Wall clock time and date at job start Tue Mar 31 2020 18:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99643 * 2 1 4 4 H 1.48503 * 109.47051 * 180.27607 * 3 2 1 5 5 H 1.48505 * 109.47026 * 300.27320 * 3 2 1 6 6 H 1.48493 * 109.47511 * 60.27312 * 3 2 1 7 7 C 1.38814 * 120.00059 * 180.27226 * 2 1 3 8 8 H 1.07999 * 119.99881 * 196.35960 * 7 2 1 9 9 N 1.36935 * 120.00101 * 16.36272 * 7 2 1 10 10 C 1.47610 * 118.64539 * 27.10483 * 9 7 2 11 11 C 1.54295 * 111.94379 * 137.77889 * 10 9 7 12 12 C 1.50882 * 110.23444 * 319.70167 * 11 10 9 13 13 C 1.52570 * 109.35660 * 91.79639 * 12 11 10 14 14 C 1.47084 * 114.32884 * 274.98847 * 13 12 11 15 15 H 1.09004 * 109.18718 * 302.62941 * 14 13 12 16 16 N 1.46498 * 109.33003 * 183.06287 * 14 13 12 17 17 C 1.34776 * 120.00324 * 154.12969 * 16 14 13 18 18 O 1.21280 * 119.99816 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00465 * 180.02562 * 17 16 14 20 20 H 1.08999 * 109.45945 * 60.00087 * 19 17 16 21 21 C 1.53107 * 109.46321 * 179.97438 * 19 17 16 22 22 C 1.53424 * 109.57737 * 190.10786 * 21 19 17 23 23 C 1.50603 * 108.32426 * 310.16005 * 22 21 19 24 24 N 1.32907 * 129.15985 * 196.62573 * 23 22 21 25 25 N 1.29019 * 108.63110 * 179.77571 * 24 23 22 26 26 N 1.29105 * 110.25985 * 0.02562 * 25 24 23 27 27 H 0.97005 * 126.00186 * 180.10502 * 26 25 24 28 28 C 1.34390 * 107.98878 * 0.06964 * 26 25 24 29 29 C 1.50530 * 129.25653 * 179.85163 * 28 26 25 30 30 C 1.44575 * 118.64429 * 207.37477 * 9 7 2 31 31 H 0.96991 * 120.00296 * 359.72681 * 1 2 3 32 32 H 1.08995 * 108.94778 * 258.58432 * 10 9 7 33 33 H 1.08999 * 108.94291 * 17.20407 * 10 9 7 34 34 H 1.08998 * 109.36647 * 199.42456 * 11 10 9 35 35 H 1.08996 * 109.11798 * 79.82751 * 11 10 9 36 36 H 1.09001 * 109.49154 * 331.83234 * 12 11 10 37 37 H 1.08999 * 109.51103 * 211.77753 * 12 11 10 38 38 H 1.09003 * 108.51076 * 153.73123 * 13 12 11 39 39 H 1.09008 * 108.51123 * 36.24761 * 13 12 11 40 40 H 0.97006 * 120.00135 * 334.12938 * 16 14 13 41 41 H 1.09003 * 109.44965 * 310.12716 * 21 19 17 42 42 H 1.09003 * 109.45129 * 70.05663 * 21 19 17 43 43 H 1.09005 * 109.68488 * 190.45950 * 22 21 19 44 44 H 1.08991 * 109.70474 * 69.87102 * 22 21 19 45 45 H 1.08993 * 109.69789 * 76.71978 * 29 28 26 46 46 H 1.09002 * 109.72631 * 316.15001 * 29 28 26 47 47 H 1.08997 * 109.44885 * 30.74803 * 30 9 7 48 48 H 1.09003 * 109.45007 * 150.66392 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0067 5 1 1.8863 2.3993 -1.2092 6 1 1.8964 2.3936 1.2157 7 6 2.0103 -1.2021 -0.0057 8 1 3.0575 -1.2223 0.2576 9 7 1.3673 -2.3624 -0.3453 10 6 0.2005 -2.2872 -1.2464 11 6 0.2159 -3.4099 -2.3046 12 6 1.6186 -3.6243 -2.8176 13 6 2.3036 -4.7013 -1.9818 14 6 2.9290 -4.2037 -0.7470 15 1 3.6547 -3.4305 -0.9995 16 7 3.6130 -5.3085 -0.0706 17 6 4.6549 -5.0568 0.7465 18 8 5.0259 -3.9156 0.9221 19 6 5.3590 -6.1933 1.4419 20 1 5.7670 -6.8773 0.6978 21 6 6.4969 -5.6381 2.3027 22 6 7.3695 -6.7940 2.8091 23 6 6.4680 -7.8390 3.4119 24 7 6.7755 -8.8460 4.2229 25 7 5.6959 -9.4951 4.5018 26 7 4.6845 -8.9573 3.9063 27 1 3.7645 -9.2604 3.9588 28 6 5.1301 -7.9033 3.2015 29 6 4.3608 -6.9444 2.3328 30 6 1.8555 -3.6100 0.1982 31 1 -0.4850 0.8399 0.0040 32 1 -0.7104 -2.3675 -0.6533 33 1 0.2067 -1.3224 -1.7535 34 1 -0.4341 -3.1332 -3.1346 35 1 -0.1484 -4.3321 -1.8520 36 1 2.1800 -2.6931 -2.7416 37 1 1.5806 -3.9419 -3.8596 38 1 3.0719 -5.1763 -2.5918 39 1 1.5632 -5.4556 -1.7151 40 1 3.3161 -6.2213 -0.2107 41 1 7.1054 -4.9587 1.7057 42 1 6.0791 -5.0989 3.1529 43 1 8.0630 -6.4265 3.5656 44 1 7.9269 -7.2252 1.9776 45 1 3.8208 -6.2340 2.9586 46 1 3.6557 -7.4959 1.7108 47 1 2.2948 -3.4312 1.1795 48 1 1.0278 -4.3128 0.2941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034487401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:20 Heat of formation + Delta-G solvation = 41.960054 kcal Electronic energy + Delta-G solvation = -29532.656400 eV Core-core repulsion = 25623.459514 eV Total energy + Delta-G solvation = -3909.196885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.46849 -41.20458 -39.40472 -37.52430 -36.16598 -34.96949 -34.72465 -32.87167 -32.12693 -31.27537 -30.68572 -27.87315 -26.16376 -25.56393 -24.87746 -24.01062 -23.75758 -21.68407 -21.54811 -20.87974 -20.29872 -19.16861 -18.56710 -18.02510 -17.41628 -17.21331 -16.64138 -16.43339 -16.24515 -15.55410 -15.28230 -15.04303 -14.98169 -14.73777 -14.63451 -14.37729 -14.21824 -14.04027 -13.76976 -13.16746 -13.07545 -13.02538 -12.98528 -12.81576 -12.61458 -12.41455 -12.30157 -12.18677 -12.05219 -12.01008 -11.61050 -11.57753 -11.42320 -11.34333 -11.30019 -11.10665 -10.70849 -10.48960 -10.04058 -9.90516 -8.60345 -7.86867 -5.32237 0.53043 1.40837 1.43883 1.45069 1.54918 1.62703 1.91812 2.24601 2.52322 3.21564 3.26352 3.48708 3.70017 3.74771 3.81468 3.95942 3.96714 4.02850 4.17573 4.24919 4.34233 4.39027 4.46387 4.50349 4.56855 4.59848 4.77346 4.80919 4.82135 4.88770 4.99732 5.03725 5.09632 5.13615 5.18440 5.23492 5.28403 5.33726 5.37215 5.40403 5.49165 5.66173 5.72784 5.75642 5.84452 5.98906 6.42422 6.73979 7.20019 7.39619 7.46665 7.97389 8.31677 9.17214 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.002938 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.895602 B = 9527.103607 C =10327.811112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.257 4.257 8 H 0.049 0.951 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.108 4.108 14 C 0.134 3.866 15 H 0.043 0.957 16 N -0.706 5.706 17 C 0.512 3.488 18 O -0.580 6.580 19 C -0.087 4.087 20 H 0.134 0.866 21 C -0.099 4.099 22 C -0.026 4.026 23 C -0.031 4.031 24 N -0.293 5.293 25 N -0.116 5.116 26 N -0.362 5.362 27 H 0.466 0.534 28 C 0.004 3.996 29 C -0.033 4.033 30 C 0.159 3.841 31 H 0.249 0.751 32 H -0.005 1.005 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.416 0.584 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.016 0.984 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -20.817 -1.583 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.388 4.388 8 H 0.067 0.933 9 N -0.319 5.319 10 C 0.059 3.941 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.146 4.146 14 C 0.026 3.974 15 H 0.061 0.939 16 N -0.358 5.358 17 C 0.299 3.701 18 O -0.459 6.459 19 C -0.109 4.109 20 H 0.151 0.849 21 C -0.138 4.138 22 C -0.065 4.065 23 C -0.172 4.172 24 N -0.159 5.159 25 N -0.095 5.095 26 N -0.084 5.084 27 H 0.315 0.685 28 C -0.133 4.133 29 C -0.072 4.072 30 C 0.031 3.969 31 H 0.058 0.942 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.253 0.747 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.146 0.854 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.917 -21.047 -0.493 22.160 hybrid contribution -0.849 1.788 -0.174 1.987 sum 6.068 -19.259 -0.667 20.203 Atomic orbital electron populations 1.70205 1.06168 1.25521 1.55797 1.25621 0.95968 1.00921 1.01353 0.85413 0.78474 0.80822 0.77046 1.20153 1.21131 1.21813 1.19363 0.92205 0.86701 1.40564 0.93290 1.43729 1.33864 1.01970 1.52368 1.20915 0.87054 0.96429 0.89654 1.21981 0.97468 0.99079 0.98302 1.20809 0.95575 0.98474 0.98906 1.20509 1.00617 0.98678 0.94801 1.20653 0.94393 0.88468 0.93893 0.93854 1.45933 1.32275 1.10709 1.46881 1.20999 0.79988 0.90233 0.78865 1.90782 1.66261 1.25188 1.63670 1.21298 0.95927 0.95229 0.98474 0.84851 1.21414 0.96046 0.96974 0.99327 1.20002 0.95402 0.90571 1.00544 1.22148 0.94095 0.99311 1.01657 1.74792 1.19665 1.06857 1.14560 1.78504 0.90124 1.21457 1.19404 1.44689 1.12567 1.19911 1.31259 0.68499 1.21906 0.95413 0.94167 1.01813 1.20191 0.96264 0.94793 0.95984 1.21010 0.94580 0.87451 0.93882 0.94185 0.98665 0.94681 0.91399 0.91366 0.94434 0.90100 0.90604 0.89935 0.74685 0.90183 0.92426 0.89328 0.87976 0.89186 0.85405 0.96558 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 11.10 21.65 0.24 -55.02 16 2 C -0.04 -2.47 4.84 84.86 0.41 -2.06 16 3 Si 0.95 46.82 29.58 68.60 2.03 48.85 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.26 -14.63 9.43 84.03 0.79 -13.84 16 8 H 0.05 2.94 7.88 -2.91 -0.02 2.91 16 9 N -0.60 -29.27 2.26 -697.69 -1.58 -30.84 16 10 C 0.18 8.54 4.71 86.61 0.41 8.95 16 11 C -0.13 -4.21 5.71 30.34 0.17 -4.04 16 12 C -0.10 -2.93 5.51 29.76 0.16 -2.76 16 13 C -0.11 -2.62 4.55 28.61 0.13 -2.49 16 14 C 0.13 4.16 2.34 43.79 0.10 4.26 16 15 H 0.04 1.78 7.56 -2.38 -0.02 1.76 16 16 N -0.71 -15.06 4.96 -448.30 -2.22 -17.28 16 17 C 0.51 12.74 7.10 87.66 0.62 13.36 16 18 O -0.58 -21.96 15.46 -3.03 -0.05 -22.01 16 19 C -0.09 -1.32 2.50 -11.36 -0.03 -1.35 16 20 H 0.13 1.27 8.12 -2.39 -0.02 1.25 16 21 C -0.10 -1.82 4.64 30.77 0.14 -1.67 16 22 C -0.03 -0.42 6.30 29.96 0.19 -0.23 16 23 C -0.03 -0.61 7.11 41.75 0.30 -0.32 16 24 N -0.29 -7.22 12.40 -48.99 -0.61 -7.83 16 25 N -0.12 -2.53 13.40 37.02 0.50 -2.03 16 26 N -0.36 -4.92 6.97 -48.28 -0.34 -5.26 16 27 H 0.47 2.37 8.96 -219.68 -1.97 0.40 16 28 C 0.00 0.06 7.15 41.50 0.30 0.35 16 29 C -0.03 -0.36 5.43 29.94 0.16 -0.20 16 30 C 0.16 6.30 5.24 87.37 0.46 6.75 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 33 H 0.03 1.86 6.40 -2.39 -0.02 1.85 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.92 7.32 -2.39 -0.02 1.90 16 36 H 0.04 1.42 7.49 -2.39 -0.02 1.40 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.58 7.36 -2.38 -0.02 1.56 16 40 H 0.42 4.82 8.25 -92.70 -0.76 4.06 16 41 H 0.08 1.65 7.76 -2.39 -0.02 1.63 16 42 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 43 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.22 8.11 -2.39 -0.02 1.20 16 46 H 0.13 0.46 7.90 -2.39 -0.02 0.45 16 47 H 0.02 0.73 7.98 -2.39 -0.02 0.71 16 48 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -81.12 374.32 0.55 -80.56 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -1.74 Total: 6.14 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.32 Total: 4.73 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -4.01 Total: -118.27 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -81.12 0.55 -80.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034487401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.522 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds