Wall clock time and date at job start Tue Mar 31 2020 18:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99595 * 2 1 4 4 H 1.48501 * 109.46868 * 239.99696 * 3 2 1 5 5 H 1.48494 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47355 * 120.00147 * 3 2 1 7 7 C 1.38808 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47082 * 125.63097 * 0.03124 * 9 7 2 11 11 C 1.54452 * 107.30006 * 178.98828 * 10 9 7 12 12 C 1.54392 * 102.87089 * 338.49653 * 11 10 9 13 13 C 1.47575 * 125.62969 * 180.02562 * 9 7 2 14 14 C 1.52116 * 110.50327 * 152.62869 * 12 11 10 15 15 C 1.53344 * 109.43769 * 64.09011 * 14 12 11 16 16 N 1.46928 * 108.69070 * 53.29696 * 15 14 12 17 17 C 1.34774 * 120.55307 * 125.62976 * 16 15 14 18 18 O 1.21282 * 120.00079 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99894 * 0.03054 * 17 16 15 20 20 C 1.53000 * 109.47214 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.47322 * 179.97438 * 20 19 17 22 22 C 1.35352 * 126.91201 * 84.99601 * 21 20 19 23 23 N 1.33762 * 106.50046 * 179.97438 * 22 21 20 24 24 N 1.28640 * 108.88308 * 359.97438 * 23 22 21 25 25 N 1.28711 * 110.17734 * 359.76109 * 24 23 22 26 26 H 0.96997 * 125.87101 * 180.23639 * 25 24 23 27 27 C 1.46933 * 118.89582 * 305.65500 * 16 15 14 28 28 C 1.52104 * 110.51443 * 276.65606 * 12 11 10 29 29 H 0.96994 * 120.00515 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.87639 * 59.56025 * 10 9 7 31 31 H 1.09000 * 109.87345 * 298.41491 * 10 9 7 32 32 H 1.09004 * 110.73256 * 220.15225 * 11 10 9 33 33 H 1.09010 * 110.73343 * 96.84160 * 11 10 9 34 34 H 1.08998 * 110.37680 * 84.51038 * 13 9 7 35 35 H 1.09005 * 110.37597 * 322.17175 * 13 9 7 36 36 H 1.08995 * 109.47344 * 184.07835 * 14 12 11 37 37 H 1.08994 * 109.47905 * 304.09941 * 14 12 11 38 38 H 1.08998 * 109.59629 * 173.05656 * 15 14 12 39 39 H 1.08996 * 109.60228 * 293.53354 * 15 14 12 40 40 H 1.09003 * 109.46960 * 299.99106 * 19 17 16 41 41 H 1.08994 * 109.47424 * 59.99142 * 19 17 16 42 42 H 1.09003 * 109.46493 * 299.99473 * 20 19 17 43 43 H 1.08994 * 109.47559 * 59.99306 * 20 19 17 44 44 H 1.08008 * 126.74908 * 359.94204 * 22 21 20 45 45 H 1.08995 * 109.60447 * 294.58627 * 27 16 15 46 46 H 1.09003 * 109.60449 * 174.10791 * 27 16 15 47 47 H 1.08998 * 109.47760 * 55.90678 * 28 12 11 48 48 H 1.08995 * 109.47804 * 175.92477 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1380 -2.5324 -0.0007 11 6 -0.4503 -4.0448 -0.0266 12 6 0.8507 -4.6550 -0.5913 13 6 1.9348 -3.7322 -0.0005 14 6 1.0297 -6.0814 -0.0941 15 6 -0.1065 -6.9571 -0.6361 16 7 -0.1636 -6.8038 -2.0962 17 6 -0.1083 -7.8833 -2.9011 18 8 -0.1559 -7.7451 -4.1051 19 6 0.0125 -9.2622 -2.3051 20 6 0.0543 -10.3011 -3.4275 21 6 0.1757 -11.6799 -2.8316 22 6 -0.8334 -12.4662 -2.3895 23 7 -0.2692 -13.5951 -1.9462 24 7 1.0049 -13.5135 -2.1039 25 7 1.3149 -12.3836 -2.6367 26 1 2.2113 -12.0865 -2.8580 27 6 -0.2815 -5.4538 -2.6643 28 6 0.8557 -4.5868 -2.1108 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5577 -2.0520 -0.8844 31 1 -0.5547 -2.0833 0.9009 32 1 -1.2925 -4.2536 -0.6864 33 1 -0.6456 -4.4159 0.9796 34 1 2.1804 -4.0376 1.0165 35 1 2.8265 -3.7448 -0.6272 36 1 1.9863 -6.4704 -0.4428 37 1 1.0085 -6.0919 0.9956 38 1 0.0846 -8.0005 -0.3852 39 1 -1.0529 -6.6406 -0.1978 40 1 0.9283 -9.3249 -1.7173 41 1 -0.8459 -9.4567 -1.6622 42 1 -0.8617 -10.2382 -4.0150 43 1 0.9125 -10.1068 -4.0707 44 1 -1.8870 -12.2286 -2.3933 45 1 -1.2415 -5.0211 -2.3827 46 1 -0.2060 -5.5062 -3.7504 47 1 0.7131 -3.5540 -2.4287 48 1 1.8099 -4.9547 -2.4879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035228987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:50 Heat of formation + Delta-G solvation = 54.729501 kcal Electronic energy + Delta-G solvation = -28906.933594 eV Core-core repulsion = 24998.290433 eV Total energy + Delta-G solvation = -3908.643161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.25750 -41.55449 -39.96777 -37.20576 -35.46507 -34.76778 -34.12064 -32.53057 -32.28670 -30.77560 -30.38252 -28.30231 -26.36044 -25.75834 -24.12054 -23.92757 -23.72018 -22.51692 -21.93696 -20.65235 -19.34470 -19.21061 -18.50529 -17.85631 -17.17019 -16.81827 -16.70528 -16.62679 -16.31395 -15.69065 -15.39473 -15.23107 -14.98929 -14.76433 -14.47716 -14.35046 -14.06744 -13.89321 -13.78616 -13.43267 -13.19749 -12.99498 -12.91546 -12.72412 -12.70141 -12.32117 -12.25930 -12.17744 -12.02994 -11.96996 -11.77562 -11.75287 -11.56105 -11.45892 -11.22151 -11.07752 -10.73806 -10.67320 -10.11400 -9.55491 -8.85093 -7.83840 -5.17975 0.59353 1.44148 1.46824 1.53109 1.56919 1.69085 1.87704 2.11335 2.49506 3.33620 3.37342 3.63579 3.69011 3.73667 3.84043 3.91435 3.95728 4.04119 4.11858 4.18893 4.31247 4.33641 4.35731 4.53055 4.55338 4.61283 4.67728 4.73390 4.78857 4.83797 4.85440 4.97022 4.99480 5.05262 5.09227 5.13609 5.14784 5.21592 5.25332 5.44234 5.45785 5.48073 5.66676 5.74340 5.83380 6.01388 6.22417 6.51690 7.12887 7.22278 7.46937 7.81457 8.45494 9.25919 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.002125 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.203863 B =13174.996670 C =13342.543941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.078 0.922 9 N -0.626 5.626 10 C 0.187 3.813 11 C -0.120 4.120 12 C -0.057 4.057 13 C 0.139 3.861 14 C -0.112 4.112 15 C 0.108 3.892 16 N -0.605 5.605 17 C 0.512 3.488 18 O -0.587 6.587 19 C -0.128 4.128 20 C -0.025 4.025 21 C 0.010 3.990 22 C -0.053 4.053 23 N -0.304 5.304 24 N -0.113 5.113 25 N -0.375 5.375 26 H 0.461 0.539 27 C 0.120 3.880 28 C -0.101 4.101 29 H 0.245 0.755 30 H 0.005 0.995 31 H -0.001 1.001 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.214 0.786 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.046 0.954 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -23.333 -3.399 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.062 3.938 11 C -0.158 4.158 12 C -0.058 4.058 13 C 0.014 3.986 14 C -0.150 4.150 15 C -0.014 4.014 16 N -0.338 5.338 17 C 0.303 3.697 18 O -0.468 6.468 19 C -0.168 4.168 20 C -0.065 4.065 21 C -0.125 4.125 22 C -0.211 4.211 23 N -0.170 5.170 24 N -0.093 5.093 25 N -0.098 5.098 26 H 0.310 0.690 27 C -0.003 4.003 28 C -0.140 4.140 29 H 0.054 0.946 30 H 0.023 0.977 31 H 0.017 0.983 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.231 0.769 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.065 0.935 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.326 -24.478 -3.423 24.718 hybrid contribution 0.599 3.033 -0.544 3.139 sum 0.273 -21.445 -3.966 21.810 Atomic orbital electron populations 1.70182 1.06160 1.25132 1.58491 1.25606 0.96600 1.00878 1.02985 0.85210 0.77174 0.79156 0.78154 1.20498 1.22151 1.20341 1.19384 0.90848 0.84007 1.42622 0.90391 1.44806 1.02517 1.01029 1.86859 1.20889 0.83538 0.92329 0.97001 1.22791 0.97204 0.94737 1.01032 1.20956 0.95066 0.95341 0.94437 1.21725 0.95080 0.84629 0.97146 1.21719 0.99491 0.92089 1.01724 1.22036 0.99458 1.02151 0.77719 1.48215 1.71817 1.05767 1.07956 1.21165 0.74898 0.87396 0.86284 1.90699 1.52380 1.87222 1.16473 1.21719 1.07074 0.88604 0.99418 1.19824 1.06086 0.84138 0.96450 1.22369 0.86084 0.98298 1.05753 1.23961 1.02552 0.90737 1.03856 1.75089 0.99571 1.23221 1.19126 1.78270 1.10322 1.04254 1.16466 1.45204 1.11700 1.11937 1.40981 0.69002 1.21462 0.98239 0.81795 0.98754 1.21472 0.98581 0.98967 0.94955 0.94560 0.97705 0.98273 0.90477 0.90543 0.95586 0.94992 0.90845 0.89071 0.86098 0.90002 0.86644 0.85699 0.87798 0.89408 0.76925 0.91114 0.90498 0.93491 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.24 10.31 21.65 0.22 -57.02 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 3 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.36 10.28 84.03 0.86 -12.49 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.63 -31.29 3.39 -692.74 -2.35 -33.64 16 10 C 0.19 8.94 5.00 86.76 0.43 9.37 16 11 C -0.12 -3.84 4.92 31.56 0.16 -3.68 16 12 C -0.06 -1.62 0.55 -51.91 -0.03 -1.65 16 13 C 0.14 5.27 6.15 86.56 0.53 5.80 16 14 C -0.11 -2.01 4.84 30.42 0.15 -1.86 16 15 C 0.11 1.39 6.07 86.41 0.52 1.91 16 16 N -0.61 -11.05 2.96 -818.30 -2.42 -13.47 16 17 C 0.51 8.94 7.70 87.66 0.67 9.62 16 18 O -0.59 -15.19 15.39 -3.04 -0.05 -15.23 16 19 C -0.13 -0.97 4.02 29.85 0.12 -0.85 16 20 C -0.03 -0.20 5.07 29.85 0.15 -0.05 16 21 C 0.01 0.10 6.56 41.36 0.27 0.37 16 22 C -0.05 -0.68 11.99 83.73 1.00 0.32 16 23 N -0.30 -6.10 12.41 -58.26 -0.72 -6.82 16 24 N -0.11 -2.09 13.38 37.02 0.50 -1.59 16 25 N -0.38 -3.93 6.98 -47.79 -0.33 -4.26 16 26 H 0.46 1.64 8.96 -219.96 -1.97 -0.33 16 27 C 0.12 2.98 6.12 86.41 0.53 3.51 16 28 C -0.10 -3.00 4.86 30.42 0.15 -2.85 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.00 0.26 7.38 -2.39 -0.02 0.24 16 31 H 0.00 -0.05 7.50 -2.39 -0.02 -0.07 16 32 H 0.08 2.23 6.17 -2.38 -0.01 2.21 16 33 H 0.08 2.18 7.98 -2.38 -0.02 2.16 16 34 H 0.03 0.96 7.99 -2.39 -0.02 0.94 16 35 H 0.03 1.22 8.03 -2.38 -0.02 1.20 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 38 H 0.12 0.67 5.91 -2.39 -0.01 0.66 16 39 H 0.08 1.02 7.62 -2.39 -0.02 1.00 16 40 H 0.12 0.47 7.70 -2.39 -0.02 0.45 16 41 H 0.12 0.46 7.93 -2.39 -0.02 0.44 16 42 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 43 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 44 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.07 1.76 6.55 -2.39 -0.02 1.75 16 46 H 0.08 2.11 6.99 -2.39 -0.02 2.10 16 47 H 0.05 1.77 7.82 -2.39 -0.02 1.75 16 48 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.33 374.59 1.87 -77.45 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -0.99 Total: 2.57 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.99 Total: 4.06 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.11 Total: -116.81 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.05 Total: -15.23 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.33 1.87 -77.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035228987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.182 kcal (2) G-P(sol) polarization free energy of solvation -79.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds