Wall clock time and date at job start Tue Mar 31 2020 18:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 195.66371 * 7 2 1 9 9 N 1.36937 * 120.00070 * 15.66260 * 7 2 1 10 10 C 1.44581 * 118.64433 * 206.50010 * 9 7 2 11 11 C 1.54869 * 109.59866 * 270.72503 * 10 9 7 12 12 C 1.47089 * 110.32142 * 288.73233 * 11 10 9 13 13 C 1.52571 * 114.32746 * 62.80611 * 12 11 10 14 14 C 1.50884 * 109.37639 * 274.97477 * 13 12 11 15 15 H 1.09003 * 109.36252 * 331.70114 * 14 13 12 16 16 N 1.46500 * 109.36425 * 212.08815 * 14 13 12 17 17 C 1.34782 * 119.99839 * 155.00041 * 16 14 13 18 18 O 1.21594 * 119.99923 * 359.97438 * 17 16 14 19 19 C 1.47522 * 119.99806 * 179.97438 * 17 16 14 20 20 C 1.36595 * 125.77036 * 179.71404 * 19 17 16 21 21 N 1.34810 * 106.84139 * 179.89938 * 20 19 17 22 22 C 1.46499 * 126.59366 * 180.15174 * 21 20 19 23 23 C 1.53000 * 109.46961 * 125.27164 * 22 21 20 24 24 C 1.52998 * 117.49796 * 243.61717 * 23 22 21 25 25 C 1.53000 * 60.00247 * 252.51283 * 24 23 22 26 26 N 1.40210 * 106.81054 * 0.35531 * 21 20 19 27 27 N 1.28763 * 108.36672 * 359.77831 * 26 21 20 28 28 C 1.47600 * 118.64417 * 26.52166 * 9 7 2 29 29 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.45215 * 150.69026 * 10 9 7 31 31 H 1.09000 * 109.45200 * 30.76258 * 10 9 7 32 32 H 1.09001 * 109.32860 * 168.47334 * 11 10 9 33 33 H 1.08992 * 109.18742 * 48.90816 * 11 10 9 34 34 H 1.09003 * 108.51524 * 301.55024 * 12 11 10 35 35 H 1.09000 * 108.51499 * 184.05578 * 12 11 10 36 36 H 1.09002 * 109.48861 * 34.94752 * 13 12 11 37 37 H 1.08999 * 109.49259 * 154.99956 * 13 12 11 38 38 H 0.97000 * 120.00182 * 334.99769 * 16 14 13 39 39 H 1.08008 * 126.57954 * 0.03619 * 20 19 17 40 40 H 1.09000 * 109.46785 * 245.26696 * 22 21 20 41 41 H 1.08999 * 109.47511 * 5.27387 * 22 21 20 42 42 H 1.08993 * 115.55353 * 29.32695 * 23 22 21 43 43 H 1.09004 * 117.49983 * 0.02562 * 24 23 22 44 44 H 1.09005 * 117.49729 * 145.01869 * 24 23 22 45 45 H 1.08996 * 117.49539 * 252.51046 * 25 24 23 46 46 H 1.08995 * 117.49614 * 107.49263 * 25 24 23 47 47 H 1.09001 * 108.95052 * 258.55619 * 28 9 7 48 48 H 1.08999 * 108.95056 * 17.17965 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3637 -2.3662 -0.3191 10 6 1.8692 -3.6097 0.2178 11 6 2.9228 -4.2032 -0.7497 12 6 2.2707 -4.7081 -1.9677 13 6 1.5624 -3.6370 -2.7916 14 6 0.1711 -3.4256 -2.2476 15 1 -0.1802 -4.3480 -1.7850 16 7 -0.7293 -3.0617 -3.3445 17 6 -2.0507 -3.3064 -3.2411 18 8 -2.4954 -3.8296 -2.2376 19 6 -2.9574 -2.9394 -4.3454 20 6 -4.3087 -3.1373 -4.3682 21 7 -4.7532 -2.6616 -5.5487 22 6 -6.1400 -2.6543 -6.0209 23 6 -6.5397 -1.2288 -6.4069 24 6 -7.6598 -0.5667 -5.6019 25 6 -7.9194 -1.0282 -7.0374 26 7 -3.6324 -2.1795 -6.2395 27 7 -2.5926 -2.3593 -5.5016 28 6 0.1797 -2.2996 -1.1980 29 1 -0.4850 0.8400 0.0004 30 1 1.0467 -4.3152 0.3357 31 1 2.3306 -3.4253 1.1880 32 1 3.4465 -5.0213 -0.2552 33 1 3.6390 -3.4270 -1.0192 34 1 1.5396 -5.4640 -1.6809 35 1 3.0265 -5.1827 -2.5936 36 1 2.1219 -2.7034 -2.7322 37 1 1.5014 -3.9590 -3.8312 38 1 -0.3745 -2.6446 -4.1451 39 1 -4.9067 -3.5865 -3.5890 40 1 -6.2311 -3.3052 -6.8905 41 1 -6.7958 -3.0134 -5.2279 42 1 -5.7283 -0.5919 -6.7587 43 1 -8.1116 -1.1466 -4.7970 44 1 -7.5851 0.5061 -5.4238 45 1 -8.0155 -0.2590 -7.8036 46 1 -8.5422 -1.9117 -7.1771 47 1 -0.7195 -2.3786 -0.5870 48 1 0.1734 -1.3379 -1.7111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034461865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:35 Heat of formation + Delta-G solvation = 108.527178 kcal Electronic energy + Delta-G solvation = -28819.306103 eV Core-core repulsion = 24912.995785 eV Total energy + Delta-G solvation = -3906.310318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20890 -39.27258 -38.14422 -37.48000 -34.45046 -34.13604 -33.44623 -31.14456 -30.68385 -29.82213 -28.07639 -25.98834 -24.32341 -23.81168 -22.97719 -22.79317 -22.31201 -21.28622 -20.18198 -19.77880 -19.12160 -18.07806 -16.60262 -16.53810 -16.19929 -15.72236 -15.41508 -15.18711 -14.75126 -14.59456 -14.33568 -14.10640 -13.96731 -13.66176 -13.29234 -13.17124 -12.72954 -12.45612 -12.36355 -12.08305 -12.01735 -11.99492 -11.34273 -11.22755 -11.06666 -11.03211 -10.92570 -10.73341 -10.64278 -10.38898 -10.34202 -10.20185 -10.09500 -9.88824 -9.72657 -9.66682 -9.42456 -9.26455 -8.45209 -8.29563 -6.57645 -5.69496 -3.14291 1.10594 1.84578 1.87254 3.21613 3.42048 3.48463 3.49002 3.51003 3.66753 3.86492 4.24603 4.25212 4.42071 4.47561 4.56420 4.72122 4.80428 4.88112 5.01479 5.14139 5.30111 5.33043 5.40037 5.41353 5.54045 5.60053 5.64968 5.70962 5.77378 5.83360 6.01531 6.10420 6.25932 6.28584 6.40873 6.55339 6.68909 6.73002 6.73983 6.87682 6.97948 7.04741 7.17809 7.46271 7.81488 7.85782 7.90909 8.09414 8.54089 8.62843 9.31142 9.98525 10.43780 11.36643 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002898 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.552411 B = 9658.324191 C =11062.086172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.587 5.587 10 C 0.155 3.845 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.116 4.116 14 C 0.120 3.880 15 H 0.075 0.925 16 N -0.700 5.700 17 C 0.601 3.399 18 O -0.539 6.539 19 C -0.091 4.091 20 C 0.090 3.910 21 N -0.361 5.361 22 C 0.156 3.844 23 C -0.176 4.176 24 C -0.175 4.175 25 C -0.166 4.166 26 N -0.068 5.068 27 N -0.204 5.204 28 C 0.174 3.826 29 H 0.253 0.747 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.403 0.597 39 H 0.204 0.796 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.032 0.968 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 -7.394 -13.675 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.027 3.973 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.154 4.154 14 C 0.015 3.985 15 H 0.093 0.907 16 N -0.349 5.349 17 C 0.384 3.616 18 O -0.415 6.415 19 C -0.230 4.230 20 C -0.066 4.066 21 N -0.146 5.146 22 C 0.035 3.965 23 C -0.195 4.195 24 C -0.212 4.212 25 C -0.203 4.203 26 N -0.048 5.048 27 N -0.078 5.078 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.237 0.763 39 H 0.220 0.780 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.050 0.950 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.437 -6.983 -14.215 20.770 hybrid contribution 0.044 0.771 0.394 0.867 sum -13.394 -6.212 -13.820 20.223 Atomic orbital electron populations 1.70080 1.05137 1.25405 1.53707 1.25049 0.95232 0.98314 1.00808 0.86424 0.78915 0.83669 0.78065 1.21073 1.21763 1.20954 1.19140 0.92364 0.84930 1.42435 0.91692 1.43524 1.32484 1.02050 1.52746 1.20737 0.94095 0.88251 0.94266 1.21508 1.00218 0.99684 0.97411 1.20210 0.98949 0.97430 0.96972 1.21284 0.95627 1.00930 0.97601 1.21825 0.87936 1.00770 0.87948 0.90737 1.45950 1.06434 1.61620 1.20920 1.16711 0.81968 0.78635 0.84304 1.90803 1.76196 1.44412 1.30105 1.21653 0.93261 1.11307 0.96824 1.23370 0.95718 0.97630 0.89876 1.50403 1.09597 1.41687 1.12950 1.21556 0.76030 0.97310 1.01642 1.22543 0.94063 0.96448 1.06449 1.23151 1.01473 1.01858 0.94748 1.22986 0.96947 1.03728 0.96659 1.81931 0.86132 1.19902 1.16845 1.74640 1.21172 1.09787 1.02166 1.21316 0.89118 0.95197 0.89566 0.93709 0.94916 0.93606 0.93476 0.92076 0.93239 0.93726 0.90002 0.92946 0.76268 0.77954 0.88037 0.87658 0.86124 0.88253 0.88236 0.88089 0.88266 0.94971 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 11.01 55.49 0.61 -25.99 16 2 C 0.00 0.14 4.87 -17.43 -0.08 0.05 16 3 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -7.07 9.44 -15.06 -0.14 -7.21 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.67 2.27 -172.09 -0.39 -15.06 16 10 C 0.15 3.29 5.66 -4.08 -0.02 3.26 16 11 C -0.15 -2.63 5.74 -28.58 -0.16 -2.79 16 12 C -0.10 -1.61 5.15 -29.79 -0.15 -1.76 16 13 C -0.12 -2.05 5.06 -28.01 -0.14 -2.19 16 14 C 0.12 2.38 2.27 -68.50 -0.16 2.23 16 15 H 0.07 1.54 6.75 -51.93 -0.35 1.19 16 16 N -0.70 -12.70 4.97 -55.41 -0.28 -12.98 16 17 C 0.60 11.09 7.78 -12.47 -0.10 10.99 16 18 O -0.54 -11.35 16.53 5.28 0.09 -11.26 16 19 C -0.09 -1.42 6.99 -83.55 -0.58 -2.00 16 20 C 0.09 1.09 11.27 -16.84 -0.19 0.90 16 21 N -0.36 -3.88 3.69 -61.06 -0.23 -4.10 16 22 C 0.16 0.98 6.82 -4.04 -0.03 0.95 16 23 C -0.18 -1.20 5.93 -90.62 -0.54 -1.74 16 24 C -0.18 -1.04 10.18 -26.73 -0.27 -1.31 16 25 C -0.17 -0.80 10.25 -26.73 -0.27 -1.08 16 26 N -0.07 -0.95 13.48 60.35 0.81 -0.14 16 27 N -0.20 -3.22 12.04 32.85 0.40 -2.82 16 28 C 0.17 4.30 4.25 -2.95 -0.01 4.28 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.80 7.36 -51.93 -0.38 0.42 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.63 7.48 -51.93 -0.39 1.24 16 37 H 0.05 0.81 7.94 -51.93 -0.41 0.39 16 38 H 0.40 6.66 8.23 -40.82 -0.34 6.33 16 39 H 0.20 1.82 8.06 -52.48 -0.42 1.39 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.40 7.82 -51.93 -0.41 -0.01 16 42 H 0.12 1.09 7.94 -51.93 -0.41 0.67 16 43 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.03 0.91 8.03 -51.93 -0.42 0.50 16 48 H 0.08 2.13 6.31 -51.93 -0.33 1.80 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -33.42 389.74 -8.61 -42.03 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.61 Total: 4.90 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.86 Total: 2.57 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.93 Total: -61.09 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.42 -8.61 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034461865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.556 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds