Wall clock time and date at job start Tue Mar 31 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47368 * 300.00179 * 3 2 1 6 6 H 1.48499 * 109.47168 * 60.00174 * 3 2 1 7 7 C 1.38810 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99885 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00064 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46857 * 34.99928 * 10 9 7 12 12 C 1.52989 * 109.47235 * 154.99717 * 10 9 7 13 13 C 1.53004 * 109.47431 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46783 * 300.00156 * 13 12 10 15 15 H 1.09003 * 109.47712 * 300.00048 * 14 13 12 16 16 N 1.46498 * 109.47075 * 179.97438 * 14 13 12 17 17 C 1.34775 * 119.99993 * 155.00107 * 16 14 13 18 18 O 1.21280 * 120.00470 * 0.02562 * 17 16 14 19 19 C 1.50707 * 119.99920 * 180.02562 * 17 16 14 20 20 H 1.09002 * 109.68868 * 60.55274 * 19 17 16 21 21 C 1.53462 * 109.69716 * 181.15163 * 19 17 16 22 22 C 1.53112 * 109.53349 * 169.47487 * 21 19 17 23 23 C 1.53420 * 109.55841 * 289.88970 * 22 21 19 24 24 C 1.50593 * 108.33596 * 49.83213 * 23 22 21 25 25 N 1.32908 * 129.16743 * 163.52588 * 24 23 22 26 26 N 1.29016 * 108.64259 * 180.09866 * 25 24 23 27 27 N 1.29116 * 110.25743 * 359.97438 * 26 25 24 28 28 H 0.97001 * 126.00946 * 179.97438 * 27 26 25 29 29 C 1.34401 * 107.98275 * 359.93309 * 27 26 25 30 30 C 1.53002 * 109.47387 * 59.99933 * 14 13 12 31 31 C 1.52998 * 109.46933 * 299.99911 * 30 14 13 32 32 H 0.96995 * 120.00245 * 359.97438 * 1 2 3 33 33 H 0.96994 * 119.99927 * 0.02562 * 9 7 2 34 34 H 1.09009 * 109.47101 * 59.99947 * 12 10 9 35 35 H 1.08998 * 109.47951 * 300.00296 * 12 10 9 36 36 H 1.08996 * 109.47116 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47034 * 59.99946 * 13 12 10 38 38 H 0.97004 * 120.00348 * 335.00119 * 16 14 13 39 39 H 1.08992 * 109.48858 * 49.43821 * 21 19 17 40 40 H 1.08997 * 109.44003 * 289.47516 * 21 19 17 41 41 H 1.09002 * 109.45261 * 169.86890 * 22 21 19 42 42 H 1.09000 * 109.45202 * 49.91269 * 22 21 19 43 43 H 1.09001 * 109.69055 * 169.53941 * 23 22 21 44 44 H 1.08992 * 109.69537 * 290.07885 * 23 22 21 45 45 H 1.09002 * 109.47120 * 59.99358 * 30 14 13 46 46 H 1.09003 * 109.47674 * 180.02562 * 30 14 13 47 47 H 1.08996 * 109.47409 * 299.99458 * 31 30 14 48 48 H 1.09001 * 109.47472 * 179.97438 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6091 13 6 1.9457 -6.0773 0.6085 14 6 2.3090 -6.4558 -0.8287 15 1 1.3981 -6.5617 -1.4179 16 7 3.0418 -7.7244 -0.8292 17 6 3.0326 -8.5074 -1.9262 18 8 2.4182 -8.1616 -2.9130 19 6 3.7860 -9.8126 -1.9265 20 1 3.3918 -10.4644 -1.1468 21 6 3.6400 -10.4937 -3.2940 22 6 4.6089 -11.6759 -3.3831 23 6 6.0491 -11.1543 -3.4692 24 6 6.2553 -10.1485 -2.3675 25 7 7.3907 -9.6663 -1.8727 26 7 7.1083 -8.8264 -0.9351 27 7 5.8288 -8.7327 -0.7894 28 1 5.3675 -8.1680 -0.1496 29 6 5.2484 -9.5543 -1.6807 30 6 3.1862 -5.3605 -1.4384 31 6 2.4215 -4.0353 -1.4378 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 0.2702 -4.8584 0.0197 35 1 0.9217 -4.4823 1.6328 36 1 1.3206 -6.8577 1.0425 37 1 2.8566 -5.9714 1.1977 38 1 3.5335 -8.0008 -0.0401 39 1 3.8677 -9.7773 -4.0832 40 1 2.6177 -10.8524 -3.4133 41 1 4.3823 -12.2647 -4.2720 42 1 4.5015 -12.3009 -2.4965 43 1 6.7475 -11.9820 -3.3462 44 1 6.2103 -10.6786 -4.4365 45 1 4.0971 -5.2545 -0.8492 46 1 3.4447 -5.6299 -2.4625 47 1 1.5106 -4.1412 -2.0269 48 1 3.0465 -3.2549 -1.8717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034717442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:04 Heat of formation + Delta-G solvation = 20.514393 kcal Electronic energy + Delta-G solvation = -29086.680095 eV Core-core repulsion = 25176.553256 eV Total energy + Delta-G solvation = -3910.126839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.63776 -41.33263 -39.53574 -37.73993 -36.45488 -35.29594 -34.50830 -32.58085 -31.74876 -31.49660 -31.16553 -28.97686 -26.07536 -25.33540 -24.33306 -23.77830 -23.60146 -22.51879 -21.89740 -20.97255 -20.53526 -19.41671 -19.07065 -18.18704 -17.46150 -17.33677 -16.86561 -16.61206 -15.96339 -15.54990 -15.40450 -15.20395 -15.04741 -14.94913 -14.88077 -14.65531 -14.30663 -14.05676 -13.50521 -13.24463 -13.17035 -13.13933 -12.88998 -12.70063 -12.51414 -12.41753 -12.37535 -12.22814 -12.14377 -12.07819 -12.00986 -11.72763 -11.62905 -11.52650 -11.38324 -11.25344 -11.01382 -10.86657 -10.20768 -9.97677 -9.01921 -7.96421 -5.24291 0.36664 1.28952 1.43681 1.44454 1.45271 1.54739 1.64892 1.96147 2.53890 3.17033 3.27415 3.36599 3.51805 3.66816 3.73069 3.82493 3.84932 3.91670 4.17268 4.23244 4.28230 4.30776 4.33064 4.35036 4.44304 4.48463 4.54278 4.58266 4.59799 4.79408 4.95348 4.97603 4.99464 5.05413 5.06925 5.12158 5.19451 5.20784 5.23150 5.32469 5.35104 5.46178 5.47829 5.52359 5.59800 5.74200 6.26930 6.31990 7.04122 7.29849 7.32426 8.10193 8.31844 9.27350 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002396 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.803770 B =11684.882620 C =12249.209891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.073 0.927 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.046 0.954 12 C -0.114 4.114 13 C -0.107 4.107 14 C 0.153 3.847 15 H 0.073 0.927 16 N -0.716 5.716 17 C 0.514 3.486 18 O -0.559 6.559 19 C -0.021 4.021 20 H 0.159 0.841 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.040 4.040 24 C -0.014 4.014 25 N -0.291 5.291 26 N -0.108 5.108 27 N -0.368 5.368 28 H 0.455 0.545 29 C -0.007 4.007 30 C -0.113 4.113 31 C -0.123 4.123 32 H 0.250 0.750 33 H 0.372 0.628 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.406 0.594 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.041 0.959 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -30.109 -1.175 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.091 0.909 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.064 0.936 12 C -0.152 4.152 13 C -0.145 4.145 14 C 0.049 3.951 15 H 0.091 0.909 16 N -0.368 5.368 17 C 0.300 3.700 18 O -0.436 6.436 19 C -0.044 4.044 20 H 0.176 0.824 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.079 4.079 24 C -0.154 4.154 25 N -0.156 5.156 26 N -0.086 5.086 27 N -0.090 5.090 28 H 0.304 0.696 29 C -0.143 4.143 30 C -0.153 4.153 31 C -0.164 4.164 32 H 0.059 0.941 33 H 0.203 0.797 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.243 0.757 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.306 -29.298 -1.422 30.773 hybrid contribution -1.094 1.841 0.227 2.153 sum 8.212 -27.457 -1.194 28.684 Atomic orbital electron populations 1.69815 1.06519 1.25865 1.59887 1.25522 0.96362 1.00965 1.04133 0.85144 0.78245 0.80205 0.76636 1.19178 1.22354 1.21892 1.19628 0.91294 0.85362 1.40401 0.90886 1.42672 1.05472 1.01127 1.88549 1.20497 0.94570 0.85139 0.93388 0.93586 1.21638 0.98417 0.94091 1.01099 1.21687 1.01910 0.96774 0.94177 1.20891 0.94519 0.81685 0.98010 0.90889 1.46107 1.53232 1.21227 1.16282 1.20923 0.80690 0.85780 0.82632 1.90761 1.44639 1.73941 1.34224 1.20197 0.85246 0.94600 1.04329 0.82353 1.21527 1.02074 0.97572 0.92655 1.21661 0.91102 0.96789 1.05092 1.20218 0.99174 0.95118 0.93389 1.22318 0.87624 1.03329 1.02152 1.74840 1.26477 1.07916 1.06349 1.78581 0.95109 1.17989 1.16932 1.44846 1.06266 1.30725 1.27149 0.69645 1.21674 0.97503 0.98692 0.96463 1.21771 0.98960 0.94259 1.00281 1.22024 0.98993 0.95741 0.99630 0.94100 0.79660 0.92689 0.91370 0.88665 0.89345 0.75704 0.92301 0.88568 0.87943 0.89519 0.88408 0.89709 0.90909 0.93715 0.94049 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.23 -13.01 9.93 84.03 0.83 -12.18 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -36.78 5.12 -322.94 -1.65 -38.43 16 10 C 0.17 6.39 2.77 44.99 0.12 6.52 16 11 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 12 C -0.11 -3.22 5.39 30.59 0.16 -3.05 16 13 C -0.11 -1.93 5.39 30.59 0.16 -1.77 16 14 C 0.15 3.19 2.45 44.99 0.11 3.30 16 15 H 0.07 1.89 7.58 -2.39 -0.02 1.87 16 16 N -0.72 -9.99 4.64 -442.53 -2.05 -12.04 16 17 C 0.51 8.94 7.11 87.66 0.62 9.56 16 18 O -0.56 -15.12 15.50 -3.03 -0.05 -15.16 16 19 C -0.02 -0.21 2.91 -12.18 -0.04 -0.25 16 20 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 21 C -0.10 -1.02 4.66 30.79 0.14 -0.88 16 22 C -0.11 -0.63 5.90 30.77 0.18 -0.45 16 23 C -0.04 -0.43 6.30 29.96 0.19 -0.24 16 24 C -0.01 -0.24 7.11 41.75 0.30 0.06 16 25 N -0.29 -6.92 12.40 -48.99 -0.61 -7.53 16 26 N -0.11 -2.42 13.40 37.02 0.50 -1.93 16 27 N -0.37 -5.53 6.76 -48.27 -0.33 -5.86 16 28 H 0.45 4.06 6.81 -219.68 -1.50 2.56 16 29 C -0.01 -0.10 6.38 41.50 0.26 0.17 16 30 C -0.11 -3.01 5.49 30.59 0.17 -2.85 16 31 C -0.12 -4.37 5.50 30.59 0.17 -4.20 16 32 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.37 19.97 7.80 -92.71 -0.72 19.25 16 34 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 2.66 6.64 -92.71 -0.62 2.05 16 39 H 0.06 0.92 7.76 -2.39 -0.02 0.90 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.09 0.28 8.12 -2.39 -0.02 0.26 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.41 379.31 0.15 -78.26 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -1.84 Total: 23.75 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 3.87 Total: -10.28 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -3.86 Total: -125.15 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.05 Total: -15.16 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.41 0.15 -78.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034717442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.776 kcal (2) G-P(sol) polarization free energy of solvation -78.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds