Wall clock time and date at job start Tue Mar 31 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47088 * 5.28789 * 3 2 1 5 5 H 1.48495 * 109.46844 * 125.28667 * 3 2 1 6 6 H 1.48497 * 109.46908 * 245.28684 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 345.64942 * 7 2 1 9 9 N 1.36935 * 119.99964 * 165.65470 * 7 2 1 10 10 C 1.47083 * 125.62931 * 348.94815 * 9 7 2 11 11 C 1.54457 * 107.29725 * 180.96847 * 10 9 7 12 12 C 1.54385 * 102.87109 * 21.50085 * 11 10 9 13 13 C 1.47575 * 125.62495 * 168.63854 * 9 7 2 14 14 C 1.52103 * 110.51270 * 207.36010 * 12 11 10 15 15 C 1.53353 * 109.44168 * 295.90713 * 14 12 11 16 16 N 1.46928 * 108.68597 * 306.70339 * 15 14 12 17 17 C 1.34780 * 120.55004 * 234.32223 * 16 15 14 18 18 O 1.21274 * 120.00308 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99709 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46742 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.47105 * 179.97438 * 20 19 17 22 22 C 1.35305 * 125.86764 * 124.71209 * 21 20 19 23 23 C 1.35350 * 106.17583 * 179.90865 * 22 21 20 24 24 N 1.33768 * 106.49625 * 0.35318 * 23 22 21 25 25 N 1.28632 * 108.88824 * 359.77486 * 24 23 22 26 26 C 1.46928 * 118.89841 * 54.34776 * 16 15 14 27 27 C 1.52110 * 110.50739 * 83.33374 * 12 11 10 28 28 H 0.97002 * 120.00420 * 174.93157 * 1 2 3 29 29 H 1.09003 * 109.87408 * 300.38969 * 10 9 7 30 30 H 1.09002 * 109.87658 * 61.53556 * 10 9 7 31 31 H 1.08995 * 110.73251 * 139.85226 * 11 10 9 32 32 H 1.09004 * 110.72660 * 263.15810 * 11 10 9 33 33 H 1.09003 * 110.37719 * 275.51894 * 13 9 7 34 34 H 1.08995 * 110.38134 * 37.87499 * 13 9 7 35 35 H 1.08994 * 109.47603 * 55.89370 * 14 12 11 36 36 H 1.09001 * 109.48068 * 175.91999 * 14 12 11 37 37 H 1.08992 * 109.59858 * 186.93829 * 15 14 12 38 38 H 1.08995 * 109.59725 * 66.46106 * 15 14 12 39 39 H 1.08997 * 109.47266 * 299.99573 * 19 17 16 40 40 H 1.08993 * 109.47410 * 59.99931 * 19 17 16 41 41 H 1.08991 * 109.47361 * 299.99693 * 20 19 17 42 42 H 1.09004 * 109.47042 * 60.00382 * 20 19 17 43 43 H 1.08006 * 126.91436 * 0.02562 * 22 21 20 44 44 H 1.08001 * 126.75668 * 180.12821 * 23 22 21 45 45 H 1.08999 * 109.60337 * 185.89135 * 26 16 15 46 46 H 1.09002 * 109.73805 * 65.48129 * 26 16 15 47 47 H 1.08999 * 109.47619 * 184.07927 * 27 12 11 48 48 H 1.08999 * 109.47536 * 304.09031 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2903 2.7435 0.1290 5 1 3.1981 1.6420 1.1428 6 1 3.0046 1.7537 -1.2718 7 6 2.0102 -1.2021 -0.0005 8 1 1.4955 -2.1230 0.2309 9 7 3.3476 -1.2205 -0.2944 10 6 4.1193 -0.0961 -0.8451 11 6 5.5723 -0.5850 -1.0337 12 6 5.4140 -2.1196 -1.0913 13 6 4.2536 -2.3698 -0.1047 14 6 6.6835 -2.8048 -0.6091 15 6 7.8369 -2.4726 -1.5636 16 7 7.4250 -2.8065 -2.9338 17 6 8.1765 -3.6271 -3.6943 18 8 7.8274 -3.8957 -4.8243 19 6 9.4506 -4.2110 -3.1405 20 6 10.1061 -5.1007 -4.1988 21 7 11.3450 -5.6679 -3.6607 22 6 11.6523 -6.9840 -3.5971 23 6 12.8819 -7.0575 -3.0363 24 7 13.2584 -5.7997 -2.7803 25 7 12.3259 -5.0000 -3.1619 26 6 6.1806 -2.2304 -3.4615 27 6 5.0368 -2.5641 -2.4962 28 1 -0.4851 -0.8367 -0.0742 29 1 3.7018 0.2046 -1.8060 30 1 4.0979 0.7436 -0.1504 31 1 5.9893 -0.2047 -1.9662 32 1 6.1910 -0.2924 -0.1853 33 1 4.6231 -2.3967 0.9205 34 1 3.7422 -3.3008 -0.3493 35 1 6.9282 -2.4528 0.3930 36 1 6.5287 -3.8836 -0.5879 37 1 8.7155 -3.0580 -1.2929 38 1 8.0691 -1.4096 -1.5003 39 1 10.1325 -3.4047 -2.8703 40 1 9.2233 -4.8063 -2.2562 41 1 9.4242 -5.9070 -4.4686 42 1 10.3335 -4.5057 -5.0834 43 1 11.0404 -7.8098 -3.9291 44 1 13.4465 -7.9552 -2.8319 45 1 5.9675 -2.6561 -4.4420 46 1 6.2830 -1.1486 -3.5469 47 1 4.8588 -3.6394 -2.5017 48 1 4.1320 -2.0443 -2.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035178513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:16 Heat of formation + Delta-G solvation = 76.462635 kcal Electronic energy + Delta-G solvation = -29076.655055 eV Core-core repulsion = 25168.954314 eV Total energy + Delta-G solvation = -3907.700741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.16245 -41.72004 -40.20902 -37.47502 -36.24436 -34.97955 -33.20752 -32.67460 -31.94323 -31.52382 -30.64686 -28.73242 -26.57654 -25.39790 -24.22622 -24.15872 -23.55494 -22.47396 -22.19398 -20.80466 -19.83653 -19.12893 -18.61208 -17.64510 -17.51723 -17.06168 -16.86366 -16.75840 -16.60399 -15.77271 -15.57605 -15.33360 -15.18763 -15.00385 -14.84984 -14.71843 -14.37021 -14.09756 -13.97502 -13.68221 -13.47077 -13.14810 -13.04072 -12.90437 -12.80160 -12.59244 -12.42101 -12.19628 -11.92035 -11.84221 -11.70041 -11.59334 -11.45011 -11.33914 -11.12705 -10.97534 -10.87312 -10.62800 -10.30094 -9.67251 -9.06489 -8.65675 -5.47260 0.68152 1.33499 1.38920 1.48668 1.51222 1.66444 1.71241 2.02014 2.54453 3.11705 3.31638 3.38783 3.43240 3.52957 3.63441 3.72250 3.77883 3.83415 4.04404 4.11013 4.23896 4.24553 4.28149 4.30210 4.36524 4.43864 4.47173 4.58426 4.62587 4.63633 4.70126 4.74312 4.77392 4.87620 4.88363 4.90472 5.03689 5.06575 5.08793 5.23607 5.31192 5.35909 5.40640 5.51739 5.58922 5.66050 6.10221 6.35036 6.82746 7.04174 7.45863 7.55271 8.10520 8.87081 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.002268 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.945704 B =12343.255526 C =12463.516539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.085 4.085 3 Si 1.113 2.887 4 H -0.316 1.316 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.306 4.306 8 H 0.041 0.959 9 N -0.632 5.632 10 C 0.100 3.900 11 C -0.111 4.111 12 C -0.058 4.058 13 C 0.140 3.860 14 C -0.112 4.112 15 C 0.106 3.894 16 N -0.603 5.603 17 C 0.523 3.477 18 O -0.581 6.581 19 C -0.143 4.143 20 C 0.131 3.869 21 N -0.289 5.289 22 C -0.034 4.034 23 C -0.066 4.066 24 N -0.313 5.313 25 N -0.122 5.122 26 C 0.120 3.880 27 C -0.105 4.105 28 H 0.246 0.754 29 H 0.029 0.971 30 H 0.021 0.979 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.231 0.769 44 H 0.216 0.784 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.870 -12.787 -7.284 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.277 4.277 3 Si 0.942 3.058 4 H -0.246 1.246 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.435 4.435 8 H 0.059 0.941 9 N -0.360 5.360 10 C -0.024 4.024 11 C -0.148 4.148 12 C -0.059 4.059 13 C 0.015 3.985 14 C -0.150 4.150 15 C -0.015 4.015 16 N -0.335 5.335 17 C 0.312 3.688 18 O -0.461 6.461 19 C -0.184 4.184 20 C 0.011 3.989 21 N -0.083 5.083 22 C -0.185 4.185 23 C -0.223 4.223 24 N -0.178 5.178 25 N -0.101 5.101 26 C -0.003 4.003 27 C -0.144 4.144 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.151 0.849 42 H 0.122 0.878 43 H 0.247 0.753 44 H 0.232 0.768 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 26.957 -9.891 -7.457 29.666 hybrid contribution -1.670 -2.823 -0.040 3.280 sum 25.287 -12.713 -7.497 29.279 Atomic orbital electron populations 1.70998 1.07081 1.28344 1.54778 1.27172 0.96536 1.04614 0.99352 0.83333 0.72317 0.71833 0.78353 1.24588 1.21160 1.17627 1.20039 0.84334 0.94458 1.44675 0.94066 1.44945 1.04807 1.11337 1.74900 1.22146 0.93662 0.90919 0.95686 1.22685 0.93820 0.94621 1.03677 1.21024 0.95007 0.95478 0.94426 1.21775 0.90304 0.89729 0.96704 1.21717 0.92456 1.00901 0.99944 1.22067 0.97541 1.03121 0.78803 1.48156 1.23144 1.46735 1.15430 1.20580 0.85277 0.77974 0.84982 1.90717 1.73354 1.61701 1.20370 1.21837 0.94553 1.01815 1.00165 1.21936 0.80286 1.00312 0.96406 1.47700 1.15068 1.06346 1.39218 1.24424 1.00038 0.87892 1.06183 1.24237 0.96460 0.97104 1.04531 1.75079 1.21211 1.02420 1.19098 1.78251 0.94211 1.22276 1.15351 1.21550 0.82665 0.98857 0.97207 1.21520 0.97740 1.00775 0.94320 0.94543 0.95312 0.96219 0.88649 0.88965 0.95069 0.95516 0.88652 0.91085 0.86881 0.89176 0.86277 0.86160 0.84922 0.87821 0.75286 0.76774 0.90128 0.90060 0.92427 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.29 13.70 21.65 0.30 -62.99 16 2 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 3 Si 1.11 54.14 24.53 68.60 1.68 55.83 16 4 H -0.32 -15.98 7.11 99.48 0.71 -15.27 16 5 H -0.28 -12.93 6.84 99.48 0.68 -12.25 16 6 H -0.25 -10.67 5.43 99.48 0.54 -10.13 16 7 C -0.31 -17.85 10.56 84.03 0.89 -16.96 16 8 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 9 N -0.63 -29.68 3.31 -692.29 -2.29 -31.97 16 10 C 0.10 3.94 4.24 86.76 0.37 4.31 16 11 C -0.11 -2.87 4.91 31.56 0.16 -2.71 16 12 C -0.06 -1.48 0.55 -51.84 -0.03 -1.50 16 13 C 0.14 5.08 6.16 86.63 0.53 5.61 16 14 C -0.11 -1.80 4.84 30.42 0.15 -1.66 16 15 C 0.11 1.23 6.07 86.42 0.52 1.75 16 16 N -0.60 -9.92 2.96 -818.31 -2.42 -12.35 16 17 C 0.52 8.70 7.70 87.66 0.67 9.38 16 18 O -0.58 -13.85 15.39 -3.01 -0.05 -13.90 16 19 C -0.14 -1.40 4.17 29.85 0.12 -1.28 16 20 C 0.13 1.28 5.74 86.38 0.50 1.78 16 21 N -0.29 -3.75 3.44 -347.73 -1.20 -4.95 16 22 C -0.03 -0.30 11.57 83.49 0.97 0.67 16 23 C -0.07 -0.82 12.05 83.73 1.01 0.19 16 24 N -0.31 -6.56 12.41 -58.26 -0.72 -7.28 16 25 N -0.12 -2.42 12.91 37.02 0.48 -1.94 16 26 C 0.12 2.53 6.12 86.41 0.53 3.06 16 27 C -0.11 -2.76 4.87 30.42 0.15 -2.61 16 28 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 29 H 0.03 1.22 6.78 -2.39 -0.02 1.20 16 30 H 0.02 0.84 3.81 -2.39 -0.01 0.83 16 31 H 0.10 2.02 6.18 -2.39 -0.01 2.01 16 32 H 0.09 2.00 7.98 -2.38 -0.02 1.98 16 33 H 0.03 1.10 8.00 -2.39 -0.02 1.09 16 34 H 0.03 1.03 8.03 -2.39 -0.02 1.01 16 35 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 0.72 5.91 -2.39 -0.01 0.70 16 38 H 0.09 0.89 7.62 -2.39 -0.02 0.87 16 39 H 0.12 1.09 7.90 -2.39 -0.02 1.07 16 40 H 0.12 0.82 7.70 -2.39 -0.02 0.80 16 41 H 0.13 0.86 8.03 -2.39 -0.02 0.84 16 42 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.23 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.08 1.93 6.99 -2.39 -0.02 1.91 16 46 H 0.08 1.59 6.56 -2.39 -0.02 1.57 16 47 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.05 1.79 7.82 -2.39 -0.02 1.77 16 Total: -1.00 -83.53 367.76 3.51 -80.02 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.73 Total: 4.16 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 7.00 Total: -4.63 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.86 Total: -121.48 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.05 Total: -13.90 kcal Atomic # 14 Polarization: 54.14 SS G_CDS: 1.68 Total: 55.83 kcal Total: -83.53 3.51 -80.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035178513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.486 kcal (2) G-P(sol) polarization free energy of solvation -83.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds