Wall clock time and date at job start Tue Mar 31 2020 18:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48498 * 109.46948 * 89.99982 * 3 2 1 5 5 H 1.48496 * 109.46819 * 210.00021 * 3 2 1 6 6 H 1.48504 * 109.47067 * 329.99911 * 3 2 1 7 7 C 1.38811 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00091 * 158.15400 * 7 2 1 9 9 N 1.36940 * 119.99987 * 338.15208 * 7 2 1 10 10 C 1.43438 * 120.53535 * 156.89859 * 9 7 2 11 11 C 1.54396 * 116.38994 * 271.73048 * 10 9 7 12 12 C 1.54839 * 110.07341 * 318.64985 * 11 10 9 13 13 C 1.50127 * 110.81729 * 321.08006 * 12 11 10 14 14 C 1.52523 * 105.41727 * 97.67749 * 13 12 11 15 15 H 1.09003 * 108.39636 * 31.74991 * 14 13 12 16 16 N 1.46502 * 108.52090 * 149.35261 * 14 13 12 17 17 C 1.34781 * 119.99861 * 209.72279 * 16 14 13 18 18 O 1.21281 * 119.99894 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99921 * 180.02562 * 17 16 14 20 20 H 1.08998 * 109.68491 * 299.45255 * 19 17 16 21 21 C 1.53430 * 109.69303 * 178.86504 * 19 17 16 22 22 C 1.53110 * 109.55103 * 190.56949 * 21 19 17 23 23 C 1.53418 * 109.57540 * 70.06729 * 22 21 19 24 24 C 1.50596 * 108.33765 * 310.18426 * 23 22 21 25 25 N 1.32907 * 129.16227 * 196.60658 * 24 23 22 26 26 N 1.29025 * 108.63556 * 179.77621 * 25 24 23 27 27 N 1.29110 * 110.25637 * 0.02562 * 26 25 24 28 28 H 0.96994 * 126.00521 * 180.02562 * 27 26 25 29 29 C 1.34396 * 107.98595 * 0.07581 * 27 26 25 30 30 C 1.46235 * 114.27793 * 270.59257 * 14 13 12 31 31 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 32 32 H 1.09001 * 108.15639 * 33.31258 * 10 9 7 33 33 H 1.09004 * 108.15751 * 149.87175 * 10 9 7 34 34 H 1.09008 * 109.44241 * 198.43618 * 11 10 9 35 35 H 1.08996 * 109.24234 * 78.73810 * 11 10 9 36 36 H 1.09001 * 109.21075 * 200.73023 * 12 11 10 37 37 H 1.09005 * 109.17049 * 81.39831 * 12 11 10 38 38 H 1.09002 * 110.24618 * 338.70172 * 13 12 11 39 39 H 1.09002 * 110.36550 * 216.71769 * 13 12 11 40 40 H 0.96999 * 120.00048 * 29.71905 * 16 14 13 41 41 H 1.09006 * 109.45838 * 310.59649 * 21 19 17 42 42 H 1.09000 * 109.45876 * 70.54567 * 21 19 17 43 43 H 1.08999 * 109.45471 * 310.03931 * 22 21 19 44 44 H 1.08997 * 109.45526 * 190.09997 * 22 21 19 45 45 H 1.09002 * 109.69454 * 190.47601 * 23 22 21 46 46 H 1.08999 * 109.69190 * 69.89785 * 23 22 21 47 47 H 1.08994 * 109.84646 * 298.90436 * 30 14 13 48 48 H 1.09008 * 109.89862 * 177.94555 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0321 -1.2359 -0.3475 9 7 1.3993 -2.3453 0.4424 10 6 1.8668 -3.6327 0.0165 11 6 1.2574 -4.1865 -1.2896 12 6 -0.2635 -3.8988 -1.3302 13 6 -0.8770 -4.0789 0.0281 14 6 -0.9615 -2.6774 0.6239 15 1 -1.1169 -1.9671 -0.1882 16 7 -2.1207 -2.6208 1.5179 17 6 -2.7774 -1.4576 1.6971 18 8 -2.4084 -0.4575 1.1185 19 6 -3.9696 -1.3992 2.6172 20 1 -4.7450 -2.0752 2.2567 21 6 -4.5143 0.0342 2.6673 22 6 -5.5477 0.1506 3.7911 23 6 -4.8418 0.0584 5.1501 24 6 -3.9413 -1.1486 5.1354 25 7 -3.3769 -1.7873 6.1552 26 7 -2.6857 -2.7735 5.6923 27 7 -2.7697 -2.8129 4.4046 28 1 -2.3402 -3.4610 3.8247 29 6 -3.5561 -1.7974 4.0088 30 6 0.2252 -2.2711 1.3757 31 1 -0.4850 0.8401 -0.0004 32 1 2.9471 -3.5751 -0.1161 33 1 1.6657 -4.3481 0.8140 34 1 1.4230 -5.2627 -1.3395 35 1 1.7386 -3.7071 -2.1420 36 1 -0.7394 -4.5834 -2.0323 37 1 -0.4252 -2.8737 -1.6636 38 1 -0.2435 -4.7144 0.6469 39 1 -1.8733 -4.5121 -0.0600 40 1 -2.4156 -3.4206 1.9809 41 1 -3.6946 0.7279 2.8545 42 1 -4.9850 0.2773 1.7147 43 1 -6.2726 -0.6587 3.7030 44 1 -6.0621 1.1084 3.7135 45 1 -5.5828 -0.0460 5.9427 46 1 -4.2484 0.9572 5.3175 47 1 0.3787 -2.9458 2.2178 48 1 0.1038 -1.2499 1.7372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034364008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:39 Heat of formation + Delta-G solvation = 86.091669 kcal Electronic energy + Delta-G solvation = -30953.655137 eV Core-core repulsion = 27046.371942 eV Total energy + Delta-G solvation = -3907.283195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.52230 -39.72332 -37.96573 -36.54243 -34.33110 -33.81286 -33.21907 -31.00040 -30.65893 -30.11256 -29.51255 -26.21786 -24.83828 -24.24484 -23.34581 -22.92549 -22.38187 -20.59598 -20.08373 -19.57326 -18.92325 -18.08492 -16.91218 -16.68142 -16.04742 -15.61836 -15.35102 -14.91803 -14.54355 -14.26111 -14.00181 -13.89286 -13.77229 -13.51839 -13.41838 -12.95219 -12.55680 -12.34704 -12.20256 -11.94204 -11.63346 -11.45760 -11.39419 -11.32454 -11.26685 -11.10782 -10.77032 -10.72201 -10.64209 -10.38160 -10.30509 -10.18693 -9.90998 -9.83268 -9.59685 -9.51749 -9.34273 -8.77737 -8.58947 -8.27384 -6.71529 -5.67731 -3.10405 1.48191 2.46755 2.59822 3.15611 3.43594 3.50715 3.52366 3.53773 4.20297 4.42289 4.57033 4.62769 4.78277 4.82646 5.17941 5.19715 5.20992 5.33756 5.37333 5.47036 5.47279 5.53370 5.55805 5.74950 5.76713 5.86713 5.93758 5.98283 6.01749 6.11799 6.18904 6.21925 6.29768 6.31420 6.45616 6.47371 6.73754 6.77418 6.86837 6.92954 6.95655 7.08359 7.10889 7.43647 7.53068 7.86288 8.05987 8.40873 8.46673 8.77025 9.23893 9.90036 10.41369 11.37436 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.004526 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.623694 B = 6184.515827 C = 7132.860724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.011 3.989 3 Si 0.890 3.110 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.293 1.293 7 C -0.277 4.277 8 H 0.067 0.933 9 N -0.578 5.578 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.124 4.124 14 C 0.129 3.871 15 H 0.133 0.867 16 N -0.739 5.739 17 C 0.495 3.505 18 O -0.463 6.463 19 C -0.036 4.036 20 H 0.110 0.890 21 C -0.097 4.097 22 C -0.118 4.118 23 C -0.034 4.034 24 C -0.012 4.012 25 N -0.260 5.260 26 N -0.086 5.086 27 N -0.378 5.378 28 H 0.444 0.556 29 C 0.000 4.000 30 C 0.158 3.842 31 H 0.262 0.738 32 H 0.032 0.968 33 H 0.025 0.975 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.369 0.631 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.000 1.000 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.369 -6.283 4.363 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.191 4.191 3 Si 0.720 3.280 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.220 1.220 7 C -0.406 4.406 8 H 0.085 0.915 9 N -0.300 5.300 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.143 4.143 13 C -0.162 4.162 14 C 0.026 3.974 15 H 0.151 0.849 16 N -0.393 5.393 17 C 0.276 3.724 18 O -0.332 6.332 19 C -0.060 4.060 20 H 0.128 0.872 21 C -0.135 4.135 22 C -0.156 4.156 23 C -0.073 4.073 24 C -0.152 4.152 25 N -0.126 5.126 26 N -0.065 5.065 27 N -0.098 5.098 28 H 0.291 0.709 29 C -0.136 4.136 30 C 0.033 3.967 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.201 0.799 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.018 0.982 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.602 -5.925 5.287 14.060 hybrid contribution 0.239 0.220 -1.187 1.231 sum -11.364 -5.705 4.100 13.360 Atomic orbital electron populations 1.69845 1.03933 1.26356 1.50175 1.24969 0.95349 0.97951 1.00810 0.86503 0.79260 0.84713 0.77482 1.21783 1.20797 1.21961 1.19037 0.94729 0.85578 1.41232 0.91529 1.44027 1.34905 1.00965 1.50071 1.20322 0.96518 0.87764 0.92632 1.22828 0.95817 0.98199 1.01729 1.21276 0.95574 1.02128 0.95301 1.21382 0.99390 0.97197 0.98275 1.21288 0.84367 0.96762 0.94990 0.84936 1.46664 1.33258 1.09895 1.49467 1.20195 0.84008 0.84712 0.83457 1.90948 1.64056 1.32712 1.45463 1.20175 0.97693 1.00690 0.87414 0.87212 1.21449 0.99371 0.93180 0.99542 1.21674 0.97789 1.02849 0.93334 1.20003 0.96166 0.92737 0.98433 1.21685 1.04050 1.01178 0.88240 1.74809 1.08269 1.02809 1.26710 1.78563 1.19815 1.17807 0.90317 1.44818 1.34040 1.23002 1.07915 0.70865 1.21557 1.00305 0.93513 0.98269 1.20409 0.85471 1.01161 0.89676 0.92707 0.94953 0.95704 0.93855 0.92932 0.94380 0.90625 0.92036 0.92814 0.79930 0.89781 0.89821 0.91469 0.90199 0.89798 0.89695 0.98167 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.49 7.86 55.49 0.44 -23.05 16 2 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 3 Si 0.89 21.89 29.61 -169.99 -5.03 16.86 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.28 -7.38 9.61 -15.06 -0.14 -7.52 16 8 H 0.07 1.80 7.90 -52.49 -0.41 1.38 16 9 N -0.58 -13.68 2.61 -175.40 -0.46 -14.13 16 10 C 0.16 3.15 5.13 -4.93 -0.03 3.12 16 11 C -0.14 -2.58 6.40 -25.03 -0.16 -2.74 16 12 C -0.10 -1.85 5.65 -27.19 -0.15 -2.00 16 13 C -0.12 -1.99 5.25 -28.40 -0.15 -2.14 16 14 C 0.13 2.44 1.84 -71.39 -0.13 2.31 16 15 H 0.13 3.14 4.58 -51.93 -0.24 2.90 16 16 N -0.74 -11.13 4.44 -57.21 -0.25 -11.38 16 17 C 0.49 8.04 7.06 -10.98 -0.08 7.97 16 18 O -0.46 -9.79 13.42 5.56 0.07 -9.72 16 19 C -0.04 -0.43 2.91 -92.78 -0.27 -0.70 16 20 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 21 C -0.10 -1.10 4.66 -26.45 -0.12 -1.22 16 22 C -0.12 -1.01 5.90 -26.46 -0.16 -1.17 16 23 C -0.03 -0.35 6.30 -27.72 -0.17 -0.52 16 24 C -0.01 -0.16 7.11 -83.12 -0.59 -0.75 16 25 N -0.26 -4.10 12.40 33.16 0.41 -3.69 16 26 N -0.09 -1.32 13.40 60.35 0.81 -0.51 16 27 N -0.38 -4.86 6.76 33.39 0.23 -4.63 16 28 H 0.44 4.67 6.82 -190.08 -1.30 3.37 16 29 C 0.00 -0.01 6.38 -82.50 -0.53 -0.53 16 30 C 0.16 3.49 4.67 -5.20 -0.02 3.46 16 31 H 0.26 7.35 8.08 -40.82 -0.33 7.02 16 32 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 33 H 0.02 0.46 6.89 -51.93 -0.36 0.10 16 34 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.62 6.82 -51.93 -0.35 1.26 16 38 H 0.06 0.95 6.28 -51.93 -0.33 0.63 16 39 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16 40 H 0.37 4.17 6.65 -40.82 -0.27 3.90 16 41 H 0.08 1.17 7.75 -51.93 -0.40 0.77 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.00 0.01 8.13 -51.93 -0.42 -0.42 16 48 H 0.09 2.49 6.03 -51.92 -0.31 2.18 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -31.38 360.73 -9.30 -40.68 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.16 Total: 6.38 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.79 Total: -2.23 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 1.17 Total: -57.40 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.38 -9.30 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034364008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.773 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds