Wall clock time and date at job start Tue Mar 31 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47368 * 300.00179 * 3 2 1 6 6 H 1.48499 * 109.47168 * 60.00174 * 3 2 1 7 7 C 1.38810 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99885 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00064 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46857 * 34.99928 * 10 9 7 12 12 C 1.52989 * 109.47235 * 154.99717 * 10 9 7 13 13 C 1.53004 * 109.47431 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46783 * 300.00156 * 13 12 10 15 15 H 1.09003 * 109.47712 * 300.00048 * 14 13 12 16 16 N 1.46498 * 109.47075 * 179.97438 * 14 13 12 17 17 C 1.34775 * 119.99993 * 155.00107 * 16 14 13 18 18 O 1.21280 * 120.00470 * 0.02562 * 17 16 14 19 19 C 1.50707 * 119.99920 * 180.02562 * 17 16 14 20 20 H 1.09002 * 109.68868 * 60.55274 * 19 17 16 21 21 C 1.53462 * 109.69716 * 181.15163 * 19 17 16 22 22 C 1.53112 * 109.53349 * 169.47487 * 21 19 17 23 23 C 1.53420 * 109.55841 * 289.88970 * 22 21 19 24 24 C 1.50593 * 108.33596 * 49.83213 * 23 22 21 25 25 N 1.32908 * 129.16743 * 163.52588 * 24 23 22 26 26 N 1.29016 * 108.64259 * 180.09866 * 25 24 23 27 27 N 1.29116 * 110.25743 * 359.97438 * 26 25 24 28 28 H 0.97001 * 126.00946 * 179.97438 * 27 26 25 29 29 C 1.34401 * 107.98275 * 359.93309 * 27 26 25 30 30 C 1.53002 * 109.47387 * 59.99933 * 14 13 12 31 31 C 1.52998 * 109.46933 * 299.99911 * 30 14 13 32 32 H 0.96995 * 120.00245 * 359.97438 * 1 2 3 33 33 H 0.96994 * 119.99927 * 0.02562 * 9 7 2 34 34 H 1.09009 * 109.47101 * 59.99947 * 12 10 9 35 35 H 1.08998 * 109.47951 * 300.00296 * 12 10 9 36 36 H 1.08996 * 109.47116 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47034 * 59.99946 * 13 12 10 38 38 H 0.97004 * 120.00348 * 335.00119 * 16 14 13 39 39 H 1.08992 * 109.48858 * 49.43821 * 21 19 17 40 40 H 1.08997 * 109.44003 * 289.47516 * 21 19 17 41 41 H 1.09002 * 109.45261 * 169.86890 * 22 21 19 42 42 H 1.09000 * 109.45202 * 49.91269 * 22 21 19 43 43 H 1.09001 * 109.69055 * 169.53941 * 23 22 21 44 44 H 1.08992 * 109.69537 * 290.07885 * 23 22 21 45 45 H 1.09002 * 109.47120 * 59.99358 * 30 14 13 46 46 H 1.09003 * 109.47674 * 180.02562 * 30 14 13 47 47 H 1.08996 * 109.47409 * 299.99458 * 31 30 14 48 48 H 1.09001 * 109.47472 * 179.97438 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6091 13 6 1.9457 -6.0773 0.6085 14 6 2.3090 -6.4558 -0.8287 15 1 1.3981 -6.5617 -1.4179 16 7 3.0418 -7.7244 -0.8292 17 6 3.0326 -8.5074 -1.9262 18 8 2.4182 -8.1616 -2.9130 19 6 3.7860 -9.8126 -1.9265 20 1 3.3918 -10.4644 -1.1468 21 6 3.6400 -10.4937 -3.2940 22 6 4.6089 -11.6759 -3.3831 23 6 6.0491 -11.1543 -3.4692 24 6 6.2553 -10.1485 -2.3675 25 7 7.3907 -9.6663 -1.8727 26 7 7.1083 -8.8264 -0.9351 27 7 5.8288 -8.7327 -0.7894 28 1 5.3675 -8.1680 -0.1496 29 6 5.2484 -9.5543 -1.6807 30 6 3.1862 -5.3605 -1.4384 31 6 2.4215 -4.0353 -1.4378 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 0.2702 -4.8584 0.0197 35 1 0.9217 -4.4823 1.6328 36 1 1.3206 -6.8577 1.0425 37 1 2.8566 -5.9714 1.1977 38 1 3.5335 -8.0008 -0.0401 39 1 3.8677 -9.7773 -4.0832 40 1 2.6177 -10.8524 -3.4133 41 1 4.3823 -12.2647 -4.2720 42 1 4.5015 -12.3009 -2.4965 43 1 6.7475 -11.9820 -3.3462 44 1 6.2103 -10.6786 -4.4365 45 1 4.0971 -5.2545 -0.8492 46 1 3.4447 -5.6299 -2.4625 47 1 1.5106 -4.1412 -2.0269 48 1 3.0465 -3.2549 -1.8717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034717442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:04 Heat of formation + Delta-G solvation = 45.421444 kcal Electronic energy + Delta-G solvation = -29085.600044 eV Core-core repulsion = 25176.553256 eV Total energy + Delta-G solvation = -3909.046788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.92553 -40.46765 -38.40644 -37.07268 -35.15020 -34.35831 -33.09364 -31.26029 -30.57123 -30.51550 -30.45115 -27.54296 -25.18032 -23.85085 -23.45506 -22.99475 -22.51340 -21.41034 -20.95528 -20.01631 -19.61437 -18.62135 -17.57289 -17.02158 -16.63513 -16.45602 -15.88111 -15.26691 -14.94838 -14.45979 -14.39434 -14.25401 -14.07723 -13.93336 -13.80027 -13.57721 -13.07912 -12.71196 -12.67301 -12.17035 -12.03049 -11.92816 -11.81927 -11.73358 -11.55595 -11.50272 -11.18263 -11.07754 -10.88533 -10.88011 -10.78480 -10.73384 -10.28388 -10.19093 -10.16712 -9.86561 -9.65727 -9.28503 -9.25166 -8.90818 -6.98739 -5.79428 -3.08282 1.06374 2.03321 2.14996 2.32354 2.72329 3.41186 3.47204 3.49122 3.77409 3.88806 4.13418 4.25449 4.41314 4.55962 4.65297 4.72542 4.78862 4.82569 4.88521 4.95571 5.10854 5.12560 5.41472 5.42524 5.45218 5.47533 5.55466 5.57216 5.58707 5.59679 5.70121 5.74419 5.81274 5.86647 5.89937 6.05593 6.10602 6.16551 6.32888 6.33154 6.44696 6.51856 6.62217 6.89606 7.04551 7.06638 7.67864 7.78068 8.04190 8.39300 9.50509 10.08124 10.42498 11.43290 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002396 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.803770 B =11684.882620 C =12249.209891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.144 3.856 15 H 0.093 0.907 16 N -0.730 5.730 17 C 0.515 3.485 18 O -0.515 6.515 19 C -0.032 4.032 20 H 0.119 0.881 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.037 4.037 24 C -0.003 4.003 25 N -0.257 5.257 26 N -0.077 5.077 27 N -0.379 5.379 28 H 0.444 0.556 29 C -0.014 4.014 30 C -0.124 4.124 31 C -0.132 4.132 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.386 0.614 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -27.453 -2.226 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.158 4.158 14 C 0.040 3.960 15 H 0.111 0.889 16 N -0.382 5.382 17 C 0.299 3.701 18 O -0.389 6.389 19 C -0.055 4.055 20 H 0.137 0.863 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.143 4.143 25 N -0.122 5.122 26 N -0.056 5.056 27 N -0.100 5.100 28 H 0.291 0.709 29 C -0.150 4.150 30 C -0.164 4.164 31 C -0.173 4.173 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.220 0.780 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.527 -26.598 -2.514 28.044 hybrid contribution -0.877 1.056 0.608 1.501 sum 7.649 -25.542 -1.906 26.731 Atomic orbital electron populations 1.69668 1.05097 1.25552 1.57788 1.24744 0.95516 0.97700 1.03044 0.86143 0.78801 0.84211 0.77206 1.20575 1.21861 1.21865 1.19275 0.90979 0.84122 1.42527 0.91198 1.42426 1.05791 0.99766 1.88548 1.20229 0.94290 0.86052 0.92687 0.93630 1.21755 0.98961 0.93268 1.01951 1.21771 1.00917 0.98597 0.94545 1.21229 0.95607 0.81225 0.97891 0.88916 1.46363 1.53696 1.22596 1.15567 1.20379 0.81319 0.85061 0.83340 1.90764 1.42640 1.72882 1.32576 1.20092 0.86905 0.95889 1.02643 0.86307 1.21495 1.00931 0.97453 0.93814 1.21681 0.93217 0.97476 1.03344 1.20046 0.97521 0.95481 0.94565 1.21741 0.88095 1.02804 1.01614 1.74877 1.24864 1.07005 1.05500 1.78642 0.93791 1.17049 1.16072 1.44854 1.06889 1.31014 1.27233 0.70914 1.21446 0.96995 0.99396 0.97157 1.21908 0.98488 0.95584 1.00380 1.22233 0.99793 0.94290 1.00986 0.93556 0.78284 0.91848 0.91205 0.91697 0.91635 0.78037 0.89815 0.89572 0.89815 0.91167 0.89401 0.89469 0.92485 0.92376 0.92367 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.70 5.12 -53.43 -0.27 -17.97 16 10 C 0.18 3.31 2.77 -67.93 -0.19 3.12 16 11 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 12 C -0.12 -1.78 5.39 -26.73 -0.14 -1.93 16 13 C -0.12 -1.28 5.39 -26.73 -0.14 -1.43 16 14 C 0.14 1.64 2.45 -67.93 -0.17 1.48 16 15 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 16 N -0.73 -6.22 4.64 -53.80 -0.25 -6.47 16 17 C 0.51 5.08 7.11 -10.98 -0.08 5.00 16 18 O -0.51 -7.21 15.50 5.56 0.09 -7.12 16 19 C -0.03 -0.22 2.91 -92.77 -0.27 -0.48 16 20 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 21 C -0.10 -0.63 4.66 -26.43 -0.12 -0.75 16 22 C -0.12 -0.54 5.90 -26.46 -0.16 -0.69 16 23 C -0.04 -0.23 6.30 -27.72 -0.17 -0.41 16 24 C 0.00 -0.03 7.11 -83.12 -0.59 -0.62 16 25 N -0.26 -3.14 12.40 33.16 0.41 -2.73 16 26 N -0.08 -0.90 13.40 60.35 0.81 -0.09 16 27 N -0.38 -3.25 6.76 33.39 0.23 -3.03 16 28 H 0.44 2.62 6.81 -190.07 -1.30 1.32 16 29 C -0.01 -0.12 6.38 -82.50 -0.53 -0.65 16 30 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 31 C -0.13 -2.30 5.50 -26.73 -0.15 -2.45 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.39 2.09 6.64 -40.82 -0.27 1.82 16 39 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -34.52 379.31 -9.24 -43.76 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.56 Total: 6.72 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.10 Total: -8.82 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 1.65 Total: -57.58 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.52 -9.24 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034717442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.177 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds