Wall clock time and date at job start Tue Mar 31 2020 18:03:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86796 * 120.00218 * 2 1
4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1
5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1
6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1
7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3
8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1
9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1
10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2
11 11 H 1.08991 * 109.47349 * 35.00280 * 10 9 7
12 12 C 1.53002 * 109.46916 * 155.00015 * 10 9 7
13 13 C 1.53000 * 109.47132 * 179.97438 * 12 10 9
14 14 C 1.53001 * 109.47444 * 300.00509 * 13 12 10
15 15 H 1.09000 * 109.46714 * 299.99343 * 14 13 12
16 16 N 1.46499 * 109.47307 * 179.97438 * 14 13 12
17 17 C 1.34779 * 120.00017 * 154.99230 * 16 14 13
18 18 O 1.21277 * 119.99961 * 0.02562 * 17 16 14
19 19 C 1.50700 * 119.99915 * 180.02562 * 17 16 14
20 20 H 1.09006 * 109.68882 * 299.45912 * 19 17 16
21 21 C 1.53429 * 109.69218 * 178.87268 * 19 17 16
22 22 C 1.53107 * 109.55045 * 190.57255 * 21 19 17
23 23 C 1.53420 * 109.58172 * 70.06870 * 22 21 19
24 24 C 1.50603 * 108.33328 * 310.18902 * 23 22 21
25 25 N 1.32910 * 129.16226 * 196.60803 * 24 23 22
26 26 N 1.29017 * 108.63337 * 179.77202 * 25 24 23
27 27 N 1.29110 * 110.26202 * 0.02562 * 26 25 24
28 28 H 0.96992 * 126.00904 * 180.02562 * 27 26 25
29 29 C 1.34402 * 107.98491 * 0.07659 * 27 26 25
30 30 C 1.52996 * 109.47349 * 59.99311 * 14 13 12
31 31 C 1.52999 * 109.47136 * 274.99967 * 10 9 7
32 32 H 0.97005 * 119.99717 * 359.71788 * 1 2 3
33 33 H 0.97001 * 120.00088 * 0.02562 * 9 7 2
34 34 H 1.08997 * 109.47448 * 299.99990 * 12 10 9
35 35 H 1.09000 * 109.47442 * 60.00102 * 12 10 9
36 36 H 1.09005 * 109.47022 * 60.00526 * 13 12 10
37 37 H 1.09001 * 109.47657 * 179.97438 * 13 12 10
38 38 H 0.97002 * 119.99595 * 335.00424 * 16 14 13
39 39 H 1.08999 * 109.45998 * 310.60260 * 21 19 17
40 40 H 1.09005 * 109.45892 * 70.55019 * 21 19 17
41 41 H 1.08997 * 109.45681 * 310.03397 * 22 21 19
42 42 H 1.09001 * 109.45288 * 190.09966 * 22 21 19
43 43 H 1.08995 * 109.69489 * 190.47392 * 23 22 21
44 44 H 1.09003 * 109.72327 * 69.90842 * 23 22 21
45 45 H 1.09006 * 109.46869 * 59.99998 * 30 14 13
46 46 H 1.08997 * 109.47425 * 180.02562 * 30 14 13
47 47 H 1.09000 * 109.47077 * 299.99809 * 31 10 9
48 48 H 1.08993 * 109.47456 * 59.99817 * 31 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 1.2854 2.7464 0.0006
5 1 3.1041 1.6962 1.2125
6 1 3.1040 1.6964 -1.2125
7 6 2.0102 -1.2022 -0.0059
8 1 3.0902 -1.2022 -0.0064
9 7 1.3255 -2.3880 -0.0113
10 6 2.0580 -3.6568 -0.0170
11 1 2.9686 -3.5532 0.5729
12 6 1.1807 -4.7548 0.5878
13 6 1.9454 -6.0800 0.5812
14 6 2.3089 -6.4521 -0.8576
15 1 1.3980 -6.5554 -1.4473
16 7 3.0416 -7.7206 -0.8638
17 6 3.0325 -8.4988 -1.9642
18 8 2.4181 -8.1487 -2.9494
19 6 3.7858 -9.8041 -1.9703
20 1 4.8462 -9.6169 -1.8009
21 6 3.5930 -10.5059 -3.3209
22 6 4.1315 -11.9367 -3.2363
23 6 3.2169 -12.7780 -2.3365
24 6 2.9946 -12.0254 -1.0511
25 7 2.5350 -12.4710 0.1137
26 7 2.5085 -11.4885 0.9495
27 7 2.9325 -10.4083 0.3834
28 1 3.0079 -9.5368 0.8022
29 6 3.2501 -10.7037 -0.8888
30 6 3.1861 -5.3540 -1.4623
31 6 2.4219 -4.0291 -1.4556
32 1 -0.4850 0.8401 0.0041
33 1 0.3555 -2.3880 -0.0113
34 1 0.9215 -4.4895 1.6127
35 1 0.2700 -4.8584 -0.0021
36 1 2.8563 -5.9767 1.1710
37 1 1.3207 -6.8622 1.0125
38 1 3.5332 -8.0006 -0.0758
39 1 2.5318 -10.5314 -3.5687
40 1 4.1332 -9.9598 -4.0943
41 1 5.1379 -11.9217 -2.8181
42 1 4.1600 -12.3734 -4.2345
43 1 3.6911 -13.7360 -2.1239
44 1 2.2617 -12.9435 -2.8350
45 1 4.0970 -5.2507 -0.8726
46 1 3.4447 -5.6189 -2.4875
47 1 1.5111 -4.1327 -2.0455
48 1 3.0467 -3.2469 -1.8865
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034717441.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:03:01
Heat of formation + Delta-G solvation = 45.425360 kcal
Electronic energy + Delta-G solvation = -28942.114679 eV
Core-core repulsion = 25033.068060 eV
Total energy + Delta-G solvation = -3909.046618 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.191 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.95589 -40.47036 -38.40828 -37.08183 -35.15215 -34.38223 -33.09631 -31.27082
-30.56320 -30.54702 -30.45652 -27.54349 -25.19366 -23.86813 -23.46925 -22.99801
-22.53427 -21.40594 -20.93342 -20.04397 -19.62516 -18.63113 -17.58494 -17.03909
-16.66773 -16.43081 -15.88709 -15.22131 -15.02471 -14.48647 -14.36243 -14.27053
-14.14836 -13.89137 -13.79332 -13.57483 -13.07718 -12.75620 -12.63702 -12.16148
-12.06428 -11.94477 -11.84063 -11.73554 -11.55740 -11.51319 -11.18643 -11.09249
-10.87925 -10.85675 -10.80010 -10.74584 -10.29788 -10.22586 -10.17671 -9.88029
-9.65365 -9.31033 -9.24679 -8.90094 -6.99026 -5.79214 -3.08219 1.03474
2.01830 2.11862 2.29891 2.72876 3.41282 3.45861 3.46969 3.75184
3.87935 4.12097 4.25014 4.40065 4.55529 4.64377 4.72659 4.78322
4.81266 4.87670 4.94194 5.09161 5.11896 5.40830 5.42539 5.45458
5.47098 5.55573 5.56567 5.58037 5.58422 5.70244 5.74271 5.79516
5.86036 5.90005 6.05658 6.10242 6.17011 6.30070 6.33574 6.44996
6.52375 6.62465 6.89559 7.04576 7.06977 7.66249 7.78027 8.00832
8.39425 9.50321 10.08238 10.42580 11.43356
Molecular weight = 333.19amu
Principal moments of inertia in cm(-1)
A = 0.027793 B = 0.002226 C = 0.002124
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1007.194548 B =12576.344524 C =13179.814101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.014 4.014
3 Si 0.906 3.094
4 H -0.291 1.291
5 H -0.286 1.286
6 H -0.286 1.286
7 C -0.239 4.239
8 H 0.069 0.931
9 N -0.725 5.725
10 C 0.178 3.822
11 H 0.046 0.954
12 C -0.120 4.120
13 C -0.122 4.122
14 C 0.143 3.857
15 H 0.091 0.909
16 N -0.730 5.730
17 C 0.515 3.485
18 O -0.515 6.515
19 C -0.032 4.032
20 H 0.120 0.880
21 C -0.099 4.099
22 C -0.119 4.119
23 C -0.037 4.037
24 C -0.003 4.003
25 N -0.256 5.256
26 N -0.078 5.078
27 N -0.380 5.380
28 H 0.444 0.556
29 C -0.013 4.013
30 C -0.123 4.123
31 C -0.133 4.133
32 H 0.256 0.744
33 H 0.384 0.616
34 H 0.069 0.931
35 H 0.062 0.938
36 H 0.067 0.933
37 H 0.061 0.939
38 H 0.386 0.614
39 H 0.083 0.917
40 H 0.086 0.914
41 H 0.070 0.930
42 H 0.083 0.917
43 H 0.088 0.912
44 H 0.087 0.913
45 H 0.059 0.941
46 H 0.059 0.941
47 H 0.057 0.943
48 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.332 -25.663 -3.617 27.900
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.210 4.210
3 Si 0.737 3.263
4 H -0.217 1.217
5 H -0.213 1.213
6 H -0.213 1.213
7 C -0.371 4.371
8 H 0.087 0.913
9 N -0.365 5.365
10 C 0.068 3.932
11 H 0.064 0.936
12 C -0.159 4.159
13 C -0.160 4.160
14 C 0.040 3.960
15 H 0.109 0.891
16 N -0.382 5.382
17 C 0.299 3.701
18 O -0.389 6.389
19 C -0.056 4.056
20 H 0.138 0.862
21 C -0.137 4.137
22 C -0.157 4.157
23 C -0.076 4.076
24 C -0.143 4.143
25 N -0.122 5.122
26 N -0.057 5.057
27 N -0.101 5.101
28 H 0.291 0.709
29 C -0.149 4.149
30 C -0.162 4.162
31 C -0.174 4.174
32 H 0.066 0.934
33 H 0.217 0.783
34 H 0.088 0.912
35 H 0.081 0.919
36 H 0.085 0.915
37 H 0.080 0.920
38 H 0.220 0.780
39 H 0.102 0.898
40 H 0.105 0.895
41 H 0.089 0.911
42 H 0.102 0.898
43 H 0.106 0.894
44 H 0.105 0.895
45 H 0.078 0.922
46 H 0.078 0.922
47 H 0.076 0.924
48 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 9.395 -25.996 -3.041 27.809
hybrid contribution 0.877 2.046 -0.101 2.228
sum 10.272 -23.950 -3.142 26.249
Atomic orbital electron populations
1.69653 1.05102 1.25788 1.57567 1.24749 0.95516 0.97698 1.03015
0.86282 0.78537 0.83629 0.77817 1.21689 1.21304 1.21277 1.19178
0.90906 0.84145 1.42834 0.91299 1.42412 1.05790 0.99758 1.88573
1.20223 0.94261 0.86010 0.92730 0.93611 1.21750 0.98956 0.93223
1.01988 1.21792 1.00917 0.98666 0.94641 1.21226 0.95554 0.81381
0.97805 0.89074 1.46362 1.53558 1.22812 1.15478 1.20367 0.81307
0.84992 0.83416 1.90763 1.42023 1.73186 1.32882 1.20097 1.00692
0.90817 0.93974 0.86247 1.21489 1.04026 0.94967 0.93208 1.21681
0.99147 0.94481 1.00436 1.20051 1.01142 0.97820 0.88583 1.21753
1.04162 0.91666 0.96704 1.74877 1.16089 1.21412 0.99837 1.78629
1.17754 0.88429 1.20890 1.44849 1.43595 1.12763 1.08861 0.70915
1.21463 1.08815 0.97288 0.87312 1.21883 0.98529 0.95329 1.00468
1.22231 0.99821 0.94402 1.00930 0.93446 0.78281 0.91196 0.91880
0.91451 0.91988 0.78040 0.89836 0.89524 0.91149 0.89797 0.89390
0.89475 0.92229 0.92232 0.92441 0.91656
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16
4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16
8 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16
9 N -0.73 -17.66 5.12 -53.43 -0.27 -17.93 16
10 C 0.18 3.30 2.77 -67.93 -0.19 3.11 16
11 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16
12 C -0.12 -1.80 5.39 -26.73 -0.14 -1.95 16
13 C -0.12 -1.32 5.39 -26.73 -0.14 -1.46 16
14 C 0.14 1.65 2.45 -67.93 -0.17 1.48 16
15 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16
16 N -0.73 -6.23 4.64 -53.81 -0.25 -6.48 16
17 C 0.51 5.09 7.11 -10.98 -0.08 5.01 16
18 O -0.51 -7.21 15.50 5.56 0.09 -7.12 16
19 C -0.03 -0.22 2.91 -92.78 -0.27 -0.49 16
20 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16
21 C -0.10 -0.63 4.66 -26.45 -0.12 -0.75 16
22 C -0.12 -0.53 5.90 -26.46 -0.16 -0.69 16
23 C -0.04 -0.22 6.30 -27.71 -0.17 -0.40 16
24 C 0.00 -0.03 7.11 -83.12 -0.59 -0.62 16
25 N -0.26 -3.02 12.40 33.17 0.41 -2.61 16
26 N -0.08 -0.87 13.40 60.35 0.81 -0.06 16
27 N -0.38 -3.07 6.76 33.39 0.23 -2.85 16
28 H 0.44 2.36 6.82 -190.08 -1.30 1.06 16
29 C -0.01 -0.11 6.38 -82.50 -0.53 -0.63 16
30 C -0.12 -1.63 5.49 -26.76 -0.15 -1.78 16
31 C -0.13 -2.28 5.50 -26.76 -0.15 -2.42 16
32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
33 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16
34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
38 H 0.39 2.09 6.64 -40.82 -0.27 1.82 16
39 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16
40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
41 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16
42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
LS Contribution 379.31 15.07 5.72 5.72
Total: -1.00 -34.26 379.31 -9.24 -43.50
By element:
Atomic # 1 Polarization: 15.22 SS G_CDS: -8.56 Total: 6.65 kcal
Atomic # 6 Polarization: -5.64 SS G_CDS: -3.10 Total: -8.74 kcal
Atomic # 7 Polarization: -58.81 SS G_CDS: 1.65 Total: -57.16 kcal
Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -34.26 -9.24 -43.50 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034717441.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.928 kcal
(2) G-P(sol) polarization free energy of solvation -34.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.425 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds