Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48497 * 109.47278 * 274.73276 * 3 2 1 5 5 H 1.48492 * 109.47324 * 34.73889 * 3 2 1 6 6 H 1.48507 * 109.46832 * 154.73992 * 3 2 1 7 7 C 1.38808 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00127 * 196.58960 * 7 2 1 9 9 N 1.36938 * 119.99958 * 16.58486 * 7 2 1 10 10 C 1.47599 * 118.64773 * 27.05446 * 9 7 2 11 11 C 1.53939 * 112.14366 * 137.86783 * 10 9 7 12 12 C 1.50884 * 110.09480 * 319.43492 * 11 10 9 13 13 C 1.52570 * 109.35146 * 91.89137 * 12 11 10 14 14 C 1.47090 * 114.32678 * 274.97974 * 13 12 11 15 15 H 1.08999 * 109.33444 * 302.71709 * 14 13 12 16 16 N 1.46499 * 109.32947 * 183.06206 * 14 13 12 17 17 C 1.34777 * 119.99880 * 154.65510 * 16 14 13 18 18 O 1.21277 * 120.00403 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99855 * 180.02562 * 17 16 14 20 20 H 1.09000 * 109.72357 * 59.43360 * 19 17 16 21 21 C 1.53441 * 109.69372 * 180.02562 * 19 17 16 22 22 C 1.53105 * 109.53746 * 169.41882 * 21 19 17 23 23 C 1.53425 * 109.57437 * 289.93576 * 22 21 19 24 24 C 1.50596 * 108.33647 * 49.82136 * 23 22 21 25 25 N 1.32910 * 129.16401 * 163.47905 * 24 23 22 26 26 N 1.29019 * 108.63363 * 180.13904 * 25 24 23 27 27 N 1.29107 * 110.25927 * 359.97438 * 26 25 24 28 28 H 0.97003 * 126.00365 * 179.90918 * 27 26 25 29 29 C 1.34392 * 107.98638 * 359.93647 * 27 26 25 30 30 C 1.44662 * 118.81202 * 207.06455 * 9 7 2 31 31 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 32 32 H 1.09004 * 108.94753 * 17.18316 * 10 9 7 33 33 H 1.09007 * 108.94876 * 258.55799 * 10 9 7 34 34 H 1.09001 * 109.36895 * 199.24465 * 11 10 9 35 35 H 1.09003 * 109.26766 * 79.56146 * 11 10 9 36 36 H 1.08997 * 109.49303 * 331.92738 * 12 11 10 37 37 H 1.09002 * 109.49300 * 211.85156 * 12 11 10 38 38 H 1.09000 * 108.50932 * 153.73152 * 13 12 11 39 39 H 1.08995 * 108.39206 * 36.14980 * 13 12 11 40 40 H 0.96995 * 120.00366 * 334.65439 * 16 14 13 41 41 H 1.08999 * 109.45815 * 49.40073 * 21 19 17 42 42 H 1.08999 * 109.45386 * 289.43904 * 21 19 17 43 43 H 1.08995 * 109.45838 * 49.96614 * 22 21 19 44 44 H 1.09001 * 109.45167 * 169.90912 * 22 21 19 45 45 H 1.09002 * 109.68908 * 169.52993 * 23 22 21 46 46 H 1.08999 * 109.69454 * 290.11005 * 23 22 21 47 47 H 1.08999 * 109.61700 * 150.83091 * 30 9 7 48 48 H 1.09003 * 109.32840 * 30.88600 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3976 2.1043 -1.3953 5 1 1.5012 2.6217 0.7978 6 1 3.5942 1.4134 0.5975 7 6 2.0103 -1.2021 0.0005 8 1 3.0565 -1.2215 0.2676 9 7 1.3683 -2.3635 -0.3374 10 6 0.2040 -2.2911 -1.2417 11 6 0.2166 -3.4137 -2.2949 12 6 1.6190 -3.6263 -2.8093 13 6 2.3064 -4.7019 -1.9737 14 6 2.9324 -4.2027 -0.7398 15 1 3.6563 -3.4274 -0.9906 16 7 3.6187 -5.3063 -0.0635 17 6 4.6544 -5.0518 0.7606 18 8 5.0180 -3.9092 0.9426 19 6 5.3607 -6.1871 1.4558 20 1 5.7701 -6.8742 0.7153 21 6 6.4937 -5.6333 2.3300 22 6 7.0353 -6.7459 3.2316 23 6 5.9894 -7.0990 4.2971 24 6 4.6687 -7.3223 3.6089 25 7 3.5744 -7.9220 4.0666 26 7 2.6730 -7.8951 3.1440 27 7 3.1275 -7.3001 2.0921 28 1 2.6422 -7.1545 1.2649 29 6 4.3911 -6.9186 2.3446 30 6 1.8561 -3.6129 0.2046 31 1 -0.4850 0.8400 -0.0004 32 1 0.2110 -1.3276 -1.7513 33 1 -0.7086 -2.3704 -0.6507 34 1 -0.4348 -3.1385 -3.1244 35 1 -0.1459 -4.3364 -1.8416 36 1 2.1791 -2.6942 -2.7342 37 1 1.5800 -3.9447 -3.8510 38 1 3.0748 -5.1760 -2.5843 39 1 1.5654 -5.4550 -1.7056 40 1 3.3278 -6.2201 -0.2087 41 1 6.1118 -4.8197 2.9467 42 1 7.2950 -5.2602 1.6923 43 1 7.2520 -7.6281 2.6293 44 1 7.9492 -6.4058 3.7187 45 1 6.2895 -8.0073 4.8195 46 1 5.8985 -6.2784 5.0088 47 1 1.0303 -4.3181 0.2990 48 1 2.2938 -3.4337 1.1867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034364005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = 46.654347 kcal Electronic energy + Delta-G solvation = -30259.354895 eV Core-core repulsion = 26350.361570 eV Total energy + Delta-G solvation = -3908.993326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.62881 -41.28923 -39.48227 -37.71649 -36.33331 -35.24065 -34.70808 -32.94033 -32.15999 -31.16427 -30.99384 -27.97144 -26.32129 -25.55815 -24.87764 -24.19264 -23.58008 -22.04620 -21.60735 -20.93969 -20.52543 -19.32028 -18.64223 -18.20835 -17.58049 -17.32456 -16.73055 -16.54458 -16.31448 -15.64407 -15.45863 -15.24648 -14.94624 -14.76466 -14.72388 -14.42252 -14.29881 -14.10591 -13.87832 -13.20613 -13.15154 -13.05873 -12.85972 -12.70208 -12.52266 -12.46154 -12.36580 -12.24587 -12.07946 -11.99927 -11.70460 -11.65001 -11.50552 -11.43809 -11.37825 -11.18847 -10.97522 -10.58481 -10.25870 -9.96301 -8.69193 -7.92225 -5.38619 0.37148 1.31304 1.39290 1.40675 1.47099 1.50763 1.68179 2.00291 2.47400 3.17870 3.20626 3.30275 3.53753 3.66013 3.75450 3.86805 3.91989 4.05966 4.15134 4.22751 4.28105 4.32514 4.37228 4.45312 4.46506 4.58670 4.63767 4.70085 4.95339 4.97009 4.98202 5.00298 5.05848 5.12292 5.17778 5.19270 5.21391 5.31614 5.32803 5.34624 5.46349 5.57943 5.59622 5.67608 5.74267 5.77955 6.35198 6.40749 7.13467 7.14718 7.30012 7.88976 8.24750 9.12150 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.003670 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.968851 B = 7626.766839 C = 8374.788476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.050 0.950 9 N -0.595 5.595 10 C 0.185 3.815 11 C -0.131 4.131 12 C -0.098 4.098 13 C -0.111 4.111 14 C 0.135 3.865 15 H 0.052 0.948 16 N -0.713 5.713 17 C 0.507 3.493 18 O -0.561 6.561 19 C -0.017 4.017 20 H 0.161 0.839 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.039 4.039 24 C -0.014 4.014 25 N -0.289 5.289 26 N -0.107 5.107 27 N -0.368 5.368 28 H 0.454 0.546 29 C -0.007 4.007 30 C 0.158 3.842 31 H 0.250 0.750 32 H 0.037 0.963 33 H -0.008 1.008 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.405 0.595 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.679 -19.772 -2.503 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.067 0.933 9 N -0.317 5.317 10 C 0.060 3.940 11 C -0.170 4.170 12 C -0.136 4.136 13 C -0.149 4.149 14 C 0.028 3.972 15 H 0.071 0.929 16 N -0.367 5.367 17 C 0.293 3.707 18 O -0.438 6.438 19 C -0.041 4.041 20 H 0.178 0.822 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.078 4.078 24 C -0.154 4.154 25 N -0.154 5.154 26 N -0.086 5.086 27 N -0.089 5.089 28 H 0.303 0.697 29 C -0.144 4.144 30 C 0.030 3.970 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.010 0.990 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.241 0.759 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 11.592 -19.594 -1.599 22.823 hybrid contribution 0.020 1.836 -0.716 1.971 sum 11.612 -17.758 -2.316 21.344 Atomic orbital electron populations 1.70219 1.06277 1.25724 1.55394 1.25654 0.95977 1.01060 1.01015 0.85409 0.78069 0.80271 0.77710 1.20607 1.21778 1.20327 1.19332 0.92293 0.86529 1.41190 0.93263 1.43706 1.34072 1.01744 1.52217 1.20848 0.86913 0.96620 0.89634 1.21943 0.97704 0.98947 0.98372 1.20808 0.95382 0.98472 0.98985 1.20553 1.00751 0.98899 0.94698 1.20744 0.94399 0.88198 0.93866 0.92921 1.46098 1.33085 1.10323 1.47167 1.21046 0.80193 0.90529 0.78966 1.90797 1.65680 1.24425 1.62858 1.20168 0.93063 0.93917 0.96918 0.82153 1.21529 0.95806 0.98548 0.98081 1.21651 0.97975 0.98518 0.96245 1.20225 0.86312 1.03503 0.97794 1.22315 0.98330 1.01911 0.92887 1.74817 0.99652 1.18806 1.22136 1.78543 1.21454 1.17087 0.91469 1.44812 1.10630 1.38033 1.15462 0.69731 1.21670 0.87752 1.05929 0.99020 1.21007 0.94504 0.87821 0.93702 0.94085 0.94402 0.99016 0.91132 0.91581 0.94156 0.89718 0.89940 0.90079 0.75865 0.92892 0.88683 0.89151 0.87882 0.87989 0.89994 0.93557 0.97335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 11.11 21.65 0.24 -55.79 16 2 C -0.04 -2.39 4.84 84.86 0.41 -1.98 16 3 Si 0.96 47.11 29.59 68.60 2.03 49.14 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 7 C -0.26 -15.15 9.44 84.03 0.79 -14.35 16 8 H 0.05 2.98 7.88 -2.91 -0.02 2.96 16 9 N -0.60 -29.86 2.27 -698.18 -1.58 -31.45 16 10 C 0.18 8.72 4.67 86.49 0.40 9.13 16 11 C -0.13 -4.34 5.70 30.22 0.17 -4.17 16 12 C -0.10 -2.88 5.51 29.76 0.16 -2.72 16 13 C -0.11 -2.70 4.55 28.61 0.13 -2.57 16 14 C 0.14 4.28 2.34 43.79 0.10 4.38 16 15 H 0.05 2.14 7.57 -2.39 -0.02 2.13 16 16 N -0.71 -16.20 4.61 -448.28 -2.07 -18.27 16 17 C 0.51 13.35 7.08 87.66 0.62 13.97 16 18 O -0.56 -21.46 15.48 -3.02 -0.05 -21.50 16 19 C -0.02 -0.29 2.90 -12.20 -0.04 -0.33 16 20 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 21 C -0.10 -1.67 4.67 30.78 0.14 -1.53 16 22 C -0.11 -1.10 5.90 30.77 0.18 -0.92 16 23 C -0.04 -0.60 6.30 29.96 0.19 -0.41 16 24 C -0.01 -0.31 7.11 41.75 0.30 -0.01 16 25 N -0.29 -8.15 12.40 -48.99 -0.61 -8.76 16 26 N -0.11 -2.90 13.40 37.02 0.50 -2.41 16 27 N -0.37 -7.56 6.77 -48.30 -0.33 -7.89 16 28 H 0.45 6.70 6.89 -219.68 -1.51 5.19 16 29 C -0.01 -0.14 6.38 41.49 0.26 0.12 16 30 C 0.16 6.57 5.24 87.36 0.46 7.02 16 31 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.04 2.03 6.40 -2.39 -0.02 2.02 16 33 H -0.01 -0.44 8.03 -2.38 -0.02 -0.46 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 1.93 7.31 -2.39 -0.02 1.91 16 36 H 0.04 1.51 7.48 -2.39 -0.02 1.49 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.58 7.34 -2.39 -0.02 1.56 16 40 H 0.40 5.47 6.74 -92.71 -0.62 4.85 16 41 H 0.05 1.23 7.73 -2.39 -0.02 1.21 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 0.62 8.12 -2.39 -0.02 0.60 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 48 H 0.01 0.40 7.97 -2.39 -0.02 0.38 16 Total: -1.00 -80.74 370.55 1.28 -79.46 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -1.15 Total: 11.82 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.29 Total: 5.64 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -3.85 Total: -124.55 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.74 1.28 -79.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034364005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.112 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds