Wall clock time and date at job start Tue Mar 31 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99643 * 2 1 4 4 H 1.48503 * 109.47051 * 180.27607 * 3 2 1 5 5 H 1.48505 * 109.47026 * 300.27320 * 3 2 1 6 6 H 1.48493 * 109.47511 * 60.27312 * 3 2 1 7 7 C 1.38814 * 120.00059 * 180.27226 * 2 1 3 8 8 H 1.07999 * 119.99881 * 196.35960 * 7 2 1 9 9 N 1.36935 * 120.00101 * 16.36272 * 7 2 1 10 10 C 1.47610 * 118.64539 * 27.10483 * 9 7 2 11 11 C 1.54295 * 111.94379 * 137.77889 * 10 9 7 12 12 C 1.50882 * 110.23444 * 319.70167 * 11 10 9 13 13 C 1.52570 * 109.35660 * 91.79639 * 12 11 10 14 14 C 1.47084 * 114.32884 * 274.98847 * 13 12 11 15 15 H 1.09004 * 109.18718 * 302.62941 * 14 13 12 16 16 N 1.46498 * 109.33003 * 183.06287 * 14 13 12 17 17 C 1.34776 * 120.00324 * 154.12969 * 16 14 13 18 18 O 1.21280 * 119.99816 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00465 * 180.02562 * 17 16 14 20 20 H 1.08999 * 109.45945 * 60.00087 * 19 17 16 21 21 C 1.53107 * 109.46321 * 179.97438 * 19 17 16 22 22 C 1.53424 * 109.57737 * 190.10786 * 21 19 17 23 23 C 1.50603 * 108.32426 * 310.16005 * 22 21 19 24 24 N 1.32907 * 129.15985 * 196.62573 * 23 22 21 25 25 N 1.29019 * 108.63110 * 179.77571 * 24 23 22 26 26 N 1.29105 * 110.25985 * 0.02562 * 25 24 23 27 27 H 0.97005 * 126.00186 * 180.10502 * 26 25 24 28 28 C 1.34390 * 107.98878 * 0.06964 * 26 25 24 29 29 C 1.50530 * 129.25653 * 179.85163 * 28 26 25 30 30 C 1.44575 * 118.64429 * 207.37477 * 9 7 2 31 31 H 0.96991 * 120.00296 * 359.72681 * 1 2 3 32 32 H 1.08995 * 108.94778 * 258.58432 * 10 9 7 33 33 H 1.08999 * 108.94291 * 17.20407 * 10 9 7 34 34 H 1.08998 * 109.36647 * 199.42456 * 11 10 9 35 35 H 1.08996 * 109.11798 * 79.82751 * 11 10 9 36 36 H 1.09001 * 109.49154 * 331.83234 * 12 11 10 37 37 H 1.08999 * 109.51103 * 211.77753 * 12 11 10 38 38 H 1.09003 * 108.51076 * 153.73123 * 13 12 11 39 39 H 1.09008 * 108.51123 * 36.24761 * 13 12 11 40 40 H 0.97006 * 120.00135 * 334.12938 * 16 14 13 41 41 H 1.09003 * 109.44965 * 310.12716 * 21 19 17 42 42 H 1.09003 * 109.45129 * 70.05663 * 21 19 17 43 43 H 1.09005 * 109.68488 * 190.45950 * 22 21 19 44 44 H 1.08991 * 109.70474 * 69.87102 * 22 21 19 45 45 H 1.08993 * 109.69789 * 76.71978 * 29 28 26 46 46 H 1.09002 * 109.72631 * 316.15001 * 29 28 26 47 47 H 1.08997 * 109.44885 * 30.74803 * 30 9 7 48 48 H 1.09003 * 109.45007 * 150.66392 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0067 5 1 1.8863 2.3993 -1.2092 6 1 1.8964 2.3936 1.2157 7 6 2.0103 -1.2021 -0.0057 8 1 3.0575 -1.2223 0.2576 9 7 1.3673 -2.3624 -0.3453 10 6 0.2005 -2.2872 -1.2464 11 6 0.2159 -3.4099 -2.3046 12 6 1.6186 -3.6243 -2.8176 13 6 2.3036 -4.7013 -1.9818 14 6 2.9290 -4.2037 -0.7470 15 1 3.6547 -3.4305 -0.9995 16 7 3.6130 -5.3085 -0.0706 17 6 4.6549 -5.0568 0.7465 18 8 5.0259 -3.9156 0.9221 19 6 5.3590 -6.1933 1.4419 20 1 5.7670 -6.8773 0.6978 21 6 6.4969 -5.6381 2.3027 22 6 7.3695 -6.7940 2.8091 23 6 6.4680 -7.8390 3.4119 24 7 6.7755 -8.8460 4.2229 25 7 5.6959 -9.4951 4.5018 26 7 4.6845 -8.9573 3.9063 27 1 3.7645 -9.2604 3.9588 28 6 5.1301 -7.9033 3.2015 29 6 4.3608 -6.9444 2.3328 30 6 1.8555 -3.6100 0.1982 31 1 -0.4850 0.8399 0.0040 32 1 -0.7104 -2.3675 -0.6533 33 1 0.2067 -1.3224 -1.7535 34 1 -0.4341 -3.1332 -3.1346 35 1 -0.1484 -4.3321 -1.8520 36 1 2.1800 -2.6931 -2.7416 37 1 1.5806 -3.9419 -3.8596 38 1 3.0719 -5.1763 -2.5918 39 1 1.5632 -5.4556 -1.7151 40 1 3.3161 -6.2213 -0.2107 41 1 7.1054 -4.9587 1.7057 42 1 6.0791 -5.0989 3.1529 43 1 8.0630 -6.4265 3.5656 44 1 7.9269 -7.2252 1.9776 45 1 3.8208 -6.2340 2.9586 46 1 3.6557 -7.4959 1.7108 47 1 2.2948 -3.4312 1.1795 48 1 1.0278 -4.3128 0.2941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034487401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:21 Heat of formation + Delta-G solvation = 66.337617 kcal Electronic energy + Delta-G solvation = -29531.599309 eV Core-core repulsion = 25623.459514 eV Total energy + Delta-G solvation = -3908.139795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.71979 -40.07686 -38.04278 -36.56715 -34.63303 -34.15342 -33.26342 -31.22565 -30.77037 -30.52867 -29.59798 -26.07916 -25.05690 -24.30403 -23.54695 -23.11208 -22.71852 -20.65826 -20.23405 -19.50894 -19.17625 -18.44110 -17.07555 -16.61809 -16.40755 -16.04353 -15.61302 -14.94714 -14.66176 -14.30391 -14.21461 -13.96352 -13.92064 -13.71910 -13.49379 -13.16096 -12.77727 -12.57220 -12.38644 -12.18722 -12.13829 -11.83048 -11.56361 -11.43084 -11.28033 -11.08552 -10.92779 -10.84076 -10.79785 -10.57910 -10.57348 -10.16631 -10.13293 -9.76375 -9.67097 -9.60270 -9.52104 -9.17161 -8.85694 -8.33840 -6.64615 -5.76325 -3.20163 1.24491 2.24765 2.35010 2.84088 3.29995 3.40119 3.48584 3.53654 3.92731 4.22398 4.42494 4.48325 4.55724 4.66610 4.84269 5.01834 5.04274 5.16779 5.19885 5.28293 5.32317 5.41863 5.43998 5.50489 5.54749 5.70968 5.74695 5.85271 5.95256 5.97469 6.00162 6.09645 6.13539 6.26034 6.34782 6.52273 6.56162 6.58180 6.67416 6.70844 6.78822 6.89168 7.07015 7.41372 7.68985 7.73570 7.91633 8.16708 8.46318 8.51177 9.26935 9.91986 10.35894 11.31340 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.002938 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.895602 B = 9527.103607 C =10327.811112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.584 5.584 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.111 4.111 14 C 0.113 3.887 15 H 0.088 0.912 16 N -0.723 5.723 17 C 0.512 3.488 18 O -0.521 6.521 19 C -0.101 4.101 20 H 0.101 0.899 21 C -0.102 4.102 22 C -0.034 4.034 23 C -0.015 4.015 24 N -0.259 5.259 25 N -0.092 5.092 26 N -0.382 5.382 27 H 0.448 0.552 28 C -0.009 4.009 29 C -0.039 4.039 30 C 0.159 3.841 31 H 0.252 0.748 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.390 0.610 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -17.781 -0.061 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.006 3.994 15 H 0.106 0.894 16 N -0.374 5.374 17 C 0.297 3.703 18 O -0.395 6.395 19 C -0.123 4.123 20 H 0.119 0.881 21 C -0.140 4.140 22 C -0.073 4.073 23 C -0.154 4.154 24 N -0.125 5.125 25 N -0.071 5.071 26 N -0.101 5.101 27 H 0.294 0.706 28 C -0.145 4.145 29 C -0.078 4.078 30 C 0.030 3.970 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.223 0.777 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.066 0.934 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.179 -17.911 1.026 19.324 hybrid contribution -0.920 0.844 -0.696 1.429 sum 6.259 -17.067 0.331 18.182 Atomic orbital electron populations 1.70084 1.05232 1.25286 1.54380 1.25029 0.95220 0.98402 1.00669 0.86276 0.79726 0.84034 0.77166 1.20054 1.21648 1.21793 1.19340 0.92906 0.84921 1.41422 0.91235 1.43587 1.33767 1.01557 1.51532 1.21108 0.88777 0.95774 0.89185 1.22126 0.95834 1.00591 0.99670 1.20823 0.97115 0.99423 0.96535 1.20569 0.99283 0.98867 0.96192 1.21277 0.96529 0.88081 0.93477 0.89358 1.46214 1.32986 1.10441 1.47736 1.20260 0.80404 0.90039 0.79643 1.90789 1.64608 1.22314 1.61838 1.21362 0.96364 0.96550 0.98006 0.88057 1.21492 0.95673 0.96835 1.00026 1.20038 0.95793 0.91416 1.00066 1.21814 0.92856 0.99263 1.01515 1.74828 1.18667 1.05671 1.13308 1.78571 0.89560 1.20674 1.18282 1.44695 1.12145 1.20698 1.32583 0.70600 1.21824 0.95989 0.94361 1.02288 1.20153 0.96478 0.95140 0.96059 1.20891 0.93201 0.88419 0.94535 0.93824 0.95689 0.90847 0.92937 0.93751 0.90436 0.93423 0.93474 0.92966 0.77728 0.89134 0.90487 0.89233 0.89702 0.88491 0.89331 0.93406 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.92 11.10 55.49 0.62 -25.30 16 2 C 0.01 0.14 4.84 -17.43 -0.08 0.06 16 3 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.26 -6.96 9.43 -15.06 -0.14 -7.10 16 8 H 0.07 1.96 7.88 -52.49 -0.41 1.55 16 9 N -0.58 -13.92 2.26 -171.88 -0.39 -14.31 16 10 C 0.18 4.02 4.71 -2.76 -0.01 4.00 16 11 C -0.14 -2.49 5.71 -27.12 -0.15 -2.65 16 12 C -0.10 -1.62 5.51 -28.01 -0.15 -1.77 16 13 C -0.11 -1.57 4.55 -29.79 -0.14 -1.70 16 14 C 0.11 1.84 2.34 -69.79 -0.16 1.67 16 15 H 0.09 1.78 7.56 -51.93 -0.39 1.39 16 16 N -0.72 -8.78 4.96 -55.63 -0.28 -9.05 16 17 C 0.51 6.74 7.10 -10.99 -0.08 6.66 16 18 O -0.52 -9.61 15.46 5.56 0.09 -9.52 16 19 C -0.10 -0.89 2.50 -91.49 -0.23 -1.12 16 20 H 0.10 0.72 8.12 -51.93 -0.42 0.30 16 21 C -0.10 -0.97 4.64 -26.46 -0.12 -1.10 16 22 C -0.03 -0.29 6.30 -27.71 -0.17 -0.47 16 23 C -0.01 -0.16 7.11 -83.12 -0.59 -0.75 16 24 N -0.26 -3.31 12.40 33.17 0.41 -2.90 16 25 N -0.09 -1.06 13.40 60.35 0.81 -0.26 16 26 N -0.38 -3.08 6.97 33.39 0.23 -2.85 16 27 H 0.45 1.83 8.96 -190.07 -1.70 0.13 16 28 C -0.01 -0.08 7.15 -82.50 -0.59 -0.67 16 29 C -0.04 -0.28 5.43 -27.74 -0.15 -0.43 16 30 C 0.16 3.17 5.24 -4.09 -0.02 3.15 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.07 1.88 6.40 -51.93 -0.33 1.55 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 36 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.66 7.36 -51.92 -0.38 0.28 16 40 H 0.39 3.30 8.25 -40.82 -0.34 2.96 16 41 H 0.09 0.93 7.76 -51.93 -0.40 0.53 16 42 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.09 0.42 7.90 -51.93 -0.41 0.01 16 47 H 0.05 1.05 7.98 -51.93 -0.41 0.64 16 48 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -34.10 374.32 -9.61 -43.71 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.91 Total: 0.11 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.80 Total: -2.22 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 1.40 Total: -54.67 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.10 -9.61 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034487401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.047 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds