Wall clock time and date at job start Tue Mar 31 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47088 * 5.28789 * 3 2 1 5 5 H 1.48495 * 109.46844 * 125.28667 * 3 2 1 6 6 H 1.48497 * 109.46908 * 245.28684 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 345.64942 * 7 2 1 9 9 N 1.36935 * 119.99964 * 165.65470 * 7 2 1 10 10 C 1.47083 * 125.62931 * 348.94815 * 9 7 2 11 11 C 1.54457 * 107.29725 * 180.96847 * 10 9 7 12 12 C 1.54385 * 102.87109 * 21.50085 * 11 10 9 13 13 C 1.47575 * 125.62495 * 168.63854 * 9 7 2 14 14 C 1.52103 * 110.51270 * 207.36010 * 12 11 10 15 15 C 1.53353 * 109.44168 * 295.90713 * 14 12 11 16 16 N 1.46928 * 108.68597 * 306.70339 * 15 14 12 17 17 C 1.34780 * 120.55004 * 234.32223 * 16 15 14 18 18 O 1.21274 * 120.00308 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99709 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46742 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.47105 * 179.97438 * 20 19 17 22 22 C 1.35305 * 125.86764 * 124.71209 * 21 20 19 23 23 C 1.35350 * 106.17583 * 179.90865 * 22 21 20 24 24 N 1.33768 * 106.49625 * 0.35318 * 23 22 21 25 25 N 1.28632 * 108.88824 * 359.77486 * 24 23 22 26 26 C 1.46928 * 118.89841 * 54.34776 * 16 15 14 27 27 C 1.52110 * 110.50739 * 83.33374 * 12 11 10 28 28 H 0.97002 * 120.00420 * 174.93157 * 1 2 3 29 29 H 1.09003 * 109.87408 * 300.38969 * 10 9 7 30 30 H 1.09002 * 109.87658 * 61.53556 * 10 9 7 31 31 H 1.08995 * 110.73251 * 139.85226 * 11 10 9 32 32 H 1.09004 * 110.72660 * 263.15810 * 11 10 9 33 33 H 1.09003 * 110.37719 * 275.51894 * 13 9 7 34 34 H 1.08995 * 110.38134 * 37.87499 * 13 9 7 35 35 H 1.08994 * 109.47603 * 55.89370 * 14 12 11 36 36 H 1.09001 * 109.48068 * 175.91999 * 14 12 11 37 37 H 1.08992 * 109.59858 * 186.93829 * 15 14 12 38 38 H 1.08995 * 109.59725 * 66.46106 * 15 14 12 39 39 H 1.08997 * 109.47266 * 299.99573 * 19 17 16 40 40 H 1.08993 * 109.47410 * 59.99931 * 19 17 16 41 41 H 1.08991 * 109.47361 * 299.99693 * 20 19 17 42 42 H 1.09004 * 109.47042 * 60.00382 * 20 19 17 43 43 H 1.08006 * 126.91436 * 0.02562 * 22 21 20 44 44 H 1.08001 * 126.75668 * 180.12821 * 23 22 21 45 45 H 1.08999 * 109.60337 * 185.89135 * 26 16 15 46 46 H 1.09002 * 109.73805 * 65.48129 * 26 16 15 47 47 H 1.08999 * 109.47619 * 184.07927 * 27 12 11 48 48 H 1.08999 * 109.47536 * 304.09031 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2903 2.7435 0.1290 5 1 3.1981 1.6420 1.1428 6 1 3.0046 1.7537 -1.2718 7 6 2.0102 -1.2021 -0.0005 8 1 1.4955 -2.1230 0.2309 9 7 3.3476 -1.2205 -0.2944 10 6 4.1193 -0.0961 -0.8451 11 6 5.5723 -0.5850 -1.0337 12 6 5.4140 -2.1196 -1.0913 13 6 4.2536 -2.3698 -0.1047 14 6 6.6835 -2.8048 -0.6091 15 6 7.8369 -2.4726 -1.5636 16 7 7.4250 -2.8065 -2.9338 17 6 8.1765 -3.6271 -3.6943 18 8 7.8274 -3.8957 -4.8243 19 6 9.4506 -4.2110 -3.1405 20 6 10.1061 -5.1007 -4.1988 21 7 11.3450 -5.6679 -3.6607 22 6 11.6523 -6.9840 -3.5971 23 6 12.8819 -7.0575 -3.0363 24 7 13.2584 -5.7997 -2.7803 25 7 12.3259 -5.0000 -3.1619 26 6 6.1806 -2.2304 -3.4615 27 6 5.0368 -2.5641 -2.4962 28 1 -0.4851 -0.8367 -0.0742 29 1 3.7018 0.2046 -1.8060 30 1 4.0979 0.7436 -0.1504 31 1 5.9893 -0.2047 -1.9662 32 1 6.1910 -0.2924 -0.1853 33 1 4.6231 -2.3967 0.9205 34 1 3.7422 -3.3008 -0.3493 35 1 6.9282 -2.4528 0.3930 36 1 6.5287 -3.8836 -0.5879 37 1 8.7155 -3.0580 -1.2929 38 1 8.0691 -1.4096 -1.5003 39 1 10.1325 -3.4047 -2.8703 40 1 9.2233 -4.8063 -2.2562 41 1 9.4242 -5.9070 -4.4686 42 1 10.3335 -4.5057 -5.0834 43 1 11.0404 -7.8098 -3.9291 44 1 13.4465 -7.9552 -2.8319 45 1 5.9675 -2.6561 -4.4420 46 1 6.2830 -1.1486 -3.5469 47 1 4.8588 -3.6394 -2.5017 48 1 4.1320 -2.0443 -2.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035178513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:17 Heat of formation + Delta-G solvation = 102.163744 kcal Electronic energy + Delta-G solvation = -29075.540571 eV Core-core repulsion = 25168.954314 eV Total energy + Delta-G solvation = -3906.586258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.60983 -40.79872 -39.11078 -36.28377 -35.64756 -33.33329 -32.06502 -31.41147 -31.38784 -30.73227 -29.12209 -27.45601 -25.81251 -23.87413 -23.31971 -23.04683 -22.95089 -21.76405 -20.58763 -19.88737 -18.58066 -18.12517 -17.28110 -16.94928 -16.79597 -16.18953 -15.94404 -15.47742 -15.33076 -15.18074 -14.73506 -14.36468 -13.98737 -13.81455 -13.64559 -13.44428 -13.37766 -13.01402 -12.98002 -12.60226 -12.34223 -12.27043 -11.93241 -11.84190 -11.52390 -11.35985 -11.27633 -11.24331 -11.01278 -10.63382 -10.48756 -10.44806 -10.31732 -10.13372 -9.93272 -9.77316 -9.34145 -8.98269 -8.83436 -8.71126 -7.04813 -6.32791 -3.24404 1.20238 1.84366 2.22232 2.24455 2.73828 3.38944 3.46986 3.69282 3.87134 4.04796 4.09079 4.24261 4.53010 4.60059 4.62054 4.65343 4.69706 4.81343 4.83391 4.92107 4.93419 5.05661 5.10507 5.16429 5.20331 5.32171 5.36638 5.46467 5.55084 5.59963 5.67508 5.72900 5.77493 5.82133 5.87889 5.95955 6.13259 6.14218 6.23223 6.26238 6.35862 6.43068 6.57754 6.70048 6.73288 7.09532 7.65184 7.78697 8.13357 8.31545 9.02261 9.53991 10.21242 11.17793 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.002268 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.945704 B =12343.255526 C =12463.516539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.023 4.023 3 Si 1.073 2.927 4 H -0.303 1.303 5 H -0.299 1.299 6 H -0.287 1.287 7 C -0.320 4.320 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.123 4.123 12 C -0.072 4.072 13 C 0.147 3.853 14 C -0.118 4.118 15 C 0.105 3.895 16 N -0.602 5.602 17 C 0.522 3.478 18 O -0.547 6.547 19 C -0.155 4.155 20 C 0.132 3.868 21 N -0.291 5.291 22 C -0.047 4.047 23 C -0.054 4.054 24 N -0.272 5.272 25 N -0.086 5.086 26 C 0.110 3.890 27 C -0.111 4.111 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.191 0.809 44 H 0.190 0.810 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.016 -12.229 -7.100 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.222 4.222 3 Si 0.907 3.093 4 H -0.231 1.231 5 H -0.228 1.228 6 H -0.214 1.214 7 C -0.447 4.447 8 H 0.095 0.905 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.161 4.161 12 C -0.073 4.073 13 C 0.021 3.979 14 C -0.156 4.156 15 C -0.018 4.018 16 N -0.334 5.334 17 C 0.309 3.691 18 O -0.425 6.425 19 C -0.196 4.196 20 C 0.010 3.990 21 N -0.085 5.085 22 C -0.198 4.198 23 C -0.211 4.211 24 N -0.138 5.138 25 N -0.066 5.066 26 C -0.011 4.011 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.208 0.792 44 H 0.207 0.793 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.034 -9.311 -7.280 25.889 hybrid contribution -0.405 -2.790 -0.082 2.820 sum 22.628 -12.101 -7.362 26.696 Atomic orbital electron populations 1.70891 1.05724 1.29229 1.51230 1.25857 0.96506 1.00916 0.98935 0.83799 0.73055 0.76242 0.76191 1.23114 1.22833 1.21440 1.20155 0.81736 0.95956 1.46889 0.90546 1.44855 1.05653 1.08650 1.74750 1.21988 0.90433 0.91784 0.97080 1.22664 0.97517 0.94700 1.01210 1.21112 0.95064 0.95271 0.95889 1.21536 0.89488 0.92012 0.94861 1.21740 0.94103 1.01041 0.98722 1.21899 0.97621 1.01607 0.80671 1.48107 1.23890 1.46825 1.14586 1.20109 0.84731 0.78718 0.85546 1.90723 1.72387 1.60662 1.18752 1.21913 0.96377 1.01497 0.99777 1.21864 0.80579 0.99715 0.96817 1.47575 1.15348 1.05710 1.39853 1.23763 1.00278 0.87744 1.08041 1.23660 0.95519 0.97324 1.04616 1.75136 1.20183 1.00730 1.17773 1.78308 0.93266 1.21511 1.13486 1.21795 0.82540 0.98360 0.98440 1.21640 0.98048 1.01612 0.93622 0.92897 0.93810 0.95626 0.91307 0.91481 0.95899 0.93935 0.90212 0.91501 0.89914 0.90548 0.86934 0.87878 0.86599 0.87196 0.79172 0.79312 0.88968 0.90953 0.91840 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.70 55.49 0.76 -28.33 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 3 Si 1.07 26.67 24.53 -169.99 -4.17 22.50 16 4 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 5 H -0.30 -7.20 6.84 56.52 0.39 -6.82 16 6 H -0.29 -6.47 5.43 56.52 0.31 -6.17 16 7 C -0.32 -9.00 10.56 -15.06 -0.16 -9.16 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 9 N -0.61 -14.33 3.31 -170.17 -0.56 -14.89 16 10 C 0.11 2.31 4.24 -2.96 -0.01 2.30 16 11 C -0.12 -1.83 4.91 -25.24 -0.12 -1.96 16 12 C -0.07 -1.01 0.55 -153.98 -0.08 -1.09 16 13 C 0.15 2.73 6.16 -2.74 -0.02 2.71 16 14 C -0.12 -1.21 4.84 -27.01 -0.13 -1.34 16 15 C 0.10 0.87 6.07 -3.63 -0.02 0.85 16 16 N -0.60 -6.03 2.96 -172.58 -0.51 -6.54 16 17 C 0.52 5.15 7.70 -10.98 -0.08 5.06 16 18 O -0.55 -7.07 15.39 5.56 0.09 -6.98 16 19 C -0.15 -1.04 4.17 -27.88 -0.12 -1.16 16 20 C 0.13 0.84 5.74 -4.04 -0.02 0.81 16 21 N -0.29 -2.29 3.44 -61.26 -0.21 -2.50 16 22 C -0.05 -0.29 11.57 -17.05 -0.20 -0.48 16 23 C -0.05 -0.40 12.05 -17.74 -0.21 -0.62 16 24 N -0.27 -3.04 12.41 30.23 0.38 -2.67 16 25 N -0.09 -0.93 12.91 60.35 0.78 -0.15 16 26 C 0.11 1.29 6.12 -3.63 -0.02 1.27 16 27 C -0.11 -1.52 4.87 -27.01 -0.13 -1.65 16 28 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16 29 H 0.04 0.95 6.78 -51.93 -0.35 0.60 16 30 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 31 H 0.07 0.89 6.18 -51.93 -0.32 0.57 16 32 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 33 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 34 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.51 5.91 -51.93 -0.31 0.20 16 38 H 0.08 0.61 7.62 -51.93 -0.40 0.22 16 39 H 0.11 0.74 7.90 -51.93 -0.41 0.33 16 40 H 0.10 0.60 7.70 -51.93 -0.40 0.20 16 41 H 0.12 0.57 8.03 -51.93 -0.42 0.16 16 42 H 0.11 0.74 8.10 -51.93 -0.42 0.31 16 43 H 0.19 0.43 8.06 -52.48 -0.42 0.00 16 44 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.09 1.15 6.99 -51.93 -0.36 0.79 16 46 H 0.07 0.82 6.56 -51.93 -0.34 0.48 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.09 1.43 7.82 -51.93 -0.41 1.03 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -35.67 367.76 -6.72 -42.39 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.37 Total: -3.16 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.43 Total: -5.22 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.63 Total: -55.07 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.09 Total: -6.98 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.17 Total: 22.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.67 -6.72 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035178513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.559 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds