Wall clock time and date at job start Tue Mar 31 2020 18:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99595 * 2 1 4 4 H 1.48501 * 109.46868 * 239.99696 * 3 2 1 5 5 H 1.48494 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47355 * 120.00147 * 3 2 1 7 7 C 1.38808 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47082 * 125.63097 * 0.03124 * 9 7 2 11 11 C 1.54452 * 107.30006 * 178.98828 * 10 9 7 12 12 C 1.54392 * 102.87089 * 338.49653 * 11 10 9 13 13 C 1.47575 * 125.62969 * 180.02562 * 9 7 2 14 14 C 1.52116 * 110.50327 * 152.62869 * 12 11 10 15 15 C 1.53344 * 109.43769 * 64.09011 * 14 12 11 16 16 N 1.46928 * 108.69070 * 53.29696 * 15 14 12 17 17 C 1.34774 * 120.55307 * 125.62976 * 16 15 14 18 18 O 1.21282 * 120.00079 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99894 * 0.03054 * 17 16 15 20 20 C 1.53000 * 109.47214 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.47322 * 179.97438 * 20 19 17 22 22 C 1.35352 * 126.91201 * 84.99601 * 21 20 19 23 23 N 1.33762 * 106.50046 * 179.97438 * 22 21 20 24 24 N 1.28640 * 108.88308 * 359.97438 * 23 22 21 25 25 N 1.28711 * 110.17734 * 359.76109 * 24 23 22 26 26 H 0.96997 * 125.87101 * 180.23639 * 25 24 23 27 27 C 1.46933 * 118.89582 * 305.65500 * 16 15 14 28 28 C 1.52104 * 110.51443 * 276.65606 * 12 11 10 29 29 H 0.96994 * 120.00515 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.87639 * 59.56025 * 10 9 7 31 31 H 1.09000 * 109.87345 * 298.41491 * 10 9 7 32 32 H 1.09004 * 110.73256 * 220.15225 * 11 10 9 33 33 H 1.09010 * 110.73343 * 96.84160 * 11 10 9 34 34 H 1.08998 * 110.37680 * 84.51038 * 13 9 7 35 35 H 1.09005 * 110.37597 * 322.17175 * 13 9 7 36 36 H 1.08995 * 109.47344 * 184.07835 * 14 12 11 37 37 H 1.08994 * 109.47905 * 304.09941 * 14 12 11 38 38 H 1.08998 * 109.59629 * 173.05656 * 15 14 12 39 39 H 1.08996 * 109.60228 * 293.53354 * 15 14 12 40 40 H 1.09003 * 109.46960 * 299.99106 * 19 17 16 41 41 H 1.08994 * 109.47424 * 59.99142 * 19 17 16 42 42 H 1.09003 * 109.46493 * 299.99473 * 20 19 17 43 43 H 1.08994 * 109.47559 * 59.99306 * 20 19 17 44 44 H 1.08008 * 126.74908 * 359.94204 * 22 21 20 45 45 H 1.08995 * 109.60447 * 294.58627 * 27 16 15 46 46 H 1.09003 * 109.60449 * 174.10791 * 27 16 15 47 47 H 1.08998 * 109.47760 * 55.90678 * 28 12 11 48 48 H 1.08995 * 109.47804 * 175.92477 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1380 -2.5324 -0.0007 11 6 -0.4503 -4.0448 -0.0266 12 6 0.8507 -4.6550 -0.5913 13 6 1.9348 -3.7322 -0.0005 14 6 1.0297 -6.0814 -0.0941 15 6 -0.1065 -6.9571 -0.6361 16 7 -0.1636 -6.8038 -2.0962 17 6 -0.1083 -7.8833 -2.9011 18 8 -0.1559 -7.7451 -4.1051 19 6 0.0125 -9.2622 -2.3051 20 6 0.0543 -10.3011 -3.4275 21 6 0.1757 -11.6799 -2.8316 22 6 -0.8334 -12.4662 -2.3895 23 7 -0.2692 -13.5951 -1.9462 24 7 1.0049 -13.5135 -2.1039 25 7 1.3149 -12.3836 -2.6367 26 1 2.2113 -12.0865 -2.8580 27 6 -0.2815 -5.4538 -2.6643 28 6 0.8557 -4.5868 -2.1108 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5577 -2.0520 -0.8844 31 1 -0.5547 -2.0833 0.9009 32 1 -1.2925 -4.2536 -0.6864 33 1 -0.6456 -4.4159 0.9796 34 1 2.1804 -4.0376 1.0165 35 1 2.8265 -3.7448 -0.6272 36 1 1.9863 -6.4704 -0.4428 37 1 1.0085 -6.0919 0.9956 38 1 0.0846 -8.0005 -0.3852 39 1 -1.0529 -6.6406 -0.1978 40 1 0.9283 -9.3249 -1.7173 41 1 -0.8459 -9.4567 -1.6622 42 1 -0.8617 -10.2382 -4.0150 43 1 0.9125 -10.1068 -4.0707 44 1 -1.8870 -12.2286 -2.3933 45 1 -1.2415 -5.0211 -2.3827 46 1 -0.2060 -5.5062 -3.7504 47 1 0.7131 -3.5540 -2.4287 48 1 1.8099 -4.9547 -2.4879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035228987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:51 Heat of formation + Delta-G solvation = 78.005792 kcal Electronic energy + Delta-G solvation = -28905.924258 eV Core-core repulsion = 24998.290433 eV Total energy + Delta-G solvation = -3907.633825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.69070 -40.57481 -38.80395 -35.92095 -34.88432 -33.56277 -33.12942 -31.43058 -30.87632 -30.01172 -28.77411 -26.95004 -25.44615 -24.20018 -23.37769 -23.10233 -22.62367 -21.90920 -20.15468 -19.72549 -18.70876 -18.01490 -17.25157 -16.59425 -16.52404 -15.99554 -15.84293 -15.11433 -14.82765 -14.71397 -14.44621 -14.25500 -13.95864 -13.69971 -13.55101 -13.20028 -13.03081 -12.70129 -12.50904 -12.20733 -12.13332 -11.97718 -11.78496 -11.66270 -11.24849 -11.21046 -11.03670 -10.97585 -10.93858 -10.74205 -10.62439 -10.25731 -10.11262 -10.03975 -9.79173 -9.69711 -9.62178 -9.52894 -8.64290 -8.59671 -6.84217 -5.73103 -3.06239 1.12941 2.16097 2.32379 2.45256 2.88544 3.38374 3.42965 3.43988 3.93168 4.21392 4.41135 4.46902 4.48265 4.59026 4.74462 4.80502 4.88981 4.99895 5.03796 5.05854 5.16472 5.34823 5.38197 5.45605 5.48908 5.50786 5.51366 5.63788 5.73797 5.79834 5.88295 5.92793 6.03907 6.08076 6.12296 6.26763 6.37665 6.41085 6.49189 6.55961 6.62482 6.77972 6.90106 7.30545 7.53920 7.60551 7.80676 8.00942 8.05389 8.24263 9.20671 9.80951 10.47228 11.38372 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.002125 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.203863 B =13174.996670 C =13342.543941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.138 4.138 12 C -0.071 4.071 13 C 0.146 3.854 14 C -0.117 4.117 15 C 0.107 3.893 16 N -0.604 5.604 17 C 0.514 3.486 18 O -0.547 6.547 19 C -0.137 4.137 20 C -0.033 4.033 21 C -0.006 4.006 22 C -0.046 4.046 23 N -0.266 5.266 24 N -0.083 5.083 25 N -0.389 5.389 26 H 0.448 0.552 27 C 0.111 3.889 28 C -0.109 4.109 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.192 0.808 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -20.977 -4.032 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.176 4.176 12 C -0.072 4.072 13 C 0.020 3.980 14 C -0.156 4.156 15 C -0.016 4.016 16 N -0.337 5.337 17 C 0.302 3.698 18 O -0.426 6.426 19 C -0.177 4.177 20 C -0.073 4.073 21 C -0.140 4.140 22 C -0.203 4.203 23 N -0.133 5.133 24 N -0.063 5.063 25 N -0.110 5.110 26 H 0.294 0.706 27 C -0.011 4.011 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.209 0.791 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.815 -22.066 -4.078 22.455 hybrid contribution 0.685 2.253 -0.297 2.373 sum -0.130 -19.814 -4.375 20.291 Atomic orbital electron populations 1.69948 1.04830 1.25097 1.57102 1.24785 0.95711 0.97609 1.02347 0.86219 0.78466 0.83319 0.77871 1.21213 1.21623 1.21235 1.18992 0.90347 0.82488 1.43774 0.90655 1.44495 1.01643 0.99758 1.87154 1.21137 0.84280 0.88241 1.00833 1.22944 0.95758 0.99657 0.99219 1.21033 0.98014 0.93318 0.94876 1.21472 0.93956 0.86061 0.96508 1.21739 0.97815 0.95237 1.00796 1.21847 1.00100 1.00246 0.79384 1.48162 1.71821 1.06777 1.06910 1.20443 0.76327 0.86224 0.86849 1.90704 1.50782 1.86559 1.14527 1.21693 1.04958 0.91848 0.99239 1.19891 1.06004 0.84832 0.96566 1.22351 0.86528 0.98413 1.06721 1.23473 1.01133 0.91428 1.04303 1.75121 0.98992 1.21518 1.17667 1.78318 1.10297 1.02837 1.14891 1.45170 1.10798 1.12785 1.42253 0.70645 1.21778 0.99434 0.80466 0.99419 1.21616 0.97563 1.00818 0.94722 0.93745 0.93731 0.94248 0.92199 0.92576 0.96522 0.94610 0.91916 0.90531 0.90195 0.90749 0.88841 0.88109 0.87709 0.89441 0.79134 0.91022 0.89271 0.89392 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.31 55.49 0.57 -25.98 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.19 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.71 3.39 -170.31 -0.58 -15.28 16 10 C 0.18 4.12 5.00 -2.96 -0.01 4.10 16 11 C -0.14 -2.28 4.92 -25.24 -0.12 -2.41 16 12 C -0.07 -1.07 0.55 -154.09 -0.08 -1.16 16 13 C 0.15 2.82 6.15 -2.86 -0.02 2.80 16 14 C -0.12 -1.31 4.84 -27.00 -0.13 -1.44 16 15 C 0.11 0.96 6.07 -3.63 -0.02 0.94 16 16 N -0.60 -6.54 2.96 -172.58 -0.51 -7.05 16 17 C 0.51 5.37 7.70 -10.99 -0.08 5.28 16 18 O -0.55 -7.62 15.39 5.56 0.09 -7.53 16 19 C -0.14 -0.85 4.02 -27.88 -0.11 -0.96 16 20 C -0.03 -0.19 5.07 -27.88 -0.14 -0.33 16 21 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 22 C -0.05 -0.36 11.99 -17.74 -0.21 -0.57 16 23 N -0.27 -2.88 12.41 30.23 0.38 -2.50 16 24 N -0.08 -0.83 13.38 60.35 0.81 -0.02 16 25 N -0.39 -2.54 6.98 33.54 0.23 -2.31 16 26 H 0.45 1.40 8.96 -190.41 -1.71 -0.31 16 27 C 0.11 1.44 6.12 -3.63 -0.02 1.41 16 28 C -0.11 -1.63 4.86 -27.01 -0.13 -1.76 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.04 1.14 7.38 -51.93 -0.38 0.76 16 31 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 32 H 0.06 0.91 6.17 -51.93 -0.32 0.59 16 33 H 0.06 0.87 7.98 -51.92 -0.41 0.46 16 34 H 0.02 0.33 7.99 -51.93 -0.41 -0.09 16 35 H 0.04 0.69 8.03 -51.93 -0.42 0.27 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.08 0.50 5.91 -51.93 -0.31 0.19 16 39 H 0.07 0.67 7.62 -51.93 -0.40 0.27 16 40 H 0.09 0.48 7.70 -51.93 -0.40 0.08 16 41 H 0.10 0.49 7.93 -51.93 -0.41 0.08 16 42 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.19 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 46 H 0.09 1.23 6.99 -51.93 -0.36 0.87 16 47 H 0.09 1.58 7.82 -51.93 -0.41 1.17 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 374.59 15.07 5.64 5.64 Total: -1.00 -34.03 374.59 -9.02 -43.05 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.74 Total: -3.48 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.89 Total: -1.34 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.90 Total: -53.15 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.03 -9.02 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035228987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.060 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds