982 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.242 0.758 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 19.178 -13.977 1.262 23.764 hybrid contribution -1.362 1.803 0.494 2.313 sum 17.816 -12.174 1.755 21.650 Atomic orbital electron populations 1.69975 1.07422 1.27411 1.53510 1.25989 0.95444 1.00528 0.98487 0.86057 0.79178 0.81376 0.77414 1.20071 1.23409 1.19661 1.18659 0.88576 0.93104 1.38597 0.93615 1.43796 1.06995 1.55837 1.26261 1.21216 0.97413 0.93642 0.86681 1.21251 0.99622 0.98506 0.97948 1.20228 0.98873 0.96462 0.98268 1.21256 1.00489 0.99052 0.94122 1.21138 0.94583 0.88224 0.92118 0.90953 1.46190 1.26166 1.13181 1.51287 1.20965 0.80295 0.90043 0.78737 1.90745 1.63965 1.26602 1.62082 1.20168 1.01330 0.88251 0.94749 0.83128 1.21518 0.92937 0.98704 1.00575 1.21661 1.00872 0.95472 0.96702 1.20214 0.93115 1.02205 0.92179 1.22290 0.97394 0.96169 0.99268 1.74839 1.11600 1.21176 1.07714 1.78561 1.00070 1.09139 1.20521 1.44846 1.17474 1.25067 1.21643 0.69716 1.21610 0.94809 1.02109 0.95840 1.21574 0.90183 0.93181 0.93218 0.92751 0.93402 0.95318 0.93544 0.91399 0.90598 0.92362 0.91705 0.89168 0.75847 0.91797 0.89083 0.89848 0.87830 0.88282 0.89316 0.92539 0.97748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.97 21.65 0.30 -56.78 16 2 C -0.01 -0.39 5.22 84.86 0.44 0.05 16 3 Si 0.93 46.20 25.28 68.60 1.73 47.93 16 4 H -0.27 -12.96 6.70 99.48 0.67 -12.29 16 5 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 6 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.26 -14.07 9.65 84.03 0.81 -13.26 16 8 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 9 N -0.60 -27.16 1.79 -698.43 -1.25 -28.41 16 10 C 0.14 5.63 4.52 87.37 0.39 6.03 16 11 C -0.13 -4.56 5.74 29.39 0.17 -4.39 16 12 C -0.10 -2.67 5.15 28.61 0.15 -2.52 16 13 C -0.11 -2.79 5.07 29.76 0.15 -2.64 16 14 C 0.15 4.06 2.27 44.62 0.10 4.17 16 15 H 0.07 2.28 6.75 -2.38 -0.02 2.27 16 16 N -0.72 -14.56 4.54 -444.29 -2.02 -16.58 16 17 C 0.51 11.48 7.10 87.66 0.62 12.10 16 18 O -0.56 -17.50 15.50 -3.03 -0.05 -17.55 16 19 C -0.02 -0.32 2.91 -12.19 -0.04 -0.35 16 20 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 21 C -0.10 -1.33 4.66 30.78 0.14 -1.19 16 22 C -0.11 -0.90 5.90 30.77 0.18 -0.72 16 23 C -0.04 -0.45 6.30 29.96 0.19 -0.26 16 24 C -0.01 -0.20 7.11 41.75 0.30 0.10 16 25 N -0.29 -6.98 12.40 -48.99 -0.61 -7.59 16 26 N -0.10 -2.40 13.40 37.02 0.50 -1.91 16 27 N -0.37 -6.17 6.76 -48.27 -0.33 -6.50 16 28 H 0.45 5.12 6.82 -219.68 -1.50 3.63 16 29 C -0.01 -0.12 6.38 41.50 0.26 0.15 16 30 C 0.14 5.44 5.83 86.49 0.50 5.95 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 32 H 0.05 1.84 8.07 -2.38 -0.02 1.82 16 33 H 0.03 1.33 3.59 -2.39 -0.01 1.32 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.49 7.36 -2.39 -0.02 1.47 16 38 H 0.06 1.97 7.48 -2.39 -0.02 1.95 16 39 H 0.09 1.58 7.94 -2.39 -0.02 1.56 16 40 H 0.40 5.41 6.58 -92.71 -0.61 4.80 16 41 H 0.06 1.12 7.75 -2.38 -0.02 1.11 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 0.52 8.12 -2.39 -0.02 0.51 16 44 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.06 2.12 7.87 -2.39 -0.02 2.10 16 48 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 Total: -1.00 -75.09 366.33 1.51 -73.57 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -1.15 Total: 10.61 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.38 Total: 3.20 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.40 Total: -117.77 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.73 Total: 47.93 kcal Total: -75.09 1.51 -73.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034364003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.997 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds