Wall clock time and date at job start Tue Mar 31 2020 18:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48498 * 109.46948 * 89.99982 * 3 2 1 5 5 H 1.48496 * 109.46819 * 210.00021 * 3 2 1 6 6 H 1.48504 * 109.47067 * 329.99911 * 3 2 1 7 7 C 1.38811 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00091 * 158.15400 * 7 2 1 9 9 N 1.36940 * 119.99987 * 338.15208 * 7 2 1 10 10 C 1.43438 * 120.53535 * 156.89859 * 9 7 2 11 11 C 1.54396 * 116.38994 * 271.73048 * 10 9 7 12 12 C 1.54839 * 110.07341 * 318.64985 * 11 10 9 13 13 C 1.50127 * 110.81729 * 321.08006 * 12 11 10 14 14 C 1.52523 * 105.41727 * 97.67749 * 13 12 11 15 15 H 1.09003 * 108.39636 * 31.74991 * 14 13 12 16 16 N 1.46502 * 108.52090 * 149.35261 * 14 13 12 17 17 C 1.34781 * 119.99861 * 209.72279 * 16 14 13 18 18 O 1.21281 * 119.99894 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99921 * 180.02562 * 17 16 14 20 20 H 1.08998 * 109.68491 * 299.45255 * 19 17 16 21 21 C 1.53430 * 109.69303 * 178.86504 * 19 17 16 22 22 C 1.53110 * 109.55103 * 190.56949 * 21 19 17 23 23 C 1.53418 * 109.57540 * 70.06729 * 22 21 19 24 24 C 1.50596 * 108.33765 * 310.18426 * 23 22 21 25 25 N 1.32907 * 129.16227 * 196.60658 * 24 23 22 26 26 N 1.29025 * 108.63556 * 179.77621 * 25 24 23 27 27 N 1.29110 * 110.25637 * 0.02562 * 26 25 24 28 28 H 0.96994 * 126.00521 * 180.02562 * 27 26 25 29 29 C 1.34396 * 107.98595 * 0.07581 * 27 26 25 30 30 C 1.46235 * 114.27793 * 270.59257 * 14 13 12 31 31 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 32 32 H 1.09001 * 108.15639 * 33.31258 * 10 9 7 33 33 H 1.09004 * 108.15751 * 149.87175 * 10 9 7 34 34 H 1.09008 * 109.44241 * 198.43618 * 11 10 9 35 35 H 1.08996 * 109.24234 * 78.73810 * 11 10 9 36 36 H 1.09001 * 109.21075 * 200.73023 * 12 11 10 37 37 H 1.09005 * 109.17049 * 81.39831 * 12 11 10 38 38 H 1.09002 * 110.24618 * 338.70172 * 13 12 11 39 39 H 1.09002 * 110.36550 * 216.71769 * 13 12 11 40 40 H 0.96999 * 120.00048 * 29.71905 * 16 14 13 41 41 H 1.09006 * 109.45838 * 310.59649 * 21 19 17 42 42 H 1.09000 * 109.45876 * 70.54567 * 21 19 17 43 43 H 1.08999 * 109.45471 * 310.03931 * 22 21 19 44 44 H 1.08997 * 109.45526 * 190.09997 * 22 21 19 45 45 H 1.09002 * 109.69454 * 190.47601 * 23 22 21 46 46 H 1.08999 * 109.69190 * 69.89785 * 23 22 21 47 47 H 1.08994 * 109.84646 * 298.90436 * 30 14 13 48 48 H 1.09008 * 109.89862 * 177.94555 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0321 -1.2359 -0.3475 9 7 1.3993 -2.3453 0.4424 10 6 1.8668 -3.6327 0.0165 11 6 1.2574 -4.1865 -1.2896 12 6 -0.2635 -3.8988 -1.3302 13 6 -0.8770 -4.0789 0.0281 14 6 -0.9615 -2.6774 0.6239 15 1 -1.1169 -1.9671 -0.1882 16 7 -2.1207 -2.6208 1.5179 17 6 -2.7774 -1.4576 1.6971 18 8 -2.4084 -0.4575 1.1185 19 6 -3.9696 -1.3992 2.6172 20 1 -4.7450 -2.0752 2.2567 21 6 -4.5143 0.0342 2.6673 22 6 -5.5477 0.1506 3.7911 23 6 -4.8418 0.0584 5.1501 24 6 -3.9413 -1.1486 5.1354 25 7 -3.3769 -1.7873 6.1552 26 7 -2.6857 -2.7735 5.6923 27 7 -2.7697 -2.8129 4.4046 28 1 -2.3402 -3.4610 3.8247 29 6 -3.5561 -1.7974 4.0088 30 6 0.2252 -2.2711 1.3757 31 1 -0.4850 0.8401 -0.0004 32 1 2.9471 -3.5751 -0.1161 33 1 1.6657 -4.3481 0.8140 34 1 1.4230 -5.2627 -1.3395 35 1 1.7386 -3.7071 -2.1420 36 1 -0.7394 -4.5834 -2.0323 37 1 -0.4252 -2.8737 -1.6636 38 1 -0.2435 -4.7144 0.6469 39 1 -1.8733 -4.5121 -0.0600 40 1 -2.4156 -3.4206 1.9809 41 1 -3.6946 0.7279 2.8545 42 1 -4.9850 0.2773 1.7147 43 1 -6.2726 -0.6587 3.7030 44 1 -6.0621 1.1084 3.7135 45 1 -5.5828 -0.0460 5.9427 46 1 -4.2484 0.9572 5.3175 47 1 0.3787 -2.9458 2.2178 48 1 0.1038 -1.2499 1.7372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034364008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:38 Heat of formation + Delta-G solvation = 64.850118 kcal Electronic energy + Delta-G solvation = -30954.576240 eV Core-core repulsion = 27046.371942 eV Total energy + Delta-G solvation = -3908.204298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.58373 -41.08536 -39.38550 -37.59237 -35.84704 -35.10199 -34.74796 -32.66468 -32.00503 -31.11523 -30.78984 -27.99352 -26.00102 -25.76292 -24.68960 -24.10718 -23.53001 -21.93152 -21.58170 -20.56975 -20.38552 -19.20608 -18.57341 -18.03399 -17.21317 -17.04575 -16.78025 -16.42437 -16.00440 -15.52380 -15.41127 -15.09498 -15.01974 -14.77469 -14.63039 -14.29909 -13.99711 -13.91111 -13.48323 -13.23516 -13.12104 -13.09667 -12.70818 -12.66547 -12.46526 -12.40579 -12.19263 -12.04704 -11.96692 -11.91334 -11.65766 -11.58825 -11.35399 -11.32009 -11.23636 -11.11751 -10.63817 -10.43400 -9.91394 -9.83370 -8.60426 -7.72246 -5.14984 0.42073 1.38688 1.41270 1.45590 1.51187 1.59648 1.92341 2.29138 2.55501 3.23643 3.35726 3.42218 3.60725 3.71370 3.92621 3.94808 4.01149 4.19119 4.26084 4.27732 4.33411 4.36406 4.48419 4.58712 4.61329 4.66306 4.68951 4.79115 4.91725 4.99999 5.01364 5.04646 5.13980 5.20595 5.27440 5.33279 5.33780 5.40697 5.43459 5.47874 5.61534 5.63898 5.74343 5.77676 5.85288 5.95025 6.45197 6.73460 7.20568 7.32290 7.56375 7.95126 8.43787 9.25977 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.004526 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.623694 B = 6184.515827 C = 7132.860724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C -0.032 4.032 3 Si 0.936 3.064 4 H -0.299 1.299 5 H -0.275 1.275 6 H -0.299 1.299 7 C -0.284 4.284 8 H 0.056 0.944 9 N -0.595 5.595 10 C 0.150 3.850 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.113 4.113 14 C 0.141 3.859 15 H 0.087 0.913 16 N -0.727 5.727 17 C 0.490 3.510 18 O -0.517 6.517 19 C -0.021 4.021 20 H 0.151 0.849 21 C -0.097 4.097 22 C -0.106 4.106 23 C -0.037 4.037 24 C -0.018 4.018 25 N -0.288 5.288 26 N -0.109 5.109 27 N -0.368 5.368 28 H 0.453 0.547 29 C -0.001 4.001 30 C 0.166 3.834 31 H 0.247 0.753 32 H 0.023 0.977 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.016 0.984 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 -8.567 4.582 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.232 4.232 3 Si 0.766 3.234 4 H -0.227 1.227 5 H -0.200 1.200 6 H -0.226 1.226 7 C -0.414 4.414 8 H 0.074 0.926 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.178 4.178 12 C -0.139 4.139 13 C -0.151 4.151 14 C 0.037 3.963 15 H 0.105 0.895 16 N -0.382 5.382 17 C 0.273 3.727 18 O -0.390 6.390 19 C -0.044 4.044 20 H 0.168 0.832 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.076 4.076 24 C -0.159 4.159 25 N -0.153 5.153 26 N -0.087 5.087 27 N -0.089 5.089 28 H 0.302 0.698 29 C -0.138 4.138 30 C 0.041 3.959 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.228 0.772 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.098 0.902 47 H 0.034 0.966 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.487 -8.277 5.526 16.762 hybrid contribution 0.898 0.913 -1.250 1.789 sum -12.589 -7.364 4.276 15.199 Atomic orbital electron populations 1.70048 1.04232 1.25341 1.50749 1.25489 0.96082 0.99892 1.01759 0.85771 0.78583 0.82305 0.76695 1.22657 1.20033 1.22646 1.19122 0.94480 0.87077 1.40723 0.92577 1.44129 1.35534 1.01419 1.50638 1.20469 0.96068 0.86667 0.94588 1.22735 0.95663 1.00080 0.99300 1.21207 0.95753 1.00005 0.96938 1.21325 1.01518 0.95212 0.97001 1.20707 0.84182 0.97704 0.93724 0.89544 1.46396 1.32039 1.10840 1.48879 1.20952 0.84630 0.83960 0.83124 1.90940 1.65739 1.34580 1.47730 1.20179 0.96412 1.02170 0.85660 0.83183 1.21458 0.99093 0.91867 1.01141 1.21645 0.96950 1.04966 0.90801 1.20189 0.96141 0.91089 1.00170 1.22281 1.04069 1.01713 0.87840 1.74783 1.09145 1.03520 1.27873 1.78507 1.20569 1.18396 0.91251 1.44809 1.33595 1.23033 1.07501 0.69815 1.21722 1.00173 0.93370 0.98506 1.20255 0.86581 0.98834 0.90221 0.94277 0.95885 0.93371 0.90068 0.94851 0.91508 0.95287 0.90471 0.89472 0.77245 0.93203 0.89224 0.89322 0.88022 0.87933 0.90174 0.96630 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.29 7.86 21.65 0.17 -49.12 16 2 C -0.03 -1.79 4.85 84.86 0.41 -1.38 16 3 Si 0.94 46.69 29.61 68.60 2.03 48.72 16 4 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.28 -15.59 9.61 84.03 0.81 -14.78 16 8 H 0.06 3.13 7.90 -2.91 -0.02 3.11 16 9 N -0.59 -28.42 2.61 -708.85 -1.85 -30.28 16 10 C 0.15 5.84 5.13 87.42 0.45 6.28 16 11 C -0.14 -4.61 6.40 31.70 0.20 -4.41 16 12 C -0.10 -3.36 5.65 30.30 0.17 -3.19 16 13 C -0.11 -3.27 5.25 29.51 0.16 -3.11 16 14 C 0.14 5.27 1.84 42.75 0.08 5.35 16 15 H 0.09 4.21 4.58 -2.39 -0.01 4.20 16 16 N -0.73 -20.91 4.44 -453.30 -2.01 -22.92 16 17 C 0.49 15.74 7.06 87.66 0.62 16.36 16 18 O -0.52 -22.74 13.42 -3.03 -0.04 -22.78 16 19 C -0.02 -0.45 2.91 -12.19 -0.04 -0.49 16 20 H 0.15 2.14 8.14 -2.39 -0.02 2.13 16 21 C -0.10 -2.08 4.66 30.78 0.14 -1.93 16 22 C -0.11 -1.51 5.90 30.77 0.18 -1.33 16 23 C -0.04 -0.68 6.30 29.96 0.19 -0.49 16 24 C -0.02 -0.48 7.11 41.75 0.30 -0.18 16 25 N -0.29 -8.87 12.40 -48.99 -0.61 -9.48 16 26 N -0.11 -3.24 13.40 37.02 0.50 -2.74 16 27 N -0.37 -8.91 6.76 -48.27 -0.33 -9.23 16 28 H 0.45 8.58 6.82 -219.69 -1.50 7.09 16 29 C 0.00 -0.03 6.38 41.50 0.26 0.24 16 30 C 0.17 7.39 4.67 83.58 0.39 7.78 16 31 H 0.25 14.65 8.08 -92.71 -0.75 13.90 16 32 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 33 H 0.05 1.64 6.89 -2.38 -0.02 1.63 16 34 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.03 1.24 6.82 -2.38 -0.02 1.22 16 38 H 0.08 2.04 6.28 -2.39 -0.01 2.03 16 39 H 0.09 1.98 8.03 -2.39 -0.02 1.96 16 40 H 0.39 7.71 6.65 -92.71 -0.62 7.10 16 41 H 0.05 1.42 7.75 -2.38 -0.02 1.40 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.02 0.64 8.13 -2.39 -0.02 0.62 16 48 H 0.05 2.60 6.03 -2.38 -0.01 2.59 16 Total: -1.00 -73.80 360.73 1.09 -72.71 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -1.09 Total: 20.39 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 4.32 Total: 4.73 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -4.13 Total: -123.77 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -73.80 1.09 -72.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034364008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.559 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds