Wall clock time and date at job start Tue Mar 31 2020 18:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 195.66371 * 7 2 1 9 9 N 1.36937 * 120.00070 * 15.66260 * 7 2 1 10 10 C 1.44581 * 118.64433 * 206.50010 * 9 7 2 11 11 C 1.54869 * 109.59866 * 270.72503 * 10 9 7 12 12 C 1.47089 * 110.32142 * 288.73233 * 11 10 9 13 13 C 1.52571 * 114.32746 * 62.80611 * 12 11 10 14 14 C 1.50884 * 109.37639 * 274.97477 * 13 12 11 15 15 H 1.09003 * 109.36252 * 331.70114 * 14 13 12 16 16 N 1.46500 * 109.36425 * 212.08815 * 14 13 12 17 17 C 1.34782 * 119.99839 * 155.00041 * 16 14 13 18 18 O 1.21594 * 119.99923 * 359.97438 * 17 16 14 19 19 C 1.47522 * 119.99806 * 179.97438 * 17 16 14 20 20 C 1.36595 * 125.77036 * 179.71404 * 19 17 16 21 21 N 1.34810 * 106.84139 * 179.89938 * 20 19 17 22 22 C 1.46499 * 126.59366 * 180.15174 * 21 20 19 23 23 C 1.53000 * 109.46961 * 125.27164 * 22 21 20 24 24 C 1.52998 * 117.49796 * 243.61717 * 23 22 21 25 25 C 1.53000 * 60.00247 * 252.51283 * 24 23 22 26 26 N 1.40210 * 106.81054 * 0.35531 * 21 20 19 27 27 N 1.28763 * 108.36672 * 359.77831 * 26 21 20 28 28 C 1.47600 * 118.64417 * 26.52166 * 9 7 2 29 29 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.45215 * 150.69026 * 10 9 7 31 31 H 1.09000 * 109.45200 * 30.76258 * 10 9 7 32 32 H 1.09001 * 109.32860 * 168.47334 * 11 10 9 33 33 H 1.08992 * 109.18742 * 48.90816 * 11 10 9 34 34 H 1.09003 * 108.51524 * 301.55024 * 12 11 10 35 35 H 1.09000 * 108.51499 * 184.05578 * 12 11 10 36 36 H 1.09002 * 109.48861 * 34.94752 * 13 12 11 37 37 H 1.08999 * 109.49259 * 154.99956 * 13 12 11 38 38 H 0.97000 * 120.00182 * 334.99769 * 16 14 13 39 39 H 1.08008 * 126.57954 * 0.03619 * 20 19 17 40 40 H 1.09000 * 109.46785 * 245.26696 * 22 21 20 41 41 H 1.08999 * 109.47511 * 5.27387 * 22 21 20 42 42 H 1.08993 * 115.55353 * 29.32695 * 23 22 21 43 43 H 1.09004 * 117.49983 * 0.02562 * 24 23 22 44 44 H 1.09005 * 117.49729 * 145.01869 * 24 23 22 45 45 H 1.08996 * 117.49539 * 252.51046 * 25 24 23 46 46 H 1.08995 * 117.49614 * 107.49263 * 25 24 23 47 47 H 1.09001 * 108.95052 * 258.55619 * 28 9 7 48 48 H 1.08999 * 108.95056 * 17.17965 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3637 -2.3662 -0.3191 10 6 1.8692 -3.6097 0.2178 11 6 2.9228 -4.2032 -0.7497 12 6 2.2707 -4.7081 -1.9677 13 6 1.5624 -3.6370 -2.7916 14 6 0.1711 -3.4256 -2.2476 15 1 -0.1802 -4.3480 -1.7850 16 7 -0.7293 -3.0617 -3.3445 17 6 -2.0507 -3.3064 -3.2411 18 8 -2.4954 -3.8296 -2.2376 19 6 -2.9574 -2.9394 -4.3454 20 6 -4.3087 -3.1373 -4.3682 21 7 -4.7532 -2.6616 -5.5487 22 6 -6.1400 -2.6543 -6.0209 23 6 -6.5397 -1.2288 -6.4069 24 6 -7.6598 -0.5667 -5.6019 25 6 -7.9194 -1.0282 -7.0374 26 7 -3.6324 -2.1795 -6.2395 27 7 -2.5926 -2.3593 -5.5016 28 6 0.1797 -2.2996 -1.1980 29 1 -0.4850 0.8400 0.0004 30 1 1.0467 -4.3152 0.3357 31 1 2.3306 -3.4253 1.1880 32 1 3.4465 -5.0213 -0.2552 33 1 3.6390 -3.4270 -1.0192 34 1 1.5396 -5.4640 -1.6809 35 1 3.0265 -5.1827 -2.5936 36 1 2.1219 -2.7034 -2.7322 37 1 1.5014 -3.9590 -3.8312 38 1 -0.3745 -2.6446 -4.1451 39 1 -4.9067 -3.5865 -3.5890 40 1 -6.2311 -3.3052 -6.8905 41 1 -6.7958 -3.0134 -5.2279 42 1 -5.7283 -0.5919 -6.7587 43 1 -8.1116 -1.1466 -4.7970 44 1 -7.5851 0.5061 -5.4238 45 1 -8.0155 -0.2590 -7.8036 46 1 -8.5422 -1.9117 -7.1771 47 1 -0.7195 -2.3786 -0.5870 48 1 0.1734 -1.3379 -1.7111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034461865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:34 Heat of formation + Delta-G solvation = 86.550450 kcal Electronic energy + Delta-G solvation = -28820.259085 eV Core-core repulsion = 24912.995785 eV Total energy + Delta-G solvation = -3907.263301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.25071 -40.79280 -39.15180 -38.62348 -36.05217 -35.27670 -35.00287 -32.68088 -32.34721 -31.23091 -28.87303 -27.90330 -25.97089 -25.38047 -24.14981 -23.48010 -23.26820 -22.18565 -21.56308 -21.11298 -20.75150 -19.14162 -18.57405 -17.48535 -17.29351 -17.23192 -16.94858 -16.20849 -15.99758 -15.84037 -15.63827 -15.37684 -15.18602 -15.04276 -14.81872 -14.34947 -14.26729 -14.06975 -13.74255 -13.34957 -13.00428 -12.92524 -12.84403 -12.78033 -12.44826 -12.42845 -12.26585 -12.20281 -12.05344 -11.85476 -11.64369 -11.52653 -11.38203 -11.33583 -11.16983 -11.10096 -10.97747 -10.47608 -10.39046 -9.97180 -8.63826 -7.82672 -5.30644 0.13023 0.61392 1.06055 1.45638 1.48254 1.54710 2.10558 2.30606 2.53202 2.77546 3.16381 3.23438 3.31124 3.65894 3.77124 3.86039 3.91182 3.95306 3.97259 4.03713 4.09468 4.13838 4.32150 4.42125 4.44205 4.48647 4.53776 4.65893 4.76974 4.78564 4.87120 4.98001 4.98113 5.10678 5.12009 5.16318 5.21658 5.31756 5.33761 5.40141 5.45499 5.48409 5.57238 5.65300 5.71819 5.82841 6.40660 6.48668 6.89840 7.15471 7.21531 7.95550 8.36003 9.21063 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002898 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.552411 B = 9658.324191 C =11062.086172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.600 5.600 10 C 0.146 3.854 11 C -0.133 4.133 12 C -0.099 4.099 13 C -0.109 4.109 14 C 0.137 3.863 15 H 0.069 0.931 16 N -0.699 5.699 17 C 0.600 3.400 18 O -0.571 6.571 19 C -0.122 4.122 20 C 0.110 3.890 21 N -0.344 5.344 22 C 0.147 3.853 23 C -0.192 4.192 24 C -0.182 4.182 25 C -0.146 4.146 26 N -0.083 5.083 27 N -0.225 5.225 28 C 0.195 3.805 29 H 0.245 0.755 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.410 0.590 39 H 0.236 0.764 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.122 0.878 47 H -0.020 1.020 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 -9.022 -15.103 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.323 5.323 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.136 4.136 13 C -0.147 4.147 14 C 0.031 3.969 15 H 0.087 0.913 16 N -0.349 5.349 17 C 0.385 3.615 18 O -0.450 6.450 19 C -0.262 4.262 20 C -0.047 4.047 21 N -0.128 5.128 22 C 0.028 3.972 23 C -0.211 4.211 24 C -0.219 4.219 25 C -0.184 4.184 26 N -0.064 5.064 27 N -0.099 5.099 28 C 0.068 3.932 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.252 0.748 40 H 0.141 0.859 41 H 0.158 0.842 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.106 0.894 45 H 0.119 0.881 46 H 0.141 0.859 47 H -0.002 1.002 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.779 -8.627 -15.687 22.591 hybrid contribution 0.028 1.264 0.850 1.524 sum -13.751 -7.363 -14.836 21.527 Atomic orbital electron populations 1.70281 1.06703 1.25431 1.55724 1.25812 0.95922 1.01535 1.01408 0.85395 0.77525 0.79442 0.78434 1.20265 1.22547 1.19975 1.19482 0.92663 0.85890 1.41062 0.91182 1.43731 1.32225 1.02866 1.53443 1.20965 0.95097 0.86963 0.95040 1.21330 0.98665 1.00069 0.97198 1.20222 0.99805 0.96973 0.96642 1.21228 0.93407 1.00520 0.99521 1.21440 0.89983 0.98061 0.87405 0.91332 1.45894 1.06574 1.61747 1.20638 1.17091 0.82117 0.77707 0.84608 1.90771 1.76706 1.45956 1.31589 1.21406 0.94304 1.13876 0.96617 1.23801 0.94643 0.95908 0.90392 1.50703 1.10481 1.39633 1.12026 1.22094 0.73824 0.97472 1.03789 1.22441 0.94184 0.96463 1.08060 1.23238 1.01188 1.01466 0.96031 1.23088 0.95161 1.04338 0.95794 1.81841 0.86837 1.20465 1.17247 1.74606 1.22360 1.10465 1.02455 1.20909 0.87112 0.95501 0.89634 0.94586 0.94817 0.94286 0.90272 0.93328 0.92522 0.90386 0.92383 0.90016 0.75340 0.74792 0.85859 0.84183 0.88981 0.86807 0.89407 0.88088 0.85949 1.00163 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.01 11.01 21.65 0.24 -57.77 16 2 C -0.05 -2.98 4.87 84.86 0.41 -2.56 16 3 Si 0.96 46.31 29.58 68.60 2.03 48.34 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.26 -14.54 9.44 84.03 0.79 -13.74 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.60 -30.88 2.27 -698.38 -1.59 -32.47 16 10 C 0.15 6.20 5.66 87.38 0.49 6.69 16 11 C -0.13 -4.44 5.74 29.39 0.17 -4.27 16 12 C -0.10 -2.97 5.15 28.61 0.15 -2.82 16 13 C -0.11 -3.71 5.06 29.76 0.15 -3.56 16 14 C 0.14 5.53 2.27 44.62 0.10 5.63 16 15 H 0.07 2.88 6.75 -2.39 -0.02 2.86 16 16 N -0.70 -26.04 4.97 -447.47 -2.23 -28.27 16 17 C 0.60 22.72 7.78 86.69 0.67 23.39 16 18 O -0.57 -24.78 16.53 -4.01 -0.07 -24.84 16 19 C -0.12 -3.83 6.99 40.82 0.29 -3.55 16 20 C 0.11 2.50 11.27 83.85 0.95 3.44 16 21 N -0.34 -6.82 3.69 -347.10 -1.28 -8.10 16 22 C 0.15 1.43 6.82 86.38 0.59 2.02 16 23 C -0.19 -2.33 5.93 -10.79 -0.06 -2.40 16 24 C -0.18 -1.86 10.18 30.59 0.31 -1.55 16 25 C -0.15 -1.07 10.25 30.60 0.31 -0.76 16 26 N -0.08 -2.31 13.48 37.02 0.50 -1.81 16 27 N -0.23 -7.18 12.04 -50.00 -0.60 -7.78 16 28 C 0.20 10.12 4.25 86.49 0.37 10.48 16 29 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 31 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.66 7.36 -2.39 -0.02 1.65 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.29 7.48 -2.39 -0.02 2.27 16 37 H 0.08 2.33 7.94 -2.39 -0.02 2.31 16 38 H 0.41 13.90 8.23 -92.71 -0.76 13.13 16 39 H 0.24 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.14 0.45 7.82 -2.39 -0.02 0.43 16 42 H 0.09 1.68 7.94 -2.39 -0.02 1.66 16 43 H 0.11 0.82 8.03 -2.38 -0.02 0.81 16 44 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 47 H -0.02 -1.21 8.03 -2.39 -0.02 -1.23 16 48 H 0.04 2.56 6.31 -2.39 -0.02 2.55 16 Total: -1.00 -77.52 389.74 2.90 -74.62 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.20 Total: 21.65 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 5.69 Total: 16.44 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -4.96 Total: -136.21 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.07 Total: -24.84 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -77.52 2.90 -74.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034461865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.174 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds