Wall clock time and date at job start Tue Mar 31 2020 18:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48497 * 109.47278 * 274.73276 * 3 2 1 5 5 H 1.48492 * 109.47324 * 34.73889 * 3 2 1 6 6 H 1.48507 * 109.46832 * 154.73992 * 3 2 1 7 7 C 1.38808 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00127 * 196.58960 * 7 2 1 9 9 N 1.36938 * 119.99958 * 16.58486 * 7 2 1 10 10 C 1.47599 * 118.64773 * 27.05446 * 9 7 2 11 11 C 1.53939 * 112.14366 * 137.86783 * 10 9 7 12 12 C 1.50884 * 110.09480 * 319.43492 * 11 10 9 13 13 C 1.52570 * 109.35146 * 91.89137 * 12 11 10 14 14 C 1.47090 * 114.32678 * 274.97974 * 13 12 11 15 15 H 1.08999 * 109.33444 * 302.71709 * 14 13 12 16 16 N 1.46499 * 109.32947 * 183.06206 * 14 13 12 17 17 C 1.34777 * 119.99880 * 154.65510 * 16 14 13 18 18 O 1.21277 * 120.00403 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99855 * 180.02562 * 17 16 14 20 20 H 1.09000 * 109.72357 * 59.43360 * 19 17 16 21 21 C 1.53441 * 109.69372 * 180.02562 * 19 17 16 22 22 C 1.53105 * 109.53746 * 169.41882 * 21 19 17 23 23 C 1.53425 * 109.57437 * 289.93576 * 22 21 19 24 24 C 1.50596 * 108.33647 * 49.82136 * 23 22 21 25 25 N 1.32910 * 129.16401 * 163.47905 * 24 23 22 26 26 N 1.29019 * 108.63363 * 180.13904 * 25 24 23 27 27 N 1.29107 * 110.25927 * 359.97438 * 26 25 24 28 28 H 0.97003 * 126.00365 * 179.90918 * 27 26 25 29 29 C 1.34392 * 107.98638 * 359.93647 * 27 26 25 30 30 C 1.44662 * 118.81202 * 207.06455 * 9 7 2 31 31 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 32 32 H 1.09004 * 108.94753 * 17.18316 * 10 9 7 33 33 H 1.09007 * 108.94876 * 258.55799 * 10 9 7 34 34 H 1.09001 * 109.36895 * 199.24465 * 11 10 9 35 35 H 1.09003 * 109.26766 * 79.56146 * 11 10 9 36 36 H 1.08997 * 109.49303 * 331.92738 * 12 11 10 37 37 H 1.09002 * 109.49300 * 211.85156 * 12 11 10 38 38 H 1.09000 * 108.50932 * 153.73152 * 13 12 11 39 39 H 1.08995 * 108.39206 * 36.14980 * 13 12 11 40 40 H 0.96995 * 120.00366 * 334.65439 * 16 14 13 41 41 H 1.08999 * 109.45815 * 49.40073 * 21 19 17 42 42 H 1.08999 * 109.45386 * 289.43904 * 21 19 17 43 43 H 1.08995 * 109.45838 * 49.96614 * 22 21 19 44 44 H 1.09001 * 109.45167 * 169.90912 * 22 21 19 45 45 H 1.09002 * 109.68908 * 169.52993 * 23 22 21 46 46 H 1.08999 * 109.69454 * 290.11005 * 23 22 21 47 47 H 1.08999 * 109.61700 * 150.83091 * 30 9 7 48 48 H 1.09003 * 109.32840 * 30.88600 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3976 2.1043 -1.3953 5 1 1.5012 2.6217 0.7978 6 1 3.5942 1.4134 0.5975 7 6 2.0103 -1.2021 0.0005 8 1 3.0565 -1.2215 0.2676 9 7 1.3683 -2.3635 -0.3374 10 6 0.2040 -2.2911 -1.2417 11 6 0.2166 -3.4137 -2.2949 12 6 1.6190 -3.6263 -2.8093 13 6 2.3064 -4.7019 -1.9737 14 6 2.9324 -4.2027 -0.7398 15 1 3.6563 -3.4274 -0.9906 16 7 3.6187 -5.3063 -0.0635 17 6 4.6544 -5.0518 0.7606 18 8 5.0180 -3.9092 0.9426 19 6 5.3607 -6.1871 1.4558 20 1 5.7701 -6.8742 0.7153 21 6 6.4937 -5.6333 2.3300 22 6 7.0353 -6.7459 3.2316 23 6 5.9894 -7.0990 4.2971 24 6 4.6687 -7.3223 3.6089 25 7 3.5744 -7.9220 4.0666 26 7 2.6730 -7.8951 3.1440 27 7 3.1275 -7.3001 2.0921 28 1 2.6422 -7.1545 1.2649 29 6 4.3911 -6.9186 2.3446 30 6 1.8561 -3.6129 0.2046 31 1 -0.4850 0.8400 -0.0004 32 1 0.2110 -1.3276 -1.7513 33 1 -0.7086 -2.3704 -0.6507 34 1 -0.4348 -3.1385 -3.1244 35 1 -0.1459 -4.3364 -1.8416 36 1 2.1791 -2.6942 -2.7342 37 1 1.5800 -3.9447 -3.8510 38 1 3.0748 -5.1760 -2.5843 39 1 1.5654 -5.4550 -1.7056 40 1 3.3278 -6.2201 -0.2087 41 1 6.1118 -4.8197 2.9467 42 1 7.2950 -5.2602 1.6923 43 1 7.2520 -7.6281 2.6293 44 1 7.9492 -6.4058 3.7187 45 1 6.2895 -8.0073 4.8195 46 1 5.8985 -6.2784 5.0088 47 1 1.0303 -4.3181 0.2990 48 1 2.2938 -3.4337 1.1867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034364005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:35 Heat of formation + Delta-G solvation = 70.432238 kcal Electronic energy + Delta-G solvation = -30258.323808 eV Core-core repulsion = 26350.361570 eV Total energy + Delta-G solvation = -3907.962239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.69952 -40.08955 -38.09751 -36.80709 -34.82398 -34.09444 -33.28664 -31.24082 -30.83203 -30.30592 -29.84886 -26.15988 -25.11658 -24.22699 -23.49706 -23.09454 -22.60692 -20.89619 -20.26404 -19.73786 -19.28961 -18.35832 -17.21389 -16.66378 -16.35221 -16.17275 -15.63050 -15.04305 -14.71958 -14.53548 -14.17640 -14.04983 -13.87828 -13.78139 -13.44207 -13.17807 -12.79843 -12.62472 -12.44606 -12.22417 -11.81305 -11.66297 -11.59501 -11.49296 -11.28680 -11.12488 -11.01172 -10.86320 -10.80851 -10.64557 -10.54546 -10.26744 -10.17604 -9.85633 -9.79210 -9.71212 -9.66511 -9.06703 -9.01722 -8.38124 -6.69597 -5.78992 -3.23405 1.29536 2.29198 2.39472 2.67593 3.08528 3.39006 3.46515 3.50145 4.00764 4.16168 4.39478 4.49210 4.55097 4.63705 4.92912 4.98280 5.03737 5.10695 5.17009 5.23814 5.34061 5.35461 5.45720 5.61625 5.62219 5.69012 5.77837 5.80152 5.86919 5.91624 5.99845 6.02376 6.10477 6.16141 6.27234 6.47753 6.50974 6.51734 6.56478 6.60641 6.73168 6.82315 6.97216 7.37604 7.46378 7.65754 7.88231 8.20613 8.26132 8.46895 9.23336 9.87741 10.32050 11.28713 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.003670 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.968851 B = 7626.766839 C = 8374.788476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.582 5.582 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.112 3.888 15 H 0.092 0.908 16 N -0.729 5.729 17 C 0.510 3.490 18 O -0.506 6.506 19 C -0.032 4.032 20 H 0.116 0.884 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.036 4.036 24 C -0.005 4.005 25 N -0.258 5.258 26 N -0.080 5.080 27 N -0.378 5.378 28 H 0.444 0.556 29 C -0.009 4.009 30 C 0.158 3.842 31 H 0.253 0.747 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.380 0.620 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.029 0.971 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 -16.965 -0.893 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.302 5.302 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.139 4.139 13 C -0.151 4.151 14 C 0.006 3.994 15 H 0.110 0.890 16 N -0.381 5.381 17 C 0.293 3.707 18 O -0.379 6.379 19 C -0.055 4.055 20 H 0.133 0.867 21 C -0.138 4.138 22 C -0.156 4.156 23 C -0.075 4.075 24 C -0.145 4.145 25 N -0.124 5.124 26 N -0.059 5.059 27 N -0.098 5.098 28 H 0.291 0.709 29 C -0.145 4.145 30 C 0.028 3.972 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.213 0.787 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.048 0.952 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.963 -16.705 0.024 19.451 hybrid contribution 0.529 0.960 -1.281 1.686 sum 10.492 -15.745 -1.257 18.962 Atomic orbital electron populations 1.70087 1.05233 1.25447 1.54002 1.25026 0.95223 0.98404 1.00495 0.86301 0.79441 0.83744 0.77561 1.21470 1.21801 1.20207 1.19297 0.92959 0.84792 1.41865 0.91281 1.43576 1.33908 1.01394 1.51339 1.21046 0.88836 0.95805 0.89223 1.22080 0.95823 1.00615 0.99744 1.20827 0.97121 0.99354 0.96553 1.20595 0.99305 0.99055 0.96123 1.21395 0.96601 0.87792 0.93608 0.88956 1.46370 1.33778 1.09987 1.47933 1.20284 0.80499 0.90235 0.79667 1.90804 1.64104 1.21794 1.61182 1.20089 0.93832 0.95136 0.96490 0.86661 1.21489 0.95835 0.98478 0.97953 1.21673 0.98179 0.98768 0.97010 1.20035 0.87310 1.02910 0.97266 1.21712 0.97741 1.02594 0.92483 1.74847 0.98671 1.17494 1.21376 1.78601 1.20941 1.15668 0.90671 1.44818 1.10558 1.38870 1.15568 0.70896 1.21459 0.87753 1.06355 0.98949 1.20909 0.93123 0.88673 0.94516 0.93716 0.90774 0.95680 0.92784 0.93719 0.90359 0.93277 0.93293 0.92947 0.78728 0.89668 0.89688 0.91315 0.89965 0.89566 0.89493 0.95239 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 11.11 55.49 0.62 -25.48 16 2 C 0.01 0.20 4.84 -17.43 -0.08 0.12 16 3 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -7.12 9.44 -15.06 -0.14 -7.26 16 8 H 0.07 1.96 7.88 -52.49 -0.41 1.55 16 9 N -0.58 -14.04 2.27 -172.03 -0.39 -14.43 16 10 C 0.18 4.03 4.67 -2.95 -0.01 4.02 16 11 C -0.14 -2.51 5.70 -27.30 -0.16 -2.66 16 12 C -0.10 -1.60 5.51 -28.01 -0.15 -1.75 16 13 C -0.11 -1.57 4.55 -29.79 -0.14 -1.70 16 14 C 0.11 1.83 2.34 -69.78 -0.16 1.66 16 15 H 0.09 1.84 7.57 -51.93 -0.39 1.45 16 16 N -0.73 -9.02 4.61 -55.62 -0.26 -9.28 16 17 C 0.51 6.98 7.08 -10.98 -0.08 6.91 16 18 O -0.51 -9.43 15.48 5.56 0.09 -9.34 16 19 C -0.03 -0.31 2.90 -92.79 -0.27 -0.58 16 20 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.10 -0.92 4.67 -26.45 -0.12 -1.04 16 22 C -0.12 -0.80 5.90 -26.46 -0.16 -0.96 16 23 C -0.04 -0.31 6.30 -27.71 -0.17 -0.48 16 24 C -0.01 -0.06 7.11 -83.12 -0.59 -0.65 16 25 N -0.26 -3.72 12.40 33.16 0.41 -3.30 16 26 N -0.08 -1.11 13.40 60.35 0.81 -0.30 16 27 N -0.38 -4.21 6.77 33.38 0.23 -3.98 16 28 H 0.44 3.82 6.89 -190.07 -1.31 2.51 16 29 C -0.01 -0.10 6.38 -82.51 -0.53 -0.63 16 30 C 0.16 3.22 5.24 -4.04 -0.02 3.20 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.07 1.91 6.40 -51.93 -0.33 1.58 16 33 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 36 H 0.08 1.48 7.48 -51.93 -0.39 1.10 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.65 7.34 -51.93 -0.38 0.27 16 40 H 0.38 3.29 6.74 -40.82 -0.27 3.02 16 41 H 0.08 0.99 7.73 -51.93 -0.40 0.59 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.56 8.05 -51.93 -0.42 0.15 16 48 H 0.05 1.09 7.97 -51.93 -0.41 0.67 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -33.67 370.55 -9.20 -42.87 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.46 Total: 2.41 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.79 Total: -1.82 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 1.42 Total: -56.78 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.67 -9.20 -42.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034364005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.302 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds