Wall clock time and date at job start Tue Mar 31 2020 18:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99777 * 2 1 4 4 H 1.48504 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47202 * 299.99548 * 3 2 1 6 6 H 1.48499 * 109.47289 * 60.00278 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99838 * 207.28307 * 7 2 1 9 9 N 1.36931 * 120.00094 * 27.28196 * 7 2 1 10 10 C 1.47434 * 125.64656 * 13.30664 * 9 7 2 11 11 C 1.55126 * 104.72085 * 155.81833 * 10 9 7 12 12 C 1.55156 * 101.48754 * 37.29781 * 11 10 9 13 13 H 1.09004 * 110.72252 * 82.69187 * 12 11 10 14 14 C 1.52998 * 110.87413 * 205.89838 * 12 11 10 15 15 C 1.53041 * 109.46038 * 295.08750 * 14 12 11 16 16 C 1.53192 * 109.31242 * 178.59845 * 15 14 12 17 17 N 1.46931 * 108.76464 * 54.66202 * 16 15 14 18 18 C 1.34770 * 120.63418 * 126.35663 * 17 16 15 19 19 O 1.21277 * 120.00475 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99768 * 0.02742 * 18 17 16 21 21 N 1.46506 * 109.46844 * 179.97438 * 20 18 17 22 22 N 1.28601 * 124.61540 * 269.69389 * 21 20 18 23 23 C 1.31378 * 108.71515 * 179.83628 * 22 21 20 24 24 C 1.39674 * 105.90099 * 0.40709 * 23 22 21 25 25 N 1.28595 * 124.62004 * 89.99732 * 21 20 18 26 26 C 1.46924 * 118.73555 * 306.38325 * 17 16 15 27 27 C 1.53046 * 109.46079 * 175.03662 * 14 12 11 28 28 C 1.47021 * 125.65173 * 193.62123 * 9 7 2 29 29 H 0.96995 * 120.00585 * 185.85231 * 1 2 3 30 30 H 1.08997 * 110.36794 * 274.75217 * 10 9 7 31 31 H 1.08999 * 110.36056 * 37.07517 * 10 9 7 32 32 H 1.09000 * 111.19658 * 279.19526 * 11 10 9 33 33 H 1.08999 * 110.90589 * 155.27774 * 11 10 9 34 34 H 1.08994 * 109.46217 * 55.06486 * 14 12 11 35 35 H 1.09000 * 109.50144 * 298.56697 * 15 14 12 36 36 H 1.09000 * 109.49436 * 58.66753 * 15 14 12 37 37 H 1.09001 * 109.60130 * 294.87356 * 16 15 14 38 38 H 1.09007 * 109.70130 * 174.50801 * 16 15 14 39 39 H 1.08998 * 109.46817 * 299.99555 * 20 18 17 40 40 H 1.08998 * 109.47054 * 59.99772 * 20 18 17 41 41 H 1.08003 * 127.04547 * 180.16912 * 23 22 21 42 42 H 1.07997 * 127.04573 * 179.72693 * 24 23 22 43 43 H 1.09004 * 109.58610 * 293.82012 * 26 17 16 44 44 H 1.09002 * 109.58542 * 173.39608 * 26 17 16 45 45 H 1.08999 * 109.49861 * 301.33393 * 27 14 12 46 46 H 1.09004 * 109.49892 * 61.40214 * 27 14 12 47 47 H 1.08998 * 109.87752 * 300.43626 * 28 9 7 48 48 H 1.09001 * 109.88483 * 61.45029 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0001 -1.2539 0.4293 9 7 1.4398 -2.3223 -0.5425 10 6 0.2378 -2.3468 -1.3959 11 6 0.3682 -3.6527 -2.2230 12 6 0.9848 -4.6200 -1.1783 13 1 0.2095 -5.0425 -0.5391 14 6 1.7809 -5.7305 -1.8666 15 6 0.8315 -6.6018 -2.6922 16 6 1.6366 -7.6911 -3.4077 17 7 2.4207 -8.4316 -2.4098 18 6 2.3357 -9.7742 -2.3282 19 8 2.9877 -10.3739 -1.4999 20 6 1.4304 -10.5303 -3.2662 21 7 1.5159 -11.9641 -2.9775 22 7 2.3496 -12.7721 -3.5305 23 6 2.1567 -13.9763 -3.0420 24 6 1.1080 -13.8548 -2.1275 25 7 0.7639 -12.5870 -2.1408 26 6 3.2988 -7.6806 -1.5024 27 6 2.4752 -6.5911 -0.8086 28 6 1.9208 -3.7003 -0.3659 29 1 -0.4851 -0.8356 0.0856 30 1 -0.6626 -2.3720 -0.7822 31 1 0.2238 -1.4798 -2.0563 32 1 1.0380 -3.5162 -3.0721 33 1 -0.6098 -4.0043 -2.5516 34 1 2.5299 -5.2872 -2.5227 35 1 0.0973 -7.0653 -2.0332 36 1 0.3198 -5.9840 -3.4302 37 1 2.3084 -7.2323 -4.1331 38 1 0.9578 -8.3738 -3.9190 39 1 0.4029 -10.1926 -3.1304 40 1 1.7397 -10.3481 -4.2953 41 1 2.6958 -14.8765 -3.2981 42 1 0.6695 -14.6419 -1.5320 43 1 4.1062 -7.2209 -2.0725 44 1 3.7151 -8.3558 -0.7547 45 1 3.1336 -5.9658 -0.2057 46 1 1.7254 -7.0543 -0.1671 47 1 2.9413 -3.7874 -0.7389 48 1 1.8874 -3.9723 0.6891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039144544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:32 Heat of formation + Delta-G solvation = 100.348861 kcal Electronic energy + Delta-G solvation = -28716.959015 eV Core-core repulsion = 24810.294058 eV Total energy + Delta-G solvation = -3906.664957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.82569 -40.63156 -38.71327 -36.92796 -34.33009 -33.92575 -32.68666 -32.02023 -31.51242 -29.24625 -28.95471 -27.67211 -25.18748 -24.01925 -23.42774 -23.17187 -22.35512 -21.10114 -20.09399 -19.64159 -19.47566 -18.17794 -17.72145 -17.51263 -16.41992 -16.18378 -15.76545 -15.21847 -15.07876 -14.72531 -14.61043 -14.36511 -14.13251 -13.79290 -13.58049 -13.53838 -13.23101 -13.04106 -12.75548 -12.50818 -12.21118 -11.92240 -11.69371 -11.51340 -11.34462 -11.23675 -11.07751 -10.79420 -10.63879 -10.59266 -10.56740 -10.43833 -10.13940 -10.09498 -10.00128 -9.95528 -9.57083 -9.50556 -9.01568 -8.40230 -6.93122 -6.08757 -3.10695 1.42111 1.81088 2.07122 2.23254 2.63279 3.51233 3.54620 3.67630 3.81190 3.81656 4.32714 4.41437 4.47323 4.54440 4.65161 4.66044 4.76129 4.83606 5.00163 5.02440 5.08532 5.21487 5.29288 5.37720 5.45062 5.47574 5.51919 5.65024 5.69027 5.73742 5.80014 5.84638 5.88980 5.94564 5.99137 6.12409 6.22004 6.25736 6.32157 6.37268 6.44432 6.64006 6.85228 6.90394 7.01084 7.05927 7.63557 7.79969 8.03545 8.49930 9.04567 9.83744 10.39044 11.25016 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038991 B = 0.002001 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.950018 B =13991.574993 C =14225.251973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.029 4.029 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.066 0.934 9 N -0.606 5.606 10 C 0.143 3.857 11 C -0.130 4.130 12 C -0.093 4.093 13 H 0.070 0.930 14 C -0.073 4.073 15 C -0.130 4.130 16 C 0.102 3.898 17 N -0.603 5.603 18 C 0.504 3.496 19 O -0.524 6.524 20 C 0.124 3.876 21 N -0.145 5.145 22 N -0.283 5.283 23 C -0.025 4.025 24 C -0.025 4.025 25 N -0.281 5.281 26 C 0.113 3.887 27 C -0.130 4.130 28 C 0.143 3.857 29 H 0.269 0.731 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.198 0.802 42 H 0.198 0.802 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -24.686 -10.553 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.230 4.230 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.222 1.222 7 C -0.462 4.462 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.018 3.982 11 C -0.168 4.168 12 C -0.112 4.112 13 H 0.088 0.912 14 C -0.092 4.092 15 C -0.168 4.168 16 C -0.020 4.020 17 N -0.337 5.337 18 C 0.289 3.711 19 O -0.399 6.399 20 C -0.001 4.001 21 N -0.045 5.045 22 N -0.123 5.123 23 C -0.208 4.208 24 C -0.208 4.208 25 N -0.121 5.121 26 C -0.008 4.008 27 C -0.168 4.168 28 C 0.017 3.983 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.215 0.785 42 H 0.215 0.785 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.426 -21.897 -10.408 24.286 hybrid contribution 0.189 -2.525 0.433 2.569 sum 1.615 -24.422 -9.975 26.430 Atomic orbital electron populations 1.70720 1.06614 1.30307 1.48862 1.25707 0.96497 1.00943 0.99806 0.83483 0.74325 0.75657 0.76670 1.21900 1.21692 1.22214 1.19814 0.99301 0.87815 1.39237 0.91638 1.44606 1.31014 1.01241 1.56438 1.21580 0.90126 0.94586 0.91923 1.22896 0.99383 0.96960 0.97560 1.22168 0.97685 0.94244 0.97150 0.91198 1.21123 0.97072 0.94685 0.96353 1.21996 0.98213 0.96625 1.00004 1.21933 0.94695 0.94865 0.90551 1.48091 1.44700 1.04950 1.35994 1.20387 0.83167 0.82661 0.84908 1.90782 1.44765 1.67585 1.36813 1.21759 1.03509 0.73265 1.01537 1.47335 1.21772 1.08520 1.26884 1.74041 1.14777 1.01555 1.21938 1.24797 1.00555 0.95995 0.99426 1.24806 0.99590 0.93558 1.02818 1.74063 1.18920 1.07635 1.11499 1.21721 0.92078 0.93874 0.93155 1.22012 0.99973 0.96590 0.98260 1.21314 0.95353 0.85518 0.96110 0.91904 0.95929 0.93057 0.91779 0.92152 0.90689 0.91294 0.89882 0.90328 0.90113 0.84468 0.84531 0.78480 0.78471 0.90983 0.89033 0.89854 0.91493 0.95784 0.96384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.09 12.82 55.49 0.71 -27.37 16 2 C -0.03 -0.83 5.09 -17.43 -0.09 -0.91 16 3 Si 1.07 25.63 30.00 -169.99 -5.10 20.53 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.33 -9.51 10.05 -15.06 -0.15 -9.66 16 8 H 0.07 1.87 7.96 -52.48 -0.42 1.45 16 9 N -0.61 -15.33 3.33 -169.93 -0.57 -15.90 16 10 C 0.14 3.28 5.22 -2.41 -0.01 3.27 16 11 C -0.13 -2.14 5.63 -24.47 -0.14 -2.27 16 12 C -0.09 -1.44 2.48 -88.79 -0.22 -1.66 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.07 -0.83 1.53 -90.58 -0.14 -0.97 16 15 C -0.13 -1.10 5.21 -26.61 -0.14 -1.24 16 16 C 0.10 0.67 6.34 -3.71 -0.02 0.64 16 17 N -0.60 -5.62 2.97 -172.76 -0.51 -6.13 16 18 C 0.50 5.57 7.77 -10.99 -0.09 5.48 16 19 O -0.52 -8.23 15.84 5.56 0.09 -8.14 16 20 C 0.12 0.99 5.37 -5.19 -0.03 0.96 16 21 N -0.15 -1.62 3.44 -11.66 -0.04 -1.66 16 22 N -0.28 -3.22 12.05 30.67 0.37 -2.85 16 23 C -0.02 -0.22 12.20 -17.21 -0.21 -0.43 16 24 C -0.02 -0.22 12.20 -17.21 -0.21 -0.43 16 25 N -0.28 -3.27 12.05 30.67 0.37 -2.90 16 26 C 0.11 1.18 6.43 -3.71 -0.02 1.16 16 27 C -0.13 -1.46 5.17 -26.61 -0.14 -1.60 16 28 C 0.14 2.88 5.83 -3.06 -0.02 2.86 16 29 H 0.27 8.18 5.83 -40.82 -0.24 7.94 16 30 H 0.02 0.56 6.84 -51.93 -0.36 0.20 16 31 H 0.05 1.30 7.73 -51.93 -0.40 0.90 16 32 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.65 7.38 -51.93 -0.38 0.27 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.29 5.93 -51.92 -0.31 -0.01 16 39 H 0.14 0.74 7.69 -51.93 -0.40 0.34 16 40 H 0.14 0.68 7.94 -51.93 -0.41 0.26 16 41 H 0.20 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 45 H 0.08 1.00 7.11 -51.93 -0.37 0.63 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -37.95 378.56 -8.08 -46.03 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.48 Total: -2.51 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.62 Total: -4.80 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.33 Total: -56.82 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.10 Total: 20.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.95 -8.08 -46.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039144544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.376 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds