Wall clock time and date at job start Tue Mar 31 2020 18:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00080 * 3 2 1 5 5 H 1.48508 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00013 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.53035 * 109.46312 * 182.61605 * 14 12 11 16 16 C 1.53195 * 109.31531 * 178.61669 * 15 14 12 17 17 N 1.46920 * 108.77613 * 54.63348 * 16 15 14 18 18 C 1.34780 * 120.63226 * 126.37262 * 17 16 15 19 19 O 1.21282 * 119.99839 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99640 * 0.02562 * 18 17 16 21 21 N 1.46507 * 109.47010 * 180.02562 * 20 18 17 22 22 N 1.28599 * 124.61523 * 269.70312 * 21 20 18 23 23 C 1.31387 * 108.71404 * 179.82924 * 22 21 20 24 24 C 1.39679 * 105.89552 * 0.41387 * 23 22 21 25 25 N 1.28597 * 124.61631 * 90.00373 * 21 20 18 26 26 C 1.46927 * 118.74004 * 306.39208 * 17 16 15 27 27 C 1.53043 * 109.45784 * 62.54419 * 14 12 11 28 28 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 31 31 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 32 32 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 33 33 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 34 34 H 1.09004 * 109.46297 * 302.57986 * 14 12 11 35 35 H 1.09006 * 109.49797 * 298.56937 * 15 14 12 36 36 H 1.09004 * 109.49947 * 58.66363 * 15 14 12 37 37 H 1.09004 * 109.58212 * 294.84564 * 16 15 14 38 38 H 1.08997 * 109.58776 * 174.42319 * 16 15 14 39 39 H 1.08997 * 109.47800 * 300.00495 * 20 18 17 40 40 H 1.08998 * 109.46758 * 60.00575 * 20 18 17 41 41 H 1.08000 * 127.04909 * 180.16339 * 23 22 21 42 42 H 1.08000 * 127.04539 * 179.72300 * 24 23 22 43 43 H 1.08993 * 109.58928 * 293.82450 * 26 17 16 44 44 H 1.08999 * 109.58793 * 173.39501 * 26 17 16 45 45 H 1.08999 * 109.50332 * 301.33866 * 27 14 12 46 46 H 1.09008 * 109.49359 * 61.40550 * 27 14 12 47 47 H 1.08998 * 109.88222 * 59.56024 * 28 9 7 48 48 H 1.09005 * 110.01447 * 298.46604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.3320 -6.6801 0.3653 16 6 2.6967 -7.8408 1.2963 17 7 1.5070 -8.6796 1.4947 18 6 1.5544 -10.0057 1.2582 19 8 0.5653 -10.6872 1.4254 20 6 2.8366 -10.6413 0.7860 21 7 2.6297 -12.0801 0.6024 22 7 2.8177 -12.9674 1.5140 23 6 2.5366 -14.1501 1.0155 24 6 2.1593 -13.9264 -0.3106 25 7 2.2405 -12.6280 -0.4940 26 6 0.2643 -8.0455 1.9555 27 6 -0.0732 -6.8825 1.0171 28 6 1.9320 -3.7274 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5998 -1.7589 0.6142 31 1 -0.5264 -2.4851 -1.0194 32 1 -1.3589 -4.3329 0.2768 33 1 -0.3532 -3.8980 1.6994 34 1 1.3641 -5.5654 1.9342 35 1 2.0850 -7.0698 -0.6223 36 1 3.1781 -5.9974 0.2863 37 1 3.0311 -7.4477 2.2564 38 1 3.4917 -8.4349 0.8455 39 1 3.1367 -10.1939 -0.1615 40 1 3.6179 -10.4782 1.5284 41 1 2.5907 -15.1006 1.5253 42 1 1.8620 -14.6687 -1.0366 43 1 0.4002 -7.6692 2.9694 44 1 -0.5457 -8.7747 1.9397 45 1 -0.9391 -6.3439 1.4021 46 1 -0.2980 -7.2698 0.0232 47 1 2.5580 -3.8509 0.8843 48 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039144541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:29 Heat of formation + Delta-G solvation = 104.194960 kcal Electronic energy + Delta-G solvation = -28693.036774 eV Core-core repulsion = 24786.538596 eV Total energy + Delta-G solvation = -3906.498177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.79671 -40.57567 -38.57952 -36.74562 -34.26532 -33.76880 -32.65894 -31.88945 -31.46620 -29.45933 -28.58361 -27.66364 -25.29940 -23.88629 -23.47997 -23.14414 -22.27987 -21.00894 -20.02782 -19.50165 -19.40120 -18.12980 -17.66165 -16.87909 -16.38053 -16.13160 -15.72313 -15.16917 -15.07311 -14.68102 -14.51110 -14.30654 -14.16031 -14.02587 -13.57659 -13.47737 -12.94455 -12.71456 -12.57908 -12.39470 -11.89549 -11.77917 -11.61920 -11.45123 -11.24982 -11.09698 -11.04939 -10.94073 -10.79495 -10.60019 -10.56547 -10.49276 -10.14137 -9.96134 -9.83840 -9.74715 -9.53992 -9.46703 -8.94835 -8.64716 -6.82638 -5.65246 -3.06968 1.45339 1.84294 2.11036 2.25804 2.67972 3.39002 3.43189 3.44691 3.84844 3.86188 4.38718 4.47376 4.48242 4.51830 4.69785 4.74727 4.79069 4.89901 5.06322 5.08124 5.14220 5.31976 5.44257 5.48564 5.57150 5.60585 5.63064 5.71915 5.77471 5.82729 5.88403 5.91536 5.97150 6.07021 6.11480 6.28576 6.35295 6.36003 6.40323 6.60312 6.63338 6.77802 6.94837 6.98589 7.53093 7.62458 7.67509 7.86627 8.06425 8.37239 9.22299 9.83765 10.49222 11.38337 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034713 B = 0.002022 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.415849 B =13842.106976 C =14216.959469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.094 4.094 13 H 0.067 0.933 14 C -0.074 4.074 15 C -0.132 4.132 16 C 0.102 3.898 17 N -0.602 5.602 18 C 0.504 3.496 19 O -0.526 6.526 20 C 0.123 3.877 21 N -0.145 5.145 22 N -0.283 5.283 23 C -0.025 4.025 24 C -0.025 4.025 25 N -0.281 5.281 26 C 0.113 3.887 27 C -0.128 4.128 28 C 0.143 3.857 29 H 0.252 0.748 30 H 0.104 0.896 31 H 0.009 0.991 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.198 0.802 42 H 0.198 0.802 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.021 0.979 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -24.406 2.573 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.113 4.113 13 H 0.086 0.914 14 C -0.093 4.093 15 C -0.170 4.170 16 C -0.021 4.021 17 N -0.337 5.337 18 C 0.289 3.711 19 O -0.401 6.401 20 C -0.001 4.001 21 N -0.045 5.045 22 N -0.123 5.123 23 C -0.208 4.208 24 C -0.208 4.208 25 N -0.121 5.121 26 C -0.009 4.009 27 C -0.166 4.166 28 C 0.017 3.983 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.215 0.785 42 H 0.215 0.785 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.039 0.961 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.091 -23.151 2.836 23.873 hybrid contribution 0.359 -0.032 -0.281 0.457 sum 5.451 -23.182 2.555 23.951 Atomic orbital electron populations 1.69793 1.04879 1.24830 1.57601 1.24793 0.95728 0.97718 1.02548 0.86165 0.78405 0.83129 0.77859 1.21260 1.21578 1.21183 1.19024 0.90424 0.82584 1.43069 0.90645 1.44510 1.02023 0.99802 1.86773 1.21919 0.84664 0.92779 0.98056 1.23032 0.96005 0.98752 0.99876 1.22170 0.97307 0.93714 0.98098 0.91414 1.21134 0.93736 0.94548 0.99851 1.22027 0.99754 0.96467 0.98778 1.21950 0.86259 0.92925 1.00943 1.48094 1.13261 1.06111 1.66198 1.20378 0.89741 0.82565 0.78407 1.90777 1.36145 1.61673 1.51522 1.21768 0.98276 0.73576 1.06494 1.47342 1.45683 1.07444 1.03992 1.74044 1.19515 0.98896 1.19846 1.24795 1.04760 0.96726 0.94541 1.24802 1.05702 0.92274 0.98039 1.74062 1.16064 1.10158 1.11815 1.21721 0.86011 0.95477 0.97665 1.21984 0.99093 0.95488 1.00013 1.21298 0.93724 0.85930 0.97348 0.93719 0.87783 0.97280 0.92650 0.92258 0.90751 0.91340 0.89697 0.90286 0.90148 0.84435 0.84509 0.78503 0.78492 0.91033 0.89122 0.90006 0.91585 0.96090 0.96593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.09 55.49 0.56 -26.26 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.61 -15.27 3.39 -170.07 -0.58 -15.84 16 10 C 0.15 3.61 5.89 -2.53 -0.01 3.60 16 11 C -0.14 -2.48 5.50 -24.58 -0.14 -2.62 16 12 C -0.09 -1.48 2.48 -88.79 -0.22 -1.71 16 13 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.07 -0.87 1.54 -90.58 -0.14 -1.01 16 15 C -0.13 -1.24 5.20 -26.61 -0.14 -1.38 16 16 C 0.10 0.73 6.34 -3.71 -0.02 0.71 16 17 N -0.60 -5.77 2.97 -172.77 -0.51 -6.29 16 18 C 0.50 5.67 7.77 -10.99 -0.09 5.59 16 19 O -0.53 -8.28 15.84 5.56 0.09 -8.19 16 20 C 0.12 1.02 5.37 -5.19 -0.03 1.00 16 21 N -0.14 -1.65 3.44 -11.66 -0.04 -1.69 16 22 N -0.28 -3.27 12.05 30.68 0.37 -2.90 16 23 C -0.03 -0.22 12.20 -17.21 -0.21 -0.43 16 24 C -0.03 -0.23 12.20 -17.21 -0.21 -0.44 16 25 N -0.28 -3.32 12.05 30.67 0.37 -2.95 16 26 C 0.11 1.17 6.43 -3.71 -0.02 1.14 16 27 C -0.13 -1.39 5.19 -26.61 -0.14 -1.53 16 28 C 0.14 2.81 5.88 -3.07 -0.02 2.79 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.10 2.82 5.87 -51.93 -0.30 2.52 16 31 H 0.01 0.24 8.14 -51.92 -0.42 -0.19 16 32 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.81 7.27 -51.93 -0.38 0.44 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.35 5.93 -51.93 -0.31 0.04 16 39 H 0.14 0.80 7.69 -51.93 -0.40 0.40 16 40 H 0.14 0.73 7.94 -51.93 -0.41 0.32 16 41 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 45 H 0.08 0.90 7.29 -51.93 -0.38 0.52 16 46 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 47 H 0.02 0.40 7.68 -51.93 -0.40 0.01 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -36.27 378.64 -8.25 -44.52 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.55 Total: -1.95 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.64 Total: -1.04 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.17 Total: -55.93 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.27 -8.25 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039144541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.711 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds