Wall clock time and date at job start Tue Mar 31 2020 18:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00080 * 3 2 1 5 5 H 1.48508 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00013 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.53035 * 109.46312 * 182.61605 * 14 12 11 16 16 C 1.53195 * 109.31531 * 178.61669 * 15 14 12 17 17 N 1.46920 * 108.77613 * 54.63348 * 16 15 14 18 18 C 1.34780 * 120.63226 * 126.37262 * 17 16 15 19 19 O 1.21282 * 119.99839 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99640 * 0.02562 * 18 17 16 21 21 N 1.46507 * 109.47010 * 180.02562 * 20 18 17 22 22 N 1.28599 * 124.61523 * 269.70312 * 21 20 18 23 23 C 1.31387 * 108.71404 * 179.82924 * 22 21 20 24 24 C 1.39679 * 105.89552 * 0.41387 * 23 22 21 25 25 N 1.28597 * 124.61631 * 90.00373 * 21 20 18 26 26 C 1.46927 * 118.74004 * 306.39208 * 17 16 15 27 27 C 1.53043 * 109.45784 * 62.54419 * 14 12 11 28 28 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 31 31 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 32 32 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 33 33 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 34 34 H 1.09004 * 109.46297 * 302.57986 * 14 12 11 35 35 H 1.09006 * 109.49797 * 298.56937 * 15 14 12 36 36 H 1.09004 * 109.49947 * 58.66363 * 15 14 12 37 37 H 1.09004 * 109.58212 * 294.84564 * 16 15 14 38 38 H 1.08997 * 109.58776 * 174.42319 * 16 15 14 39 39 H 1.08997 * 109.47800 * 300.00495 * 20 18 17 40 40 H 1.08998 * 109.46758 * 60.00575 * 20 18 17 41 41 H 1.08000 * 127.04909 * 180.16339 * 23 22 21 42 42 H 1.08000 * 127.04539 * 179.72300 * 24 23 22 43 43 H 1.08993 * 109.58928 * 293.82450 * 26 17 16 44 44 H 1.08999 * 109.58793 * 173.39501 * 26 17 16 45 45 H 1.08999 * 109.50332 * 301.33866 * 27 14 12 46 46 H 1.09008 * 109.49359 * 61.40550 * 27 14 12 47 47 H 1.08998 * 109.88222 * 59.56024 * 28 9 7 48 48 H 1.09005 * 110.01447 * 298.46604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.3320 -6.6801 0.3653 16 6 2.6967 -7.8408 1.2963 17 7 1.5070 -8.6796 1.4947 18 6 1.5544 -10.0057 1.2582 19 8 0.5653 -10.6872 1.4254 20 6 2.8366 -10.6413 0.7860 21 7 2.6297 -12.0801 0.6024 22 7 2.8177 -12.9674 1.5140 23 6 2.5366 -14.1501 1.0155 24 6 2.1593 -13.9264 -0.3106 25 7 2.2405 -12.6280 -0.4940 26 6 0.2643 -8.0455 1.9555 27 6 -0.0732 -6.8825 1.0171 28 6 1.9320 -3.7274 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5998 -1.7589 0.6142 31 1 -0.5264 -2.4851 -1.0194 32 1 -1.3589 -4.3329 0.2768 33 1 -0.3532 -3.8980 1.6994 34 1 1.3641 -5.5654 1.9342 35 1 2.0850 -7.0698 -0.6223 36 1 3.1781 -5.9974 0.2863 37 1 3.0311 -7.4477 2.2564 38 1 3.4917 -8.4349 0.8455 39 1 3.1367 -10.1939 -0.1615 40 1 3.6179 -10.4782 1.5284 41 1 2.5907 -15.1006 1.5253 42 1 1.8620 -14.6687 -1.0366 43 1 0.4002 -7.6692 2.9694 44 1 -0.5457 -8.7747 1.9397 45 1 -0.9391 -6.3439 1.4021 46 1 -0.2980 -7.2698 0.0232 47 1 2.5580 -3.8509 0.8843 48 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039144541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:28 Heat of formation + Delta-G solvation = 79.719982 kcal Electronic energy + Delta-G solvation = -28694.098088 eV Core-core repulsion = 24786.538596 eV Total energy + Delta-G solvation = -3907.559492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.47588 -41.41200 -39.80800 -38.01522 -35.34372 -34.80136 -33.48205 -33.37776 -32.26010 -31.07422 -29.56256 -28.96625 -26.85618 -25.20316 -24.35153 -23.80579 -23.12513 -21.94178 -21.79899 -20.77379 -20.23577 -18.90711 -18.81398 -18.38287 -17.22302 -16.89692 -16.81055 -16.44296 -16.19948 -15.79910 -15.68363 -15.33996 -15.08478 -14.96133 -14.60654 -14.42491 -14.19040 -14.10577 -13.47857 -13.40548 -13.32208 -13.22597 -12.91726 -12.67984 -12.56360 -12.49783 -12.22308 -12.16771 -12.03582 -11.81731 -11.78841 -11.57577 -11.42599 -11.32148 -11.28574 -11.07654 -10.99000 -10.71491 -10.23085 -9.76693 -8.85227 -7.75477 -5.19657 0.74346 1.24008 1.32673 1.46361 1.49583 1.55950 1.62836 1.96447 2.50844 3.19300 3.29794 3.33494 3.67713 3.70181 3.78983 3.90095 3.92528 4.00695 4.10571 4.16683 4.19383 4.29568 4.44353 4.45522 4.47415 4.58832 4.61392 4.74366 4.79375 4.84647 4.89697 4.94634 4.99600 5.06851 5.09867 5.15851 5.20842 5.25287 5.35667 5.43651 5.46594 5.51141 5.59960 5.68452 5.70278 5.85532 6.21036 6.33669 6.89373 7.12811 7.37373 7.82333 8.46427 9.26106 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034713 B = 0.002022 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.415849 B =13842.106976 C =14216.959469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.123 4.123 12 C -0.078 4.078 13 H 0.068 0.932 14 C -0.065 4.065 15 C -0.130 4.130 16 C 0.102 3.898 17 N -0.598 5.598 18 C 0.502 3.498 19 O -0.580 6.580 20 C 0.119 3.881 21 N -0.158 5.158 22 N -0.312 5.312 23 C -0.025 4.025 24 C -0.026 4.026 25 N -0.314 5.314 26 C 0.115 3.885 27 C -0.119 4.119 28 C 0.139 3.861 29 H 0.245 0.755 30 H 0.068 0.932 31 H -0.021 1.021 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.231 0.769 42 H 0.230 0.770 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.033 0.967 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 -26.223 2.979 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.025 3.975 11 C -0.161 4.161 12 C -0.097 4.097 13 H 0.087 0.913 14 C -0.084 4.084 15 C -0.168 4.168 16 C -0.019 4.019 17 N -0.330 5.330 18 C 0.288 3.712 19 O -0.459 6.459 20 C -0.004 4.004 21 N -0.058 5.058 22 N -0.153 5.153 23 C -0.208 4.208 24 C -0.209 4.209 25 N -0.155 5.155 26 C -0.007 4.007 27 C -0.157 4.157 28 C 0.014 3.986 29 H 0.055 0.945 30 H 0.086 0.914 31 H -0.003 1.003 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.181 0.819 40 H 0.185 0.815 41 H 0.248 0.752 42 H 0.246 0.754 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.245 -24.967 3.243 26.198 hybrid contribution -0.309 0.501 -0.438 0.734 sum 6.936 -24.466 2.805 25.584 Atomic orbital electron populations 1.70070 1.06272 1.24937 1.58838 1.25667 0.96643 1.01118 1.03047 0.85127 0.77084 0.78743 0.78230 1.20514 1.22187 1.20062 1.19445 0.91048 0.83906 1.42172 0.90013 1.44862 1.02723 1.01277 1.86686 1.21722 0.84325 0.95427 0.96032 1.22859 0.98059 0.95372 0.99833 1.22073 0.94582 0.93971 0.99057 0.91337 1.21039 0.95262 0.93220 0.98885 1.21990 0.98514 0.97082 0.99192 1.22158 0.85985 0.92265 1.01526 1.48175 1.13653 1.06004 1.65195 1.20921 0.90119 0.82657 0.77455 1.90749 1.38247 1.62942 1.53996 1.22084 0.97134 0.72586 1.08598 1.47595 1.46184 1.08195 1.03779 1.74001 1.20643 0.99966 1.20652 1.25458 1.03372 0.97323 0.94674 1.25452 1.04504 0.92090 0.98883 1.74018 1.17220 1.11565 1.12682 1.21620 0.86249 0.94668 0.98147 1.21877 0.98660 0.95399 0.99799 1.21511 0.95039 0.84351 0.97680 0.94504 0.91381 1.00344 0.90658 0.91730 0.90655 0.91378 0.89360 0.88779 0.86576 0.81926 0.81459 0.75224 0.75357 0.89812 0.90887 0.90156 0.92296 0.94877 0.96428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.24 10.09 21.65 0.22 -57.02 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 3 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.24 -13.19 10.27 84.03 0.86 -12.33 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -32.09 3.39 -691.98 -2.35 -34.44 16 10 C 0.15 7.43 5.89 86.85 0.51 7.94 16 11 C -0.12 -4.35 5.50 31.99 0.18 -4.17 16 12 C -0.08 -2.35 2.48 -9.61 -0.02 -2.37 16 13 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.07 -1.38 1.54 -10.77 -0.02 -1.40 16 15 C -0.13 -2.03 5.20 30.67 0.16 -1.87 16 16 C 0.10 1.07 6.34 86.36 0.55 1.62 16 17 N -0.60 -10.03 2.97 -818.90 -2.43 -12.47 16 18 C 0.50 10.49 7.77 87.66 0.68 11.17 16 19 O -0.58 -18.20 15.84 -3.04 -0.05 -18.25 16 20 C 0.12 1.68 5.37 85.63 0.46 2.14 16 21 N -0.16 -3.35 3.44 -190.80 -0.66 -4.01 16 22 N -0.31 -6.76 12.05 -56.86 -0.69 -7.45 16 23 C -0.03 -0.40 12.20 85.11 1.04 0.63 16 24 C -0.03 -0.43 12.20 85.11 1.04 0.61 16 25 N -0.31 -7.02 12.05 -56.87 -0.69 -7.71 16 26 C 0.12 2.21 6.43 86.37 0.56 2.76 16 27 C -0.12 -2.39 5.19 30.68 0.16 -2.23 16 28 C 0.14 5.30 5.88 86.73 0.51 5.81 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.07 3.87 5.87 -2.39 -0.01 3.86 16 31 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 32 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 33 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.08 1.64 8.12 -2.38 -0.02 1.62 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 36 H 0.09 1.38 7.27 -2.39 -0.02 1.36 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.12 0.44 5.93 -2.39 -0.01 0.43 16 39 H 0.16 1.36 7.69 -2.39 -0.02 1.34 16 40 H 0.17 1.20 7.94 -2.39 -0.02 1.18 16 41 H 0.23 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.70 7.00 -2.39 -0.02 1.68 16 45 H 0.08 1.64 7.29 -2.39 -0.02 1.62 16 46 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.03 1.20 7.68 -2.39 -0.02 1.18 16 48 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -82.91 378.64 3.46 -79.45 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.95 Total: 9.66 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 7.12 Total: 4.66 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -6.59 Total: -123.10 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -82.91 3.46 -79.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039144541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.171 kcal (2) G-P(sol) polarization free energy of solvation -82.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds